KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 16:58:51 2014 Check: 00 .. Name: ENSP00000332663/1-946 Len: 1126 Check: 7476 Weight: 1.00 Name: ENSTTRP00000013534/1-945 Len: 1126 Check: 8482 Weight: 1.00 Name: ENSBTAP00000016311/1-952 Len: 1126 Check: 9029 Weight: 1.00 Name: bmy_02944T0/1-1109 Len: 1126 Check: 5942 Weight: 1.00 Name: BACU011329/1-943 Len: 1126 Check: 8855 Weight: 1.00 // 1 50 ENSP00000332663/1-946 ----MSVRLR FLSPGDTGAV GVVGRSASFA GFSSAQSRRI AKSINRNSVR ENSTTRP00000013534/1-945 ----MSVRVR FLSSGDTGAV GVMGRSASFA GFSSAQSRRI AXXXXXXXXX ENSBTAP00000016311/1-952 QVTTMSVRLR FLSSGDTGTV GVMGRSASFA GFSSAQSRRI AKSVHRNSVR bmy_02944T0/1-1109 ----MSVRVR FLSSGDTGAV GVMGRSASFA GFSSAQSRRI A-----NSVR BACU011329/1-943 ----MSVRVR FLSSGDTGTV GVMGRSASFA GFSSAQSRRI AKSVHRNSVR 51 100 ENSP00000332663/1-946 SRMPAKSSKM YGTLRKGSVC ADPKPQQVKK IFEALKRGLK EYLCVQQAEL ENSTTRP00000013534/1-945 XXXXXXXXXX XXMLRKGSVC SDPKPQQVKK IFEALKRGLK EYLCVQQAEL ENSBTAP00000016311/1-952 SRMPAKSSKT YGTLRKGCVC SDPKPQQVKK IFEALKRGLK EHLCAQQAEL bmy_02944T0/1-1109 SRMPVKSSKM YGTLRKGSVC SDPKPQQVKK IFEALKRGLK EYLCVQQAEL BACU011329/1-943 SRMPVKSSKM YGTLQKGSVC SDPKPQQVKK IFEALKRGLK EYLCVQQAEL 101 150 ENSP00000332663/1-946 DHLSGRHKDT RRNSRLAFYY DLD-KQTRCV ERHIRKMEFH ISKVDELYED ENSTTRP00000013534/1-945 DYLSGRHKDT RRNSRLAFYY DLD-KQTRSV ERHIRKMEFH ISKVDELYEG ENSBTAP00000016311/1-952 DYLTGRHKDT RRNSRLAFYY DLDKKQTRSV ERHIRKMEFH ISKVDELYEG bmy_02944T0/1-1109 DYLSGRHKDT RRNSRLAFYY DLDKKQTRSV ERHIRKMEFH ISKVDELYEG BACU011329/1-943 DYLSGRHKDT RRNSRLAFYY DLD------- ---------- --KVDELYEG 151 200 ENSP00000332663/1-946 YCIQCRLRDG ASSMQRAFAR CPPSRAARES LQELGRSLHE CAEDMWLIEG ENSTTRP00000013534/1-945 YCIQCRLRDG ASNMQRAFSQ CPPSRASRES LQELGRSLQE CTEDMWLIEG ENSBTAP00000016311/1-952 YCIQCRLRDG ASSMQRAFSR RPPSRASRES LQELGRSLQE CAEDMWLIEG bmy_02944T0/1-1109 YCIQCRLRDG ASNMQRAFSR CPPSRASRDS LQELGRSLQE CTEAWWATHA BACU011329/1-943 YCIQCRLRDG ASNMQRAFSR CPPSRASRGS LQELGRSLQE CTEDMWLIEG 201 250 ENSP00000332663/1-946 AL-EVHL--- ---------- ---GEFHIRM KGLVGYARL- ---------- ENSTTRP00000013534/1-945 AL-EVHL--- ---------- ---GEFHVRM KGLVGYARL- ---------- ENSBTAP00000016311/1-952 AL-EVHL--- ---------- ---GEFRVRM KGLVGYARL- ---------- bmy_02944T0/1-1109 SVRETSMRYS HAPGGISPQG SSPGLWELRA AGDQGPSRVS VPTPTQLAGR BACU011329/1-943 AL-EVHL--- ---------- ---GEFHVRM KGNRTGLRV- -------AGQ 251 300 ENSP00000332663/1-946 CP-------- -----GDHYE VLMRLGRQRW KLKGRIESDD SQTWDEEEKA ENSTTRP00000013534/1-945 CP-------- -----GDQYE VLLRLGRQRW KLRGRIESDD SQTWDEEEKV ENSBTAP00000016311/1-952 CP-------- -----GDQYE VLLRLGRQRW KLRGRIESDD SQTWDEEEKA bmy_02944T0/1-1109 APRQGARGAA DPSLRGPGPQ VLLRLGRQRW KLRGRIESDD SQTWDEEEKA BACU011329/1-943 VPVWREHQAF SGTL-ELVRR VLLRLGRQRW KLRGRIESDD SQTWDEEEKA 301 350 ENSP00000332663/1-946 FIPTLHENLD IKVTELRGLG SLAVGAVTCD IADFFTTRPQ VIVVDITELG ENSTTRP00000013534/1-945 FIPTLHENLE IKVTELRGLS SLAVGTVTCD ITDFFTTRPQ VIVVDITELG ENSBTAP00000016311/1-952 FIPTLHENFE IKVTELRGLS SLAVGAVTCD ITDFFTTRPQ VIVVDITELG bmy_02944T0/1-1109 FIPTLHENFE IKVTELRGLS SLAVGTVTCD ITDFFTTRPQ VIVVDITELG BACU011329/1-943 FIPTLHENFE IKVTELRGLS SLAVGTVTCD ITDFFTTRPQ VIVVDITELG 351 400 ENSP00000332663/1-946 TIKLQLEVQW NPFDTESFLV SPSPTGKFSM GSRKGSLYNW TPPSTPSFRE ENSTTRP00000013534/1-945 TIKLQLEVLW NPFDTESFLV SPSPTGKFSV GSRKGFLYNW TPPSTPSFRE ENSBTAP00000016311/1-952 TIKLQLEVLW NPFDTESFLV SPSPPGKFSI GSRKGSLYNW TPPNTPSFRE bmy_02944T0/1-1109 TIKLQLEVLW NPFDTESFLV SPSPTGKFSV GSRKGFLYNW TPPSTPSFRE BACU011329/1-943 TIKLQLEVLW NPFDTESFLV SPSPTGKFSV GSRKGFLYNW TPPSTPSFRE 401 450 ENSP00000332663/1-946 RYYLSVLQQP TQQALLLGGP RATSILSYLS DSDLRGPSLR SQSQELPEMD ENSTTRP00000013534/1-945 RYYLXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXRGPGLR SRSQELPEMD ENSBTAP00000016311/1-952 RYYLSVLQPR AQQALLLDRP RAPSVLSCLS DGDLRGPGLR SRSQELPEMD bmy_02944T0/1-1109 RYYLSVLQQP AQQALLLDRP RATSILSCLS DSDLRGPGLR SRSQELPEMD BACU011329/1-943 RYYLSVLRQP AQQALLLDRP RAASVLSCLS DGDLRGPGLR SRSQELPEMD 451 500 ENSP00000332663/1-946 SFSSEDPRDT ETSTSASTSD VGFLPLTFGP HASIEEEARE DPLPPGLLPE ENSTTRP00000013534/1-945 SFSSEDPRDT ETSTTASASD VGFLPLAIGP NTSIEEGAQE DPPPLGLLPE ENSBTAP00000016311/1-952 SFSSEDPRDT ETSTSASTSD VGFLPSAMGP NTSIEEEAQE EPPPLGLLPD bmy_02944T0/1-1109 SFSSEDPRDT ETSTTASTSD VGFLPLAVGP NTSIEEGAQE DPPPLGLLPE BACU011329/1-943 SFSSEDPRDT ETSTTASTSD VGFLPLAVGP NTSVEEGAQE DPPPLGLLPE 501 550 ENSP00000332663/1-946 MAHLSGGPFA EQPGWRNLGG ESPSLPQGSL FHSGTASSSQ NGHEEGATGD ENSTTRP00000013534/1-945 VFHLAEGSFV EQPGWRNLGV ESLDLPRGSP FRNHVIPGGQ EGHDEAETED ENSBTAP00000016311/1-952 MLHLAEGSFV EQPGWRDLGV GTPDLSRGSP FHNDALPGSQ GGPDEGDPKD bmy_02944T0/1-1109 VFHLAEGSFV EQAGWRNLGV ESLDLPRGSP FHNHVISGGQ EGHHEAETED BACU011329/1-943 VFHLAEGSFV EQPGWRNLGV ESLDLPRGSP FHNHVIPGGQ EGHHEAETED 551 600 ENSP00000332663/1-946 REDGPGVALE GPLQEVLELL RPTDSTQPQL RELEYQVLGF RDRLKPCRAR ENSTTRP00000013534/1-945 GVDGPGVPLE RPLQDVLDLL RSTDPAPPQL RELEYQVLSF RDRLKPRGAR ENSBTAP00000016311/1-952 TASGPGLPLE RPLQEVLDLL RSVDPAPPQL RELEYQILAF RDRLKPRRAR bmy_02944T0/1-1109 GVDGPGVPLE RPLQDVLDLL RSTDSAPPQL RELEYQVLSF RDRLKPRGAR BACU011329/1-943 GVDGPGVPLE RPLQDVLDLL RSTDSAPPQL RELEYQVLSF RDRLKPRGAR 601 650 ENSP00000332663/1-946 QEHTSAESLM ECILESFAFL NADFALDELS LFGGSQGLRK DRPLPPPSSL ENSTTRP00000013534/1-945 REHASAESLM EYILESFSFL SAHITPHELA LFGGSQGPRK DKTPPPPPAL ENSBTAP00000016311/1-952 REHASTESLM ECILESFSFL NAHIAPHELA LFGGSQGLRK DKSPPPTPPL bmy_02944T0/1-1109 REHASAESLM EYILESFSFL SAHIAPHELA LFGGSQGPRK DKTPPPPPSL BACU011329/1-943 REHASAESLM EYILESFSFL SAHIAPHELA LFGGSQGPRK DKTPPPPPSL 651 700 ENSP00000332663/1-946 KASSRELTAG APELDVLLMV -HLQVCKALL QKLASPNLSR LVQECLLEEV ENSTTRP00000013534/1-945 KAPSRELTAG APELDVLLTI TXXXXXXXXX XKLDSPNLSK MVQECLL-EA ENSBTAP00000016311/1-952 KAPSRELTAG APELDVLLTV -HLQVCTALL QKLGSPNLSR MVQECLLEEA bmy_02944T0/1-1109 KASSRELTAG APELDVLLTV -HLRICKVLL QKLDSPNLSK MVQECLLEEA BACU011329/1-943 TASCRELTAG APELDVLLMV -HLRICKVLL QKLDSXXXXX XXX-CLLEEA 701 750 ENSP00000332663/1-946 AQQKHVLETL SVLDFEKVGK ATSIEE---- ---------- ---------- ENSTTRP00000013534/1-945 AQQKQVLETL SVL-FEKVSK ATCVEE---- ---------- ---------- ENSBTAP00000016311/1-952 AQQKQVLETL SVLDFEKVSK AMSIEE---- ---------- ---------- bmy_02944T0/1-1109 AQQKQILETL SVLDFEKVSK ATSIEDSKYL PSIHGLPVCM AGSDEDESPG BACU011329/1-943 AQQKQILETL SVLDFEKVSK ATSIEE---- ---------- ---------- 751 800 ENSP00000332663/1-946 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000013534/1-945 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000016311/1-952 ---------- ---------- ---------- ---------- ---------- bmy_02944T0/1-1109 GLLSLPNTQR EAGDSSSPRV VMRAAGGDPD EMLTAEAACL CGSHWDVGKG BACU011329/1-943 ---------- ---------- ---------- ---------- ---------- 801 850 ENSP00000332663/1-946 ---------I IPQASRTKGC LKLWRGCTGP GRVLSCPATT LLNQLKKTFQ ENSTTRP00000013534/1-945 ---------I IPQATRRKGC LKLWRGCTEP GAVLSCPGTV LLDQLKKTFL ENSBTAP00000016311/1-952 ---------I LPQATRRKGC LKLWRGCTGP GATLSCPGTA LLDQLKKTFL bmy_02944T0/1-1109 LCASEPGLSV IPQATRRKGC LKLWRGCTEP GAVLSCPGTV LLDQLKKTFL BACU011329/1-943 ---------I IPQATRRKGC LKLWRGCTEP GAVLSCPGTV LLDQLKKTFL 851 900 ENSP00000332663/1-946 HRVRGKYPGQ LEI------- ---------- ---------- ---------- ENSTTRP00000013534/1-945 HRVRGKYPGQ LEI------- ---------- ---------- ---------- ENSBTAP00000016311/1-952 HRVRGKYPGQ LET------- ---------- ---------- ---------- bmy_02944T0/1-1109 HRVRGKYPGQ LEIGSPLPVP TPLGNALWIL WGLQHRLGRP PCSPISTSAN BACU011329/1-943 HRVRGKYPGQ LEI------- ---------- ---------- ---------- 901 950 ENSP00000332663/1-946 -----ACRRL LEQVVSCGGL LPGAGLPEEQ IITWFQFHSY LQRQSVSDLE ENSTTRP00000013534/1-945 -----VCRRL LEQVVSCGGL LPGAELPEEQ TITWFQFHSY LRRQSVSDLE ENSBTAP00000016311/1-952 -----ACHRL LEQVVSCGGL LPGAGLPEEQ TITWFQFHSY LRRQSVSDLE bmy_02944T0/1-1109 AFSARTCRRL LEQVVSCGGL LPGAGLPEEQ TITWFQFHSY LRRQSVSDLE BACU011329/1-943 -----ACRRL LEQVVSCGGL LPGAGLPEEQ TITWFQFHSY LRRQSVSDLE 951 1000 ENSP00000332663/1-946 KHFTQLTKEV TLIEELHCAG QAKVVRKLQG KRLGQLQPLP QTLRAWALLQ ENSTTRP00000013534/1-945 KHFAQLTKEV TLFEELQCVG QAKTVRKLKG KQLGQLQPLP QTLRAWALLQ ENSBTAP00000016311/1-952 KHFAQLTKEV TLAEELQCRA QTRTVRKLQG KRLGQLQPLP QTLRAWALLQ bmy_02944T0/1-1109 KHFAQLTKEV TLFEELQCVG QAKTVRKLQG KRLGQLQPLP QTLRAWALLQ BACU011329/1-943 KHFAQLTKEV TLFEELQCVG QAKTVRKLQG KRLGQLQPLP QTLRAWALLQ 1001 1050 ENSP00000332663/1-946 LDGTPRVCRA ASARLAGAVR NRSFREKALL FYTNALAEND ARLQQAACLA ENSTTRP00000013534/1-945 LDGTPRVCRA ASARLASVAK NKSFREKALL FYTNALTEND AKLQEAACVA ENSBTAP00000016311/1-952 LDGPPRACRA ASARLAGAAR NKSFREKALL FYTNALTEND AKLQQAACVA bmy_02944T0/1-1109 LDGTPRVCRA ASARLASAAR NKSFREKALL FYTNALTEND AKLQEAACVA BACU011329/1-943 LDGTPRVCRA ASARLASAAR NKSFREKALL FYTNALTEND AKLQEAACVA 1051 1100 ENSP00000332663/1-946 LKHLKGIESI DQTASLCQSD LEAVRAAARE TTLSFGEKGR LAFEK----- ENSTTRP00000013534/1-945 LKHLRGIESI DQIARLCQSD VEAVRAAARE TTLSFXXXXX XXXXX----- ENSBTAP00000016311/1-952 LRHLRGVESI DQIASLCQSD VEAVRAAARE TTLSFGEKGR LAFEK----- bmy_02944T0/1-1109 LKHLRGIESI DQIACLCQSD LEAVRTAARE ATLSFGKVQH PAFRSAMGLL BACU011329/1-943 LKHLRGIESI DQIARLCQSD LEAVRAAARE ATLSFGKVQH PAFRSAMGLL 1101 1150 ENSP00000332663/1-946 --MDKLCSEQ RE-VFCQEAD VEITIF ENSTTRP00000013534/1-945 --XXXXXXXX XX-XXXXXXX XXITIF ENSBTAP00000016311/1-952 --MDRLCSEQ RDAAFGQEAD VEITIF bmy_02944T0/1-1109 GPVERLCQRG HS-QLSEDAK ------ BACU011329/1-943 GPVERLCQRG HS-QLSEDAK ------