KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 16:58:46 2014 Check: 00 .. Name: ENSTTRP00000001222/1-499 Len: 554 Check: 9969 Weight: 1.00 Name: bmy_03503T0/1-276 Len: 554 Check: 6324 Weight: 1.00 Name: ENSP00000370270/1-508 Len: 554 Check: 4094 Weight: 1.00 Name: BACU010831/1-433 Len: 554 Check: 2771 Weight: 1.00 Name: ENSBTAP00000016290/1-478 Len: 554 Check: 6744 Weight: 1.00 // 1 50 ENSTTRP00000001222/1-499 ---------- ---------- ---------- ---------- -----MSADD bmy_03503T0/1-276 ---------- ---------- ---------- ---------- ---------- ENSP00000370270/1-508 ---------- ---------- ---------- ---------- -----MSSDD BACU010831/1-433 ---------- ---------- ---------- ---------- -----MSADD ENSBTAP00000016290/1-478 RLCCEGGLCG CDRRALPNSG TNAFFSELLR KQGAPSEHHW RLLNRMSADD 51 100 ENSTTRP00000001222/1-499 RHLVSSCGSF IKTEPSSPSS GIDALSHHSP SGSSDASGGF GLALGAHANG bmy_03503T0/1-276 ---------- ---------- ---------- ---------- ---------M ENSP00000370270/1-508 RHLGSSCGSF IKTEPSSPSS GIDALSHHSP SGSSDASGGF GLALGTHANG BACU010831/1-433 RHLVSSCGSF IKTEPSSPSS GIDALSHHSP RGSSDASGGF GLALGAHANG ENSBTAP00000016290/1-478 RHLGSSCGSF IKTEPSSPSS GIDALSHHSP SGSSDASGGF GLALGAHANG 101 150 ENSTTRP00000001222/1-499 LDSPPMFAGA GLGGTPCRKG YEDCAGGIME DSAIKCEYML NAIPKRLCLV bmy_03503T0/1-276 LNNSETFS-- ---------- ---------- ---------- ---------- ENSP00000370270/1-508 LDSPPMFAGA GLGGTPCRKS YEDCASGIME DSAIKCEYML NAIPKRLCLV BACU010831/1-433 LDSPPMFAGA GLGGTPCRKG YEDCASGIME DSAIKCEYML NAIPKRLCLV ENSBTAP00000016290/1-478 LDSPPMFAGA GLGGTPCRKG YEDCAGGLME DSAIKCEYML NAIPKRLCLV 151 200 ENSTTRP00000001222/1-499 CGDIASGYHY GVASCEACKA FFKRTIQGNI EYSCPATNEC EITKRRRKSC bmy_03503T0/1-276 ---------- ---------- ---------- -LSSP----- ---------- ENSP00000370270/1-508 CGDIASGYHY GVASCEACKA FFKRTIQGNI EYSCPATNEC EITKRRRKSC BACU010831/1-433 CGDIASGYHY GVASCEACKA FFKRTIQGNI EYSCPATNEC EITKRRRKSC ENSBTAP00000016290/1-478 CGDIASGYHY GVASCEACKA FFKRTIQGNI EYSCPATNEC EITKRRRKSC 201 250 ENSTTRP00000001222/1-499 QACRFMKCLK VGMLKEGVRL DRVRGGRQKY KRRLDSESSP YLSLQISPPA bmy_03503T0/1-276 ---------- -----KGVRL DRVRGGRQKY KRRLDSESSP YLSLQISPPA ENSP00000370270/1-508 QACRFMKCLK VGMLKEGVRL DRVRGGRQKY KRRLDSESSP YLSLQISPPA BACU010831/1-433 QACRFMKCLK VGMLKEGVRL DRVRGGRQKY KRRLDSESSP YLSLQISPPA ENSBTAP00000016290/1-478 QACRFMKCLK VGMLKEGVRL DRVRGGRQKY KRRLDSESSP YLSLQISPPA 251 300 ENSTTRP00000001222/1-499 KKPLTKIVSY LLVAEPDKLY AMPPPGMPEG DIKALTTLCD LADRELVVII bmy_03503T0/1-276 KKPLTKIVSY LLVAEPDKLY AMPPPGMPEG DIKALTTLCD LADRELVVII ENSP00000370270/1-508 KKPLTKIVSY LLVAEPDKLY AMPPPGMPEG DIKALTTLCD LADRELVVII BACU010831/1-433 KKPLTKIVSY LLVAEPDKLY AMPPPGMPEG DIKALTTLCD LADRELVVII ENSBTAP00000016290/1-478 KKPLTKIVSY LLVAEPDKLY AMPPPGMPEG DIKALTTLCD LADRELVVII 301 350 ENSTTRP00000001222/1-499 GWAKHIPXXX XXXXXXXXXX XXXXXXXXXX XXIVYRSLPY DDKLVYAEDY bmy_03503T0/1-276 GWAKHIPGFS NLSLGDQMSL LQSAWMEILI LGIVYRSLPY DDKLVYAEDY ENSP00000370270/1-508 GWAKHIPGFS SLSLGDQMSL LQSAWMEILI LGIVYRSLPY DDKLVYAEDY BACU010831/1-433 GWAKHIPGFS NLSLGDQMSL LQSAWMEILI LGIVYRSLPY DDKLVYAEDY ENSBTAP00000016290/1-478 GWAKHIPGFS NLSLGDQMSL LQSAWMEILI LGIVYRSLPY DDKLVYAEDY 351 400 ENSTTRP00000001222/1-499 IMD-ERSRLA -LLELYRAIL QLVRRYKKLK VEKEEFVTLK ALALANSDSM bmy_03503T0/1-276 IMDEEHSRLA GLLELYRAIL QLVRRYKKLK VEKEEFVTLK ALALANSDSM ENSP00000370270/1-508 IMDEEHSRLA GLLELYRAIL QLVRRYKKLK VEKEEFVTLK ALALANSDSM BACU010831/1-433 IMDEEHSRLA GLLELYRAIL QLVRRYKKLK VEKEEFVTLK ALALANSDSM ENSBTAP00000016290/1-478 IMDEEHSRLA GLLELYRAIL QLVRRYKKLK VEKEEFVTLK ALALANSDSM 401 450 ENSTTRP00000001222/1-499 YIEDLEAVQK LQDLLHEALQ DYELSQRHEE PRRTGKLLLT LPLLRQTAAK bmy_03503T0/1-276 YIEDLEAVQK LQDLLHEALQ DYELSQRHEE PRRTGKLLLT LPLLRQTAAK ENSP00000370270/1-508 YIEDLEAVQK LQDLLHEALQ DYELSQRHEE PWRTGKLLLT LPLLRQTAAK BACU010831/1-433 YIEDLEAVQK LQDLLHEALQ DYELSQRHEE PRRTGKLLLT LPLLRQTAAK ENSBTAP00000016290/1-478 YIEDLEAVQK LQDLLHEALQ DYELSQRHEE PRRTGKLLLT LPLLRQTAAK 451 500 ENSTTRP00000001222/1-499 AVQHFHSLKL QGKVPMHKLF LEMLEAKV-- --LRGSPEDE RFRYGEC--- bmy_03503T0/1-276 AVQHFYSIKL QGKVPMHKLF LEMLEAKV-- ---------- ---------- ENSP00000370270/1-508 AVQHFYSVKL QGKVPMHKLF LEMLEAKVGQ EQLRGSPKDE RMSSHDGKCP BACU010831/1-433 AVQHFYSIKL QGKVPMHKLF LEMLEAKV-- ---------- ---------- ENSBTAP00000016290/1-478 AVQHFYSIKL QGKVPMHKLF LEMLEAKV-- ---------- ---------- 501 550 ENSTTRP00000001222/1-499 -FQSAAFSRD KSIPAGIPNP HTHSNPTSIT WRGRQIPPIA RPGGQKKHLW bmy_03503T0/1-276 ---------- ---------- ---------- ---------- ---------- ENSP00000370270/1-508 FQSAAFTSRD QSNSPGIPNP RPSSPTPLNE RGRQISPSTR TPGGQGKHLW BACU010831/1-433 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000016290/1-478 ---------- ---------- ---------- ---------- ---------- 551 600 ENSTTRP00000001222/1-499 LTVQ bmy_03503T0/1-276 ---- ENSP00000370270/1-508 LTM- BACU010831/1-433 ---- ENSBTAP00000016290/1-478 ----