KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 16:58:54 2014 Check: 00 .. Name: ENSP00000454071/1-860 Len: 883 Check: 3641 Weight: 1.00 Name: bmy_16838T0/1-755 Len: 883 Check: 2010 Weight: 1.00 Name: BACU002482/1-860 Len: 883 Check: 8156 Weight: 1.00 Name: ENSBTAP00000016342/1-845 Len: 883 Check: 6673 Weight: 1.00 Name: ENSTTRP00000009019/1-842 Len: 883 Check: 5663 Weight: 1.00 // 1 50 ENSP00000454071/1-860 MGPWGW--KL RWTVALLLAA AGTAVGDRCE RNEFQCQDGK CISYKWVCDG bmy_16838T0/1-755 MVVS------ NPDPDPSFSF PSLSVEDKCG RNEFQCRDGK CISYKWVCDG BACU002482/1-860 MRDAAFPTSL HPIADPLVLE P---VEDKCG RNEFQCRDGK CISYKWVCDG ENSBTAP00000016342/1-845 MRLAGW--GL RWAIALLIAV GEAAVEDNCG RNEFQCQDGK CISYKWVCDG ENSTTRP00000009019/1-842 MRLAGC--GL RWAVALLIAA TAGAVEDKCG RNEFQCRDGT CISYKWVCDG 51 100 ENSP00000454071/1-860 SAECQDGSDE SQETCLSVTC KSGDFSCGGR VNRCIPQFWR CDGQVDCDNG bmy_16838T0/1-755 SAECQDGSDE SQEMCMSVTC KTGDFSCGGH VNRCIPESWR CDGQLDCENG BACU002482/1-860 SAECQDGSDE SQEMCMSVTC KTGDFSCGGH VNRCIPESWR CDGQLDCENG ENSBTAP00000016342/1-845 TAECQDGSDE SQETCKSVTC KMGDFSCGGR VNRCISGSWR CDGQVDCENG ENSTTRP00000009019/1-842 SAECQDSSDE SQETCXXXXX KTGDFSCGDH VNRCI-ESWR CDGQLDCENG 101 150 ENSP00000454071/1-860 SDEQGCPPKT CSQDEFRCHD GKCISRQFVC DSDRDCLDGS DEASCPVLTC bmy_16838T0/1-755 SDEESCPPKT CSQDEFRCND GKCIAPKFVC DSDLDCLDGS DEVSCPVPTC BACU002482/1-860 SDEESCPPKT CSQDEFRCND GKCIAPKFVC DSDLDCLDGS DEVSCPVPTC ENSBTAP00000016342/1-845 SDEEGCSPKT CSQDEFRCND GKCIAPKFVC DLDLDCLDGS DEASCPMPTC ENSTTRP00000009019/1-842 SDEEGCPPKT CSQDEFRCND GKCIAPKFVC DSDLDCLDGS DEVSCPVPTC 151 200 ENSP00000454071/1-860 GPASFQCNSS TCIPQLWACD NDPDCEDGSD EWPQRCRGLY --VFQGDSSP bmy_16838T0/1-755 GPASFQCNST TCIPELWACD GDPDCEDGSD EWPQRCGDPQ PSVPAWDNNP BACU002482/1-860 GPASFQCNST TCIPELWACD GDPDCEDGSD EWPQRCGDPQ PSVPAWDNNP ENSBTAP00000016342/1-845 GPANFQCNSS MCIPQLWACD GDPDCDDGSD EWPKHCGTPH PSGPLQDNNP ENSTTRP00000009019/1-842 SPASFQCNSS TCIPELWACD GDPDCEDGSD EWPQHCGSPH --GPQQGNNP 201 250 ENSP00000454071/1-860 CSAFEFHCLS GECIHSSWRC DGGPDCKDKS DEENCAVATC RPDEFQCSDG bmy_16838T0/1-755 CSALEFHCRS GECIHSSWRC DRDPDCKDKS DEENCAVATC RPDEFQCSDG BACU002482/1-860 CSALEFHCRS GECIHSSWRC DRDPDCKDKS DEENCAVATC RPDEFQCSDG ENSBTAP00000016342/1-845 CSALEFHCGS GECIHSSWHC DHDPDCKDKS DEENCAVATC RPDEFQCSDG ENSTTRP00000009019/1-842 CSALEFHCRS GECIHSSWHC DHDPDCKDKS DEENCAVATC RPDEFQCSDG 251 300 ENSP00000454071/1-860 NCIHGSRQCD REYDCKDMSD EVGCVNVTLC EGPNKFKCHS GECITLDKVC bmy_16838T0/1-755 TCIHGSRQCD REYDCKDLSD ELGCIN---- ---------- ---------- BACU002482/1-860 TCIHGSRQCD REYDCKDLSD ELGCINVTLC EGPNKFKCQS GECISLDKVC ENSBTAP00000016342/1-845 TCIHGSRQCD REPDCKDLSD ELGCVNVTLC EGPNKFKCQS GECISLDKVC ENSTTRP00000009019/1-842 TCIHGSRQCD REYDCKDLSD ELGCINVTLC EGPNKFKCQS GECISLDKVC 301 350 ENSP00000454071/1-860 NMARDCRDWS DEPIKECGTN ECLDNNGGCS HVCNDLKIGY ECLCPDGFQL bmy_16838T0/1-755 ---------- -------GTN ECLDNKGGCS HICNDLKIGY ECLCPEGFQL BACU002482/1-860 NSVRDCRDWS DEPLKECGTN ECLDNKGGCS HICNDLKIGY ECLCPEGFRL ENSBTAP00000016342/1-845 NSVRDCRDWS DEPLKDCGTN ECLDNKGGCS HICNDLKIGY ECLCPEGFQL ENSTTRP00000009019/1-842 NSVRDCRDWS DEPLKECGTN ECLDNKGGCS HICNDLKIGY ECLCPEGFQL 351 400 ENSP00000454071/1-860 VAQRRCEDID ECQDPDTCSQ LCVNLEGGYK CQCEEGFQLD PHTKACKAVG bmy_16838T0/1-755 VDKHRCEDID ECQDPDACSQ LCVNLEGSYK CQCEEGFQLE PLTKACKAVG BACU002482/1-860 VDKHRCEDID ECQDPDACSQ LCVNLEGSYK CQCEEGFQLE PLTKACKAVG ENSBTAP00000016342/1-845 VGKHRCEDID ECQNPDTCSQ LCVNLEGSYK CECEEGFRLE PLTKACKAVG ENSTTRP00000009019/1-842 VDKHRCEDID ECQDPDACSQ LCVNLEGSYK CQCEEGFQLE PLTKACKAVG 401 450 ENSP00000454071/1-860 SIAYLFFTNR HEVRKMTLDR SEYTSLIPNL RNVVALDTEV ASNRIYWSDL bmy_16838T0/1-755 TIAYLFFTNR HEVRKMTLDR SEYASLIPNL KNVVALDTEV ASNRIYWSDL BACU002482/1-860 TIAYLFFTNR HEVRKMTLDR SEYASLIPNL KNVVALDTEV ASNRIYWSDL ENSBTAP00000016342/1-845 TIAYLFFTNR HEVRKMTLDR SEYTSLIPNL KNVVALDTEV ASNRIYWSDL ENSTTRP00000009019/1-842 TIAYLFFTNR HEVRKMTLDR SEYASVIPNL KNVVALDTEV ASNRIYWSDL 451 500 ENSP00000454071/1-860 SQRMICSTQL DRAHGVSSYD TVISRDIQAP DGLAVDWIHS NIYWTDSVLG bmy_16838T0/1-755 SQKKIYSAQI NRAPSFSSYD TVISEDLQAP DGLAVDWIHS NIYWTDSILG BACU002482/1-860 SQKKIYSAQI NRAPSFSSYD TVISEDLQAP DGLAVDWIHS NIYWTDSILG ENSBTAP00000016342/1-845 SQRKIYSAQI DGAPGFSSYD TVIGEDLQAP DGLAVDWIHS NIYWTDSILG ENSTTRP00000009019/1-842 SQRKIYSAQI NRASSFSSYD TVISEDLQAP DGLAVDWIHS NIYWTDSILG 501 550 ENSP00000454071/1-860 TVSVADTKGV KRKTLFRENG SKPRAIVVDP VHGFMYWTDW GTPAKIKKGG bmy_16838T0/1-755 TVSVADTKGV KRKTLFQEEG SKPRAIVVDP VHGFMYWTDW GTPAKIKKGG BACU002482/1-860 XXXXXXX--- XXXXXXXXXX XXXXXXVVDP VHGFMYWTDW GTPAKIKKGG ENSBTAP00000016342/1-845 TVSVADTKGV KRKTLFQEEG SKPRAIVVDP VHGFMYWTDW GAPAEIKKGG ENSTTRP00000009019/1-842 TVSVADTKGV KRKTLFQEKG SKPRAIVVDP IHGFMYWTDW GTPAKIKKGG 551 600 ENSP00000454071/1-860 LNGVDIYSLV TENIQWPNGI TLDLLSGRLY WVDSKLHSIS SIDVNGGNRK bmy_16838T0/1-755 LNGVDIYSLV TEDIQWPNGI TLGMLGAQWS W-----GVRH SLEEKKWPRA BACU002482/1-860 LNGVDVYSLV TEDIQWPNGI TLDLSSGRLY WVDSKLHSIS SIDVTGGNRK ENSBTAP00000016342/1-845 LNGVDVYSLV TEDIQWPNGI TLDLSGGRLY WVDSKLHSIS SIDVNGGNRK ENSTTRP00000009019/1-842 LNGVDVYSLV TEDIQWPNGI TLDLSSGRLY WVDSKLHSIS SIDVTGGNRK 601 650 ENSP00000454071/1-860 TILEDEKRLA HPFSLAVFED KVFWTDIINE AIFSANRLTG SDVNLLAENL bmy_16838T0/1-755 SLRFYNLKLS SHSPTYLHAD KVFWTDIVNE AIFSANRLTG SDINLMAENL BACU002482/1-860 TVLEDEKKLA HPFSLAIFED KVFWTDIVNE AIFSANRLTG SDINLMAENL ENSBTAP00000016342/1-845 TVLEDKKKLA HPFSLAIFED KVFWTDVINE AIFSANRLTG SDISLMAENL ENSTTRP00000009019/1-842 TILEDKKKLA HPFSLAIFED KVFWTDIVNE AIFSANRLTG SDINLMAENL 651 700 ENSP00000454071/1-860 LSPEDMVLFH NLTQPRGVNW CERTTLSNGG CQYLCLPAPQ INPHSPKFTC bmy_16838T0/1-755 LSPEDIVLFH NLTQPRGVNW CERTALRNGG CQYLCLPAPQ INPHSPRFTC BACU002482/1-860 LSPEDIVLFH NLTQPRGVNW CERTALRNGG CQYLCLPAPQ INPHSPRFTC ENSBTAP00000016342/1-845 LSPEDIVLFH NLTQPRGVNW CERTALRNGG CQYLCLPAPQ INPRSPKFTC ENSTTRP00000009019/1-842 LSPEDIVLFH NLTQPRGVNW CERTALRNGG CQYLCLPAPQ INPRSPRFTC 701 750 ENSP00000454071/1-860 ACPDGMLLAR DMRSCLTEAE AAVATQETST VRLKVSSTAV RTQHTTTRPV bmy_16838T0/1-755 ACPDGTLLAK DMRSCLA--- ---------- ---------- ---------- BACU002482/1-860 ACPDGTLLAK DMRRCLAATE PAVTTWRPST ----VNSTTV GLKRT----- ENSBTAP00000016342/1-845 ACPDGMLLAK DMRSCLTESE SAVTTRGPST ----VSSTAV GPKRT----- ENSTTRP00000009019/1-842 ACPDGTRLAE DMRSCLAETE PAVTTWRPST ----VNSTTV GPKRT----- 751 800 ENSP00000454071/1-860 PDTSRLPGAT PGLTTVEIVT MSHQALGDVA GRGNEKKPSS VRALSIVLPI bmy_16838T0/1-755 ---------- ---------- ----VLADVA GRADAERPQG VGALYIVLPI BACU002482/1-860 --------AS PELTTAESVT MSQQVLADVA GRADAERPQG VGALYIVLPI ENSBTAP00000016342/1-845 --------AS PELTTAESVT MSQQGQGDIA SQADTERPGS VGALYIVLPI ENSTTRP00000009019/1-842 --------AS PELTTAESVT MSQQVLGDVA GRADAERPQG VGALYIVLPI 801 850 ENSP00000454071/1-860 VLLVFLCLGV FLLWKNWRLK NINSINFDNP VYQKTTEDEV HICHNQDGYS bmy_16838T0/1-755 ALLILLCFGT FLLWKNWRLK SINSINFDNP VYQKTTEDEV HICRSQDGYT BACU002482/1-860 ALLILLCFGT FLLWKNWRLK SINSINFDNP VYQKTTEDEV HICRSQDGYT ENSBTAP00000016342/1-845 ALLILLAFGT FLLWKNWRLK SINSINFDNP VYQKTTEDEV HICRSQDGYT ENSTTRP00000009019/1-842 ALLILLCFGT FLLWKNWRLK SINSINFDNP VYQKTTEDEV HICRSQDGYT 851 900 ENSP00000454071/1-860 YPSRQMVSLE DDVA------ ---------- --- bmy_16838T0/1-755 YPARQMVSLE DDVA------ ---------- --- BACU002482/1-860 YPARAQVYLG SNGSSSLGPP AGSVSISCDT FHD ENSBTAP00000016342/1-845 YPSRQMVSLE DDVA------ ---------- --- ENSTTRP00000009019/1-842 YPSRQMVSLE DDVA------ ---------- ---