KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 16:58:55 2014 Check: 00 .. Name: ENSP00000261749/1-208 Len: 228 Check: 8199 Weight: 1.00 Name: ENSBTAP00000016349/1-121 Len: 228 Check: 1145 Weight: 1.00 Name: bmy_07505T0/1-146 Len: 228 Check: 8417 Weight: 1.00 Name: BACU016019/1-208 Len: 228 Check: 7819 Weight: 1.00 Name: ENSTTRP00000009127/1-208 Len: 228 Check: 7752 Weight: 1.00 // 1 50 ENSP00000261749/1-208 MAQETNHSQV PMLCSTGCGF YGNPRTNGMC SVCYKEHLQR QNSSNGRISP ENSBTAP00000016349/1-121 MAQETNHSQV PMLCSTGCGF YGNPRTNGMC SVCYKEHLQR QNSSNGRISP bmy_07505T0/1-146 MAQETNHSQV PMLCSTGCGF YGNPRTNGMC SVCYKEHLQR QNSSNGRISP BACU016019/1-208 MAQETNHSQV PMLCSTGCGF YGNPRTNGMC SVCYKEHLQR QNSSNGRISP ENSTTRP00000009127/1-208 MAQETNHSQV PMLCSTGCGF YGNPRTNGMC SVCYKEHLQR QNSSNGRISP 51 100 ENSP00000261749/1-208 P--------- ---------- -ATSVSSLSE SLPVQCTDGS VPEAQSALDS ENSBTAP00000016349/1-121 P--------- ---------- -APSVTSLSE SLPVQCTDGS VPEAQSALDS bmy_07505T0/1-146 PDEVLACPGY RVTNLRCGPV TAPSVSSLSE SLPVQCTDGS VPETQSALDS BACU016019/1-208 P--------- ---------- -APSVSSLSE SLPVQCTDGS IPETQSALDS ENSTTRP00000009127/1-208 P--------- ---------- -APSVSSLSE SLPVQCTDGS VPETQSALDS 101 150 ENSP00000261749/1-208 TSSSMQPSPV SNQSLLSESV ASSQLDSTSV DKAVPETEDV QASVSDTAQQ ENSBTAP00000016349/1-121 TASSVQPSPV SNQSLLSESV ASSQVDSTSV DKAIPETEDL Q--------- bmy_07505T0/1-146 TSSSMQPSPV SNQSLLSESV ASSQVDSTSV DKAIPETEDL Q--------- BACU016019/1-208 TSSSMQPSPV SNQSLLSESV ASSQVDSTSV DKAIPETEDL QASVSETAQQ ENSTTRP00000009127/1-208 TSSSMQPSPV SNQSLLSESV ASSQVDSTSV DKAISETEDL QASVSETAQQ 151 200 ENSP00000261749/1-208 PSEEQSKSLE KPKQKKNRCF MCRKKVGLTG FECRCGNVYC GVHRYSDVHN ENSBTAP00000016349/1-121 ---------- ---------- ---------- ---------- ---------- bmy_07505T0/1-146 ---------- ---------- ---------- ---------- GLHMN----- BACU016019/1-208 PSEEQSKSLE KPKQKKNRCF MCRKKVGLTG FECRCGNVYC GVHRYSDVHN ENSTTRP00000009127/1-208 PSEEESKSLE KPKQKKNRCF MCRKKVGLTG FECRCGNVYC GVHRYSDVHN 201 250 ENSP00000261749/1-208 CSYNYKADAA EKIRKENPVV VGEKIQKI ENSBTAP00000016349/1-121 ---------- ---------- -------- bmy_07505T0/1-146 ---------- ---------- -------- BACU016019/1-208 CSYNYKADAA EKIRKENPVV VGEKIQKI ENSTTRP00000009127/1-208 CSYNYKADAA EKIRKENPVV VGEKIQKI