KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 16:58:49 2014 Check: 00 .. Name: ENSBTAP00000016302/1-851 Len: 931 Check: 1508 Weight: 1.00 Name: ENSP00000377232/1-898 Len: 931 Check: 7536 Weight: 1.00 Name: ENSTTRP00000015624/1-851 Len: 931 Check: 8531 Weight: 1.00 Name: bmy_04082T0/1-855 Len: 931 Check: 7178 Weight: 1.00 Name: BACU016254/1-838 Len: 931 Check: 66 Weight: 1.00 // 1 50 ENSBTAP00000016302/1-851 ---QQQQFQQ L--------- ------QQQQ LQQQQLLQLQ QLLQQSPPQA ENSP00000377232/1-898 MFSQQQQ-QQ LQQQQQQLQQ LQQQQLQQQQ LQQQQLLQLQ QLLQQSPPQA ENSTTRP00000015624/1-851 MFNQQQQQQQ L--------- --------QQ LQQQQLLQLQ QLLQQSPPQA bmy_04082T0/1-855 MFNQQQ--QQ L--------- --------QQ LQQQQLLQLQ QLLQQSPPQA BACU016254/1-838 MFNQQQQ-QQ L--------- --------QQ LQQQQLLQLQ QLLQQSPPQA 51 100 ENSBTAP00000016302/1-851 PLPMTVSRGL PQQQPQQQLL TLQGTSPTSL LNGSVLQRAL LLQQLQGMAA ENSP00000377232/1-898 PLPMAVSRGL PPQQPQQPLL NLQGTNSASL LNGSMLQRAL LLQQLQGLDQ ENSTTRP00000015624/1-851 PLPMAVSRGL PQQQPQQQLL NLQGTNSASL LNGSVLQRAL LLQQLQGLDQ bmy_04082T0/1-855 PLPMAVSRGL PQQQPQQQLL NLQGTNSASL LNGSVLQRAL LLQQLQGLDQ BACU016254/1-838 PLPMAVSRGL PQQQPQQQLL NLQGTNSASL LNGSVLQRAL LLQQLQGLDQ 101 150 ENSBTAP00000016302/1-851 GSISPSTSDP YMPVTPGFPI PALGATGNLR GYNLATPNLT PPSLTPPQLA ENSP00000377232/1-898 FAMPPATYD- ----TAGLTM PT-ATLGNLR GYGMASPGLA APSLTPPQLA ENSTTRP00000015624/1-851 FAMPPATYD- ----SAGLTM PT-ATLGNLR GYNLATPNLT APSLTPPQLA bmy_04082T0/1-855 FAMPPATYD- ----SAGLTM ST-ATLGNLR GYNLATPNLT APSLTSPQLA BACU016254/1-838 FAMPPATYD- ----SAGLTM ST-ATLGNLR GYNLATPNLT APSLTPPQLA 151 200 ENSBTAP00000016302/1-851 TPNLQQFFPQ ATRQSLLGPP PVGVPINPSQ LNLSGRTPQK QTRTSSSTTP ENSP00000377232/1-898 TPNLQQFFPQ ATRQSLLGPP PVGVPMNPSQ FNLSGRNPQK QARTSSSTTP ENSTTRP00000015624/1-851 TPNLQQFFPQ ATRQSLLGPP PVGVPINPSQ LNLSGRNTQK QARF-SSTTP bmy_04082T0/1-855 TPNLQQFFPQ ATRQSLLGPP PVGVPINPSQ LNLSGRNTQK QART-SSTTP BACU016254/1-838 TPNLQQFFPQ ATRQSLLGPP PVGVPINPSQ LNLSGRNTQK QTRT-SSTTP 201 250 ENSBTAP00000016302/1-851 NRKDSSSQTT PVEDKSDPPE GSEEAAEPRT ETPEDQEPPQ CPDDIAKEKC ENSP00000377232/1-898 NRKDSSSQTM PVEDKSDPPE GSEEAAEPRM DTPEDQDLPP CPEDIAKEKR ENSTTRP00000015624/1-851 SRKDSSSQTM PVEDKSDPPE GSEEAAEPRT DTPEDQESPH CPDCITKEKR bmy_04082T0/1-855 NRKDSSSQTM PVEDKSDPPE GSEEAAEPRT DTPEDQESPH CPDGITKERR BACU016254/1-838 NRK-----TM PVEDKSDPPE GSEEAAEPRT DTPEDQESPH CPDGITKEKR 251 300 ENSBTAP00000016302/1-851 TPALEPESCE ASEPPAKKSK SSEEPTEKGP PGQLQAEVRL QTRMMAPKQT ENSP00000377232/1-898 TPAPEPEPCE ASELPAKRLR SSEEPTEKEP PGQLQVKAQP QARMTVPKQT ENSTTRP00000015624/1-851 TAAPEPESCV ASEPPAKRSK SSEEPTEKGT PGQLQAKVQP QARLMAPKQT bmy_04082T0/1-855 TAAPESESCA ASQPPAKRSK SSEEPTEKGT PGQLQAKVQP QARLMAPKQT BACU016254/1-838 TAAPEPESCV ASEPPAKRSK SSEEPTEKGT PGQLQAKVQP QARLMAPKQT 301 350 ENSBTAP00000016302/1-851 QTPELLPEPL EAHVQPRFQP QVLQITAQVQ PQTLPV---- ----NAQVQP ENSP00000377232/1-898 QTPDLLPEAL EAQVLPRFQP RVLQVQAQVQ SQTQPRIPST ----DTQVQP ENSTTRP00000015624/1-851 QTTELLPEPL EARVLPRFQP RVLQIQAQVQ PQTQPESAT- ----DAQVQP bmy_04082T0/1-855 QTTELLPEPL EARVLPRFQP RVLQIQAQVQ PQTQPQTQPQ MLPLKAQVQP BACU016254/1-838 QTTELLPEPL EARVLPRFQP RVLQIQAQVQ PQTQPQTQSQ MLPLKAQVQP 351 400 ENSBTAP00000016302/1-851 KLQKQAQTQT SPEHSALQQV QR--QPQEEA EPRR------ ---------- ENSP00000377232/1-898 KLQKQAQTQT SPEHLVLQQK QVQPQLQQEA EPQKQVQPQV QPQAHSQGPR ENSTTRP00000015624/1-851 KLQKQAQTQT SPEHLVPRQE HL--QLQKEA EPQK------ ---------- bmy_04082T0/1-855 KLQKQAQTQT SPEHLVPQQE QL--QLQKEA EPQK------ ---------- BACU016254/1-838 KLQKQAQTQT SPEHLVPQQE QL--QLQKEA EPQK------ ---------- 401 450 ENSBTAP00000016302/1-851 ---------- ---------- QAQPQPPRHV QPLLQKQAQT QTCPQVQAEA ENSP00000377232/1-898 QVQLQQEAEP LKQVQPQVQP QAHSQPPRQV QLQLQKQVQT QTYPQVHTQA ENSTTRP00000015624/1-851 ---------- ------QVQP QAHSQSPRQV QPLLQKQAQT QTYPQVQTEA bmy_04082T0/1-855 ---------- ------QVQP QAHSQSPRQV QPPLQKQAQT QTYPQVQIEA BACU016254/1-838 ---------- ---------- ---------- ---------- ----QVQTEA 451 500 ENSBTAP00000016302/1-851 QPRLQPPEQP PKQPLVQLPV QPLEPAQGQP QTQPQVSVPA SEKAPVLVRS ENSP00000377232/1-898 QPSVQPQEH- ---PPAQVSV QPPEQTHEQP HTQPQVSLLA PEQTPVVVHV ENSTTRP00000015624/1-851 QPRVQPLELP LEQRPVQLPV QPLEPNQRQP QTQPQVSVPA LEKAPVPV-P bmy_04082T0/1-855 QPRVQPLELP LEQPPVQLPV QPLDPNQRQP QTQPQVSALA LEKAPVPVHS BACU016254/1-838 QPRVQPLELP LEQPPVQLPV QPLEPNQRQP QTQAQVSVPA LEKAPVPVHC 501 550 ENSBTAP00000016302/1-851 AALERLPDTV EARAGPEEAP PEPGGAQASM EESQEELTGG LDVAECEKRA ENSP00000377232/1-898 CGLEMPPDAV EAGGGMEKTL PEPVGTQVSM EEIQNESACG LDVGECENRA ENSTTRP00000015624/1-851 CRLETPPDTV EAGAGLEEAS PEPVGAQVGL EESQEELTSG LDVGECEERA bmy_04082T0/1-855 AVLETPPDTV EAGAGLEEAS PEPVGAQVGL EESQEELTSG LDVGECEKRA BACU016254/1-838 AVLETPPDTV EAGAGLEEAS PEPVGAQVGL EESQEELTSG LDVGECEKRA 551 600 ENSBTAP00000016302/1-851 REMLGVWGAG GSLKVTILQS SDSRAFSTVP LTPGPRASDS TSATPAAAST ENSP00000377232/1-898 REMPGVWGAG GSLKVTILQS SDSRAFSTVP LTPVPRPSDS VSSTPAATST ENSTTRP00000015624/1-851 REMLGVWGAG GSLKVTILQS SDSRAFSTVP LTPGPWSGDS TSATPAAASM bmy_04082T0/1-855 REMLGVWGAG GSLKVTILQS SDSRAFSTVP LTPGPWSGDS TSATPAAAST BACU016254/1-838 REMLGVWGAG GSLKVTILQS SDSRAFSTVP LTPGPWSGDS TSATPAAAST 601 650 ENSBTAP00000016302/1-851 PSKQALQFFC YICKAGCSSQ QEFQEHMSGA QHQQRLGEIQ HMSQAFLLSL ENSP00000377232/1-898 PSKQALQFFC YICKASCSSQ QEFQDHMSEP QHQQRLGEIQ HMSQACLLSL ENSTTRP00000015624/1-851 PSKQALQFFC YICKAGCSSQ QEFQDHMLGA QHQQRLGEIQ HMSQACLLSL bmy_04082T0/1-855 PSKQALQFFC YICKAGCSSQ QEFQDHMSGA QHQQRLGEIQ HMSQACLLSL BACU016254/1-838 PSKQALQFFC YICKAGCSSQ QEFQDHMSGA QHQQRLGEIQ HMSQACLLSL 651 700 ENSBTAP00000016302/1-851 LPVPRDVLER EDEEPPPRRW CNTCQLYYMG DLIQHRRTQD HKFAKQSLRP ENSP00000377232/1-898 LPVPRDVLET EDEEPPPRRW CNTCQLYYMG DLIQHRRTQD HKIAKQSLRP ENSTTRP00000015624/1-851 LPVPRDVLER EDQEPPPRRW CNTCQLYYMG DLIQHRRTQD HKIAKQSLRP bmy_04082T0/1-855 LPVPRDVLER EDEEPPPRRW CNTCQLYYMG DLIQHRRTQD HKIAKQSLRP BACU016254/1-838 LPVPRDVLER EDEEPPPRRW CNTCQLYYMG DLIQHRRTQD HKIAKQSLRP 701 750 ENSBTAP00000016302/1-851 FCTICNRYFK TPRKFVEHVK SQGHKDKANE LKTLEKDIAG QDEDHFITVD ENSP00000377232/1-898 FCTVCNRYFK TPRKFVEHVK SQGHKDKAKE LKSLEKEIAG QDEDHFITVD ENSTTRP00000015624/1-851 FCTVCNRYFK TPRKFVEHVK SQGHKDKAKE LKMLEKEIAS QDEDHFITVD bmy_04082T0/1-855 FCTVCNRYFK TPRKFVEHVK SQGHKDKAKE LKMLEKEIAS QDEDHFITVD BACU016254/1-838 FCTVCNRYFK TPRKFVEHVK SQGHKDKAKE LKMLEKEIAS QDEDHFITVD 751 800 ENSBTAP00000016302/1-851 AVGCFEGDEE EEEDDEEEEE IEAEEEFCKQ MRSRDISIEE WKGSETYSPN ENSP00000377232/1-898 AVGCFEGDEE EEEDDEDEEE IEVEEELCKQ VRSRDISREE WKGSETYSPN ENSTTRP00000015624/1-851 AVGCFEGDEE EEEDDDDEEE IEVEEEFCKQ VRSRDISIEE WKGSETYSPD bmy_04082T0/1-855 AVGCFEGDEE EEEDDDDEEE XEVEEEFCKQ VRSRDISIEE WKGSETYSPN BACU016254/1-838 AVGCFEGDEE EEEDDDDEEE IEVEEEFCKQ VRTRDISIEE WKGSETYSPN 801 850 ENSBTAP00000016302/1-851 TAYGVDFLVP VMGYVCRVCH KFYHSNSGAQ LSHCKSLAHF ENLQKYKKAK ENSP00000377232/1-898 TAYGVDFLVP VMGYICRICH KFYHSNSGAQ LSHCKSLGHF ENLQKYKAAK ENSTTRP00000015624/1-851 TAYGVDFLVP VMGYICRICH KFYHSNSGAQ LSHCKSLAHF ENLQKYKKAK bmy_04082T0/1-855 TAYGVDFLVP VMGYICRICH KFYHSNSGAQ LSHCKSLAHF ENLQKYKKAK BACU016254/1-838 TAYGVDFLVP VMGYICRICH KFYHSNSGAQ LSHCKSLAHF ENLQKYKKAK 851 900 ENSBTAP00000016302/1-851 KPSPTTRPLS RRCAINARNA LTALFTAGGR APSQPSTQDT AKTPSKVMPT ENSP00000377232/1-898 NPSPTTRPVS RRCAINARNA LTALFTSSGR PPSQPNTQD- -KTPSKVTAR ENSTTRP00000015624/1-851 NPSPTTRPVS RRCAINARNA LTALFTSGGR TPTQPSTQDT AKTPSKVTAQ bmy_04082T0/1-855 NPSPATRPVS RRCAINARNA LTALFTSGGR TPTQPSTQDT AKTPSKVTAQ BACU016254/1-838 NPSPATRPVS RRCAINARNA LTALFTSGGR TPTQPSTQDT AKTPSK-NAS 901 950 ENSBTAP00000016302/1-851 PPRPRLPRRS RRLRT----- ---------- - ENSP00000377232/1-898 PSQPPLPRRS TRLKT----- ---------- - ENSTTRP00000015624/1-851 PAQHPLPRRS SRLKT----- ---------- - bmy_04082T0/1-855 PAQHPLPRRS SRLKT----- ---------- - BACU016254/1-838 AAQGPAPNAS SSKNPSLVST RNHHSLLHRH S