KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 16:58:56 2014 Check: 00 .. Name: ENSP00000333266/1-1012 Len: 1067 Check: 1460 Weight: 1.00 Name: ENSBTAP00000016365/1-998 Len: 1067 Check: 4498 Weight: 1.00 Name: ENSTTRP00000004615/1-1010 Len: 1067 Check: 8902 Weight: 1.00 Name: bmy_06021T0/1-1063 Len: 1067 Check: 42 Weight: 1.00 Name: BACU002389/1-1010 Len: 1067 Check: 5459 Weight: 1.00 // 1 50 ENSP00000333266/1-1012 MDALDASKLL DEELYSRQLY VLGSPAMQRI QGARVLVSGL QGLGAEVAKN ENSBTAP00000016365/1-998 MDTLETSKLL DKELYSRQLY VLGLPAMQRI QGAKVLLSGL QGLGAEVAKN ENSTTRP00000004615/1-1010 MDVLETSKLL DEELYSRQLY VLGLPAMQRI QRAKVLLSGL QGVGAEVAKN bmy_06021T0/1-1063 MDVLETSKSL DEELYSRQLY VLGLPAMQRI QGAKVLLSGL QGLGAEVAKN BACU002389/1-1010 MDVLETSKSL DEELYSRQLY VLGLPAMQRI QGAKVLLSGL QGLGAEVAKN 51 100 ENSP00000333266/1-1012 LVLMGVGSLT LHDPHPTCWS DLAAQFLLSE QDLERSRAEA SQELLAQLNR ENSBTAP00000016365/1-998 LVLMGVGSLT LHDPHPTCWS DLAAQFLLSE QDLGRSRAEA SQKLLAELNG ENSTTRP00000004615/1-1010 LVLMGVGSLT LHDPHPTCWS DLSAQFFLSE QDLGRSRAEA SQELLAKLNG bmy_06021T0/1-1063 LVLMGVGSLT LHDPHPTCWS DLSAQFFLSE QDLGRNRAEA SQELLAKLNG BACU002389/1-1010 LVLMGVGSLT LHDPHPTCWS DLSAQFFLSE QDLGRSRAEA SQELLAKLNG 101 150 ENSP00000333266/1-1012 AVQVVVHTGD ITEDLLLDF- ---------- ---------- ---QVVVLTA ENSBTAP00000016365/1-998 AVQVSVYTGD ITKDLLLDF- ---------- ---------- ---QVVVLTA ENSTTRP00000004615/1-1010 AVQVCIHTGD ITEDLLLDF- ---------- ---------- ---QVVVLTA bmy_06021T0/1-1063 AVQVCIHTGD ITEDLLLDFQ VPSQPYSPGQ PSVPLQPLAA GSTQVVVLTA BACU002389/1-1010 AVQVCIHTGD ITEDLLLDF- ---------- ---------- ---QVVVLTA 151 200 ENSP00000333266/1-1012 AKLEEQLKVG TLCHKHGVCF LAADTRGLVG QLFCDFGEDF TVQDPTEAEP ENSBTAP00000016365/1-998 SRLEEQLRVG TLCHEHGVCF LVADTRGLVG QLFCDFGENF TVQDPTEAEP ENSTTRP00000004615/1-1010 SELQEQLKVG TICHKHGVCF LVADTRGLVG QLFCDFGEDF TVQDPTEAEP bmy_06021T0/1-1063 SELQEQLKVG TICHKHGVCF LVADTRGLVG QLFCDFGEDF TVQDPTEAEP BACU002389/1-1010 SELQEQLKVG TICHKHGVCF LVADTRGLVG QLFCDFGEDF TVQDPTEAEP 201 250 ENSP00000333266/1-1012 LTAAIQHISQ GSPGILTLRK GANTHYFRDG DLVTFSGIEG MVELNDCDPR ENSBTAP00000016365/1-998 LTANIQHISQ GSPGILTLRE EAGTHHFHTG DWVTFSGIEG MVELNGCDPR ENSTTRP00000004615/1-1010 LVAAIQHISQ GSPGILTLRE EADAHRFNNG DLVTFSGIEG MVELNGCAPR bmy_06021T0/1-1063 LMAAIQHISQ GSPGILTLRE EADAHRFNSG DLVTFSGIEG MVELNGCAPR BACU002389/1-1010 LMAAIQHISQ GSPGILTLRE EADAHRFNSG DLVTFSGIEG MVELNGCAPR 251 300 ENSP00000333266/1-1012 SIHVREDGSL EIGDTTTFSR YLRGGAITEV KRPKTVRHKS LDTALLQPHV ENSBTAP00000016365/1-998 PLHVREDGTL EIGDTTAFSC YLRGGAVTEV KRAKTVSHEP LDTALLQPRV ENSTTRP00000004615/1-1010 PLHVQRDGTL EIGDTTTFSH YLRGGAVTEV KRPKTVSHEP LDTALFQPRV bmy_06021T0/1-1063 PLHVQRDGTL EIGDTTTFSR YLRGGAVTEV KRPKTVSHEP LDTALLQPRV BACU002389/1-1010 PLHVQRDGTL EIGDTTTFSR YLRGGAVTEV KRPKTVSHEP LDTALLQPRV 301 350 ENSP00000333266/1-1012 VAQSSQEVHH AHCLHQAFCA LHKFQHLHGR PPQPWDPVDA ETVVGLARDL ENSBTAP00000016365/1-998 VAQSAQKV-R ARCLHQSFRA LHKFQQLHGR PPKPWDPVDA EMVVDLAQAM ENSTTRP00000004615/1-1010 VAQSPQEVHR AHCLHQAFHA LHKFQQLHGR PPKPWDPVDA EMVVDLAQAL bmy_06021T0/1-1063 VAQSPQEVHR AHCLHQAFHA LHKFQQLHGR PPKPWDPVDA EMVVDLAQAL BACU002389/1-1010 VAQSPQEVHR AHCLHQAFHA LHKFQQLHGR PPKPWDPVDA EMVVDLAQAL 351 400 ENSP00000333266/1-1012 EPLKRTEEEP LEEPLDEALV RTVALSSAGV LSPMVAMLGA VAAQEVLKAI ENSBTAP00000016365/1-998 GPLKGTEGEP LEEQLDEALV RTVALSSAGG LSPMAAVLGA VAAQEVLKAI ENSTTRP00000004615/1-1010 ESLKGTEGEP LEEQLDKALV RRVALSSAGG LSPMAAVLGA VAAQEVLKAV bmy_06021T0/1-1063 ESLKGTEGEP LEEQLDKALV RTVALSSAGG LSPMAAVLGA VAAQEVLKAV BACU002389/1-1010 ESLKGTEGEP LEEQLDKALV RTVALSSAGG LSPMAAVLGA VAAQEVLKAV 401 450 ENSP00000333266/1-1012 SRKFMPLDQW LYFDALDCLP EDGELLPSPE DCALRGSRYD GQIAVFGAGF ENSBTAP00000016365/1-998 SGKFMPLDQW LYFDALDCLP EDGDPFPNPE DCAPRRCRYD GQTAVFGTNF ENSTTRP00000004615/1-1010 SKKFMPLDQW LYFDALDCLP EDEEPFPNPE DYAPRDCRYD GQIAVFGAGF bmy_06021T0/1-1063 SKKFMPLDQW LYFDALDCLP EDEEPFPNPE DYAPRDCRYD GQIAVFGAGF BACU002389/1-1010 SKKFMPLDQW LYFDALDCLP EDEEPFPNPE DYAPRDCRYD GQIAVFGAGF 451 500 ENSP00000333266/1-1012 QEKLRRQHYL LVGAGAIGCE LLKVFALVGL GAGNSGGLTV VDMDHIERSN ENSBTAP00000016365/1-998 QEKLSHQHYL LVGAGAVGCE LLKSFALMGL GAGDGGGVTV ADMDHVELSN ENSTTRP00000004615/1-1010 QEKLSHQRYL LVGAGAIGCE LLKGFALVGL GAGGSGGVTV ADMDHVERSN bmy_06021T0/1-1063 QEKLSHQHYL LVGAGAIGCE LLKGFALVGL GAGGSGGVTV ADMDHVERSN BACU002389/1-1010 QEKLSHQHYL LVGAGAIGCE LLKGFALVGL GAGGSGGVTV ADMDHVERSN 501 550 ENSP00000333266/1-1012 LSRQFLFRSQ DVG------- ---------- ---------- ----RPKAEV ENSBTAP00000016365/1-998 LSRQFLFRSQ DIH------- ---------- ---------- ----RKKAEV ENSTTRP00000004615/1-1010 LSRQFLFRPQ DFG------- ---------- ---------- ----RPKAEV bmy_06021T0/1-1063 LSRQFLFRPQ DFGVSADPSP HPCPGLSSHN APLPPPNVFL LSSQRSKAEV BACU002389/1-1010 LSRQFLFRPQ DFG------- ---------- ---------- ----RPKAEV 551 600 ENSP00000333266/1-1012 AAAAARGLNP DLQVIPLTYP LDPTTEHIYG DNFFSRVDGV AAALDSFQAR ENSBTAP00000016365/1-998 AAEATRRLNA DLQVTPLNLQ LDPTTEDIFG DDFFSGVNGV AAALDTFEAR ENSTTRP00000004615/1-1010 AAEAARRLNS DLQVTPLTYQ LDLTTEHIYG DNFFSSVDGV AAALDSFQAR bmy_06021T0/1-1063 AAEAAHRLNS DLQVTPLTYQ LDLTTEHIYG DNFFSSVDGV AAALDSFQAR BACU002389/1-1010 AAEAAHRLNS DLQVTPLTYQ LDLTTEHIYG DNFFSSVDGV AAALDSFQAR 601 650 ENSP00000333266/1-1012 RYVAARCTHY LKPLLEAGTS GTWGSATVFM PHVTEAYRAP ASAAASEDAP ENSBTAP00000016365/1-998 DYVAARCTHF LKPLLEAGTM GTRGSASVFI PHVTENYKAP -SDAASEDAP ENSTTRP00000004615/1-1010 RYVAARCTHY LKPLLEAGTK GTLGSACVFI PHVTEDYRAP ASAAASEDAS bmy_06021T0/1-1063 RYVAARCTHY LKPLLEAGTK GTLGSACVFI PHVTEDYRAP ASAAASEDAS BACU002389/1-1010 RYVAARCTHY LKPLLEAGTK GTLGSACVFI PHVTEDYRAP ASAAASEDAS 651 700 ENSP00000333266/1-1012 YPVCTVRYFP STAEHTLQWA RHEFEELFRL SAETINHHQQ AHTSLADMDE ENSBTAP00000016365/1-998 DPVCTVRYIP ATTEHTVQWA KGEFDDLFCE SAKTINSHPQ ALSSPEDLVK ENSTTRP00000004615/1-1010 YPVCTVRHFP STTEHTLQWA RDEFEGLFYL SAETINCHQQ ALTSLAHLDE bmy_06021T0/1-1063 YPVCTVRHFP STTEHTLQWA RDEFEGLFRL SAETINCHQQ AFTSLAHLDE BACU002389/1-1010 YPVCTVRHFP STTEHTLQWA RDEFEGLFRL SAETINCHQQ AFTSLAHLDE 701 750 ENSP00000333266/1-1012 PQTLTLLKPV LGVLRVRPQN WQDCVAWALG HWKLCFHYGI KQLLRHFPPN ENSBTAP00000016365/1-998 SQKQPLLQTM RGVLTERPQT WQDCVLWAFG HWQLRFHYGI TQLLRTYPPD ENSTTRP00000004615/1-1010 SQVLTVQQVV LGVLRQRPQT WRDCVLWALG QWQLCFHYGI TQLLSRFPPD bmy_06021T0/1-1063 SQVLTLQQVV LGVLRERPQT WQDCVLWALG QWQLCFHYGI TQLLSRFPPD BACU002389/1-1010 SQVLTLQQVV LGVLRERPQT WQDCVLWALG QWQLCFHYGI TQLLSRFPPD 751 800 ENSP00000333266/1-1012 KVLEDGTPFW SGPKQCPQPL EFDTNQDTHL LYVLAAANLY AQMHGLPGSQ ENSBTAP00000016365/1-998 KVQEDGTPFW SGPKQCPQPL KFDASQDMHL LYVLAAANLY AQMHGLPGSQ ENSTTRP00000004615/1-1010 KVLENGTLFW SGPKQCPRPL EFDASQDTHL LYVLAAANLY AQMHGLPGSR bmy_06021T0/1-1063 KVLEDGTLFW SGPKQCPQPL EFDASQDTHL LYVLAAANLY AQMHGLPGSR BACU002389/1-1010 KVLEDGTLFW SGPKQCPRPL EFDASQDTHL LYVLAAASLY AQMHGLPGSR 801 850 ENSP00000333266/1-1012 DWTALRELLK LLPQPDPQQM APIFASNLEL ASASAEFGPE QQKELNKALE ENSBTAP00000016365/1-998 DQTALRGLLN LLPLPDPQNL DRIFASELEL DS------PS GCKQLHEDLK ENSTTRP00000004615/1-1010 DQTALRRLLK LQPLPDPQDL APIFSSDLEL ASAYAEFGPE QSKQLHEALE bmy_06021T0/1-1063 DQTAFRRLLK LLPLPDPQDL APIFASDLEL ASAYAEFGPE QSKKLHEALE BACU002389/1-1010 DQTAFRRLLK LLPLPDPQDL APIFASDLEL ASAYAEFGPE QSKKLHEALE 851 900 ENSP00000333266/1-1012 VWSVGPPLKP LMFEKDDDSN FHVDFVVAAA SLRCQNYGIP PVNRAQSKRI ENSBTAP00000016365/1-998 TWSKGPPLKP LTFEKDNDSN FHVDFVVAAA SLRAQNYGIP VASHAETKRI ENSTTRP00000004615/1-1010 IWTVGPPLEP LTFEKDND-- FHVDFVAAAA SLRAQNYGIP PADRTKTKRI bmy_06021T0/1-1063 IWTVGPPLEP LTFEKDDD-- FHVDFVAAAA SLRAQNYGIP PADRTKTKRI BACU002389/1-1010 IWTVGPPLEP LTFEKDDD-- FHVDFVAAAA SLRAQNYGIP PADRTKTKQI 901 950 ENSP00000333266/1-1012 VGQIIPAIAT TTAAVAGLLG LELYKVVSGP RPRSAFRHSY LHLAENYLIR ENSBTAP00000016365/1-998 VGRIIPAVVT TTAAVAGLVG LELYKVVGGP RPRHAFRHSY LHLAENYFSR ENSTTRP00000004615/1-1010 VGQITPAIAT TTAAVAGLVG LELYKVVGSP RPRSAFRHSY LNLAENYFSR bmy_06021T0/1-1063 VGRITPAIAT TTAAVAGLVG LELYKVVGSP RPRSAFRHSY LNLAENYFSR BACU002389/1-1010 VGRITPAIAT TTAAVAGLVG LELYKVVGSP RPRSAFRHSY LNLAENYFSR 951 1000 ENSP00000333266/1-1012 YMPFAPAIQT FHHLKWTSWD RLKVPAGQPE RTLESLLAHL QEQHGLRVRI ENSBTAP00000016365/1-998 WVPKAPDIQK FHHLKWTCWD RLEVPAGQPE RTLESLLAHI QELQGLRVTM ENSTTRP00000004615/1-1010 WVPHAPAIQK FHHWKWTCWD RLEVPAGQPE RTLESLLAHV QKLNGLRVRM bmy_06021T0/1-1063 WVPHAPAIQE FHHWKWTCWD RLEVPAGQPE RTLESLLAHV QKLNGLRVRM BACU002389/1-1010 WVPHAPAIQE FHHWKWTCWD RLEVPAGQPE RTLESLLAHV QKLNGLRVRM 1001 1050 ENSP00000333266/1-1012 LLHGSALLYA AGWSPEKQAQ HLPLRVTELV QQLTGQAPAP GQRVLVLELS ENSBTAP00000016365/1-998 LLHGSALLYS AGWSEEKQTQ HLSRRVTDLV KKV------P GQRVLVLELG ENSTTRP00000004615/1-1010 LLHGKALLYS AGWSPEKQDQ HLSRRVTDLV LEVTRQVPKP GQRVLVLELS bmy_06021T0/1-1063 LLHGKALLYS AGWSPEKQDQ HLSRRVTDLV LEVTRQV--P EQRVLVLELS BACU002389/1-1010 LLHGKALLYS AGWSPEKQDQ HLSRRVTDLV LEVTRQVPEP GQRVLVLELS 1051 1100 ENSP00000333266/1-1012 CEGDDEDTAF PPLHYEL ENSBTAP00000016365/1-998 YEGEEDDTNF PRLHYKL ENSTTRP00000004615/1-1010 YEGEKEDVTF PPLHYKL bmy_06021T0/1-1063 YEGEKEDVTF PPLHYKL BACU002389/1-1010 YEGEKEDVTF PPLHYKL