KEY:
ENSP* - Homo sapiens (Human)
ENSBTA* - Bos taurus (Cow)
ENSTTR* - Tursiops truncatus (Dolphin)
bmy_* - Balaena mysticetus (Bowhead whale)
BACU* - Balaenoptera acutorostrata (Minke whale)
Copy from below the line for a valid .msf file.
----------------------------------------------------------------------------------
NoName MSF: 5 Type: P Thu May 15 16:58:56 2014 Check: 00 ..
Name: ENSP00000333266/1-1012 Len: 1067 Check: 1460 Weight: 1.00
Name: ENSBTAP00000016365/1-998 Len: 1067 Check: 4498 Weight: 1.00
Name: ENSTTRP00000004615/1-1010 Len: 1067 Check: 8902 Weight: 1.00
Name: bmy_06021T0/1-1063 Len: 1067 Check: 42 Weight: 1.00
Name: BACU002389/1-1010 Len: 1067 Check: 5459 Weight: 1.00
//
1 50
ENSP00000333266/1-1012 MDALDASKLL DEELYSRQLY VLGSPAMQRI QGARVLVSGL QGLGAEVAKN
ENSBTAP00000016365/1-998 MDTLETSKLL DKELYSRQLY VLGLPAMQRI QGAKVLLSGL QGLGAEVAKN
ENSTTRP00000004615/1-1010 MDVLETSKLL DEELYSRQLY VLGLPAMQRI QRAKVLLSGL QGVGAEVAKN
bmy_06021T0/1-1063 MDVLETSKSL DEELYSRQLY VLGLPAMQRI QGAKVLLSGL QGLGAEVAKN
BACU002389/1-1010 MDVLETSKSL DEELYSRQLY VLGLPAMQRI QGAKVLLSGL QGLGAEVAKN
51 100
ENSP00000333266/1-1012 LVLMGVGSLT LHDPHPTCWS DLAAQFLLSE QDLERSRAEA SQELLAQLNR
ENSBTAP00000016365/1-998 LVLMGVGSLT LHDPHPTCWS DLAAQFLLSE QDLGRSRAEA SQKLLAELNG
ENSTTRP00000004615/1-1010 LVLMGVGSLT LHDPHPTCWS DLSAQFFLSE QDLGRSRAEA SQELLAKLNG
bmy_06021T0/1-1063 LVLMGVGSLT LHDPHPTCWS DLSAQFFLSE QDLGRNRAEA SQELLAKLNG
BACU002389/1-1010 LVLMGVGSLT LHDPHPTCWS DLSAQFFLSE QDLGRSRAEA SQELLAKLNG
101 150
ENSP00000333266/1-1012 AVQVVVHTGD ITEDLLLDF- ---------- ---------- ---QVVVLTA
ENSBTAP00000016365/1-998 AVQVSVYTGD ITKDLLLDF- ---------- ---------- ---QVVVLTA
ENSTTRP00000004615/1-1010 AVQVCIHTGD ITEDLLLDF- ---------- ---------- ---QVVVLTA
bmy_06021T0/1-1063 AVQVCIHTGD ITEDLLLDFQ VPSQPYSPGQ PSVPLQPLAA GSTQVVVLTA
BACU002389/1-1010 AVQVCIHTGD ITEDLLLDF- ---------- ---------- ---QVVVLTA
151 200
ENSP00000333266/1-1012 AKLEEQLKVG TLCHKHGVCF LAADTRGLVG QLFCDFGEDF TVQDPTEAEP
ENSBTAP00000016365/1-998 SRLEEQLRVG TLCHEHGVCF LVADTRGLVG QLFCDFGENF TVQDPTEAEP
ENSTTRP00000004615/1-1010 SELQEQLKVG TICHKHGVCF LVADTRGLVG QLFCDFGEDF TVQDPTEAEP
bmy_06021T0/1-1063 SELQEQLKVG TICHKHGVCF LVADTRGLVG QLFCDFGEDF TVQDPTEAEP
BACU002389/1-1010 SELQEQLKVG TICHKHGVCF LVADTRGLVG QLFCDFGEDF TVQDPTEAEP
201 250
ENSP00000333266/1-1012 LTAAIQHISQ GSPGILTLRK GANTHYFRDG DLVTFSGIEG MVELNDCDPR
ENSBTAP00000016365/1-998 LTANIQHISQ GSPGILTLRE EAGTHHFHTG DWVTFSGIEG MVELNGCDPR
ENSTTRP00000004615/1-1010 LVAAIQHISQ GSPGILTLRE EADAHRFNNG DLVTFSGIEG MVELNGCAPR
bmy_06021T0/1-1063 LMAAIQHISQ GSPGILTLRE EADAHRFNSG DLVTFSGIEG MVELNGCAPR
BACU002389/1-1010 LMAAIQHISQ GSPGILTLRE EADAHRFNSG DLVTFSGIEG MVELNGCAPR
251 300
ENSP00000333266/1-1012 SIHVREDGSL EIGDTTTFSR YLRGGAITEV KRPKTVRHKS LDTALLQPHV
ENSBTAP00000016365/1-998 PLHVREDGTL EIGDTTAFSC YLRGGAVTEV KRAKTVSHEP LDTALLQPRV
ENSTTRP00000004615/1-1010 PLHVQRDGTL EIGDTTTFSH YLRGGAVTEV KRPKTVSHEP LDTALFQPRV
bmy_06021T0/1-1063 PLHVQRDGTL EIGDTTTFSR YLRGGAVTEV KRPKTVSHEP LDTALLQPRV
BACU002389/1-1010 PLHVQRDGTL EIGDTTTFSR YLRGGAVTEV KRPKTVSHEP LDTALLQPRV
301 350
ENSP00000333266/1-1012 VAQSSQEVHH AHCLHQAFCA LHKFQHLHGR PPQPWDPVDA ETVVGLARDL
ENSBTAP00000016365/1-998 VAQSAQKV-R ARCLHQSFRA LHKFQQLHGR PPKPWDPVDA EMVVDLAQAM
ENSTTRP00000004615/1-1010 VAQSPQEVHR AHCLHQAFHA LHKFQQLHGR PPKPWDPVDA EMVVDLAQAL
bmy_06021T0/1-1063 VAQSPQEVHR AHCLHQAFHA LHKFQQLHGR PPKPWDPVDA EMVVDLAQAL
BACU002389/1-1010 VAQSPQEVHR AHCLHQAFHA LHKFQQLHGR PPKPWDPVDA EMVVDLAQAL
351 400
ENSP00000333266/1-1012 EPLKRTEEEP LEEPLDEALV RTVALSSAGV LSPMVAMLGA VAAQEVLKAI
ENSBTAP00000016365/1-998 GPLKGTEGEP LEEQLDEALV RTVALSSAGG LSPMAAVLGA VAAQEVLKAI
ENSTTRP00000004615/1-1010 ESLKGTEGEP LEEQLDKALV RRVALSSAGG LSPMAAVLGA VAAQEVLKAV
bmy_06021T0/1-1063 ESLKGTEGEP LEEQLDKALV RTVALSSAGG LSPMAAVLGA VAAQEVLKAV
BACU002389/1-1010 ESLKGTEGEP LEEQLDKALV RTVALSSAGG LSPMAAVLGA VAAQEVLKAV
401 450
ENSP00000333266/1-1012 SRKFMPLDQW LYFDALDCLP EDGELLPSPE DCALRGSRYD GQIAVFGAGF
ENSBTAP00000016365/1-998 SGKFMPLDQW LYFDALDCLP EDGDPFPNPE DCAPRRCRYD GQTAVFGTNF
ENSTTRP00000004615/1-1010 SKKFMPLDQW LYFDALDCLP EDEEPFPNPE DYAPRDCRYD GQIAVFGAGF
bmy_06021T0/1-1063 SKKFMPLDQW LYFDALDCLP EDEEPFPNPE DYAPRDCRYD GQIAVFGAGF
BACU002389/1-1010 SKKFMPLDQW LYFDALDCLP EDEEPFPNPE DYAPRDCRYD GQIAVFGAGF
451 500
ENSP00000333266/1-1012 QEKLRRQHYL LVGAGAIGCE LLKVFALVGL GAGNSGGLTV VDMDHIERSN
ENSBTAP00000016365/1-998 QEKLSHQHYL LVGAGAVGCE LLKSFALMGL GAGDGGGVTV ADMDHVELSN
ENSTTRP00000004615/1-1010 QEKLSHQRYL LVGAGAIGCE LLKGFALVGL GAGGSGGVTV ADMDHVERSN
bmy_06021T0/1-1063 QEKLSHQHYL LVGAGAIGCE LLKGFALVGL GAGGSGGVTV ADMDHVERSN
BACU002389/1-1010 QEKLSHQHYL LVGAGAIGCE LLKGFALVGL GAGGSGGVTV ADMDHVERSN
501 550
ENSP00000333266/1-1012 LSRQFLFRSQ DVG------- ---------- ---------- ----RPKAEV
ENSBTAP00000016365/1-998 LSRQFLFRSQ DIH------- ---------- ---------- ----RKKAEV
ENSTTRP00000004615/1-1010 LSRQFLFRPQ DFG------- ---------- ---------- ----RPKAEV
bmy_06021T0/1-1063 LSRQFLFRPQ DFGVSADPSP HPCPGLSSHN APLPPPNVFL LSSQRSKAEV
BACU002389/1-1010 LSRQFLFRPQ DFG------- ---------- ---------- ----RPKAEV
551 600
ENSP00000333266/1-1012 AAAAARGLNP DLQVIPLTYP LDPTTEHIYG DNFFSRVDGV AAALDSFQAR
ENSBTAP00000016365/1-998 AAEATRRLNA DLQVTPLNLQ LDPTTEDIFG DDFFSGVNGV AAALDTFEAR
ENSTTRP00000004615/1-1010 AAEAARRLNS DLQVTPLTYQ LDLTTEHIYG DNFFSSVDGV AAALDSFQAR
bmy_06021T0/1-1063 AAEAAHRLNS DLQVTPLTYQ LDLTTEHIYG DNFFSSVDGV AAALDSFQAR
BACU002389/1-1010 AAEAAHRLNS DLQVTPLTYQ LDLTTEHIYG DNFFSSVDGV AAALDSFQAR
601 650
ENSP00000333266/1-1012 RYVAARCTHY LKPLLEAGTS GTWGSATVFM PHVTEAYRAP ASAAASEDAP
ENSBTAP00000016365/1-998 DYVAARCTHF LKPLLEAGTM GTRGSASVFI PHVTENYKAP -SDAASEDAP
ENSTTRP00000004615/1-1010 RYVAARCTHY LKPLLEAGTK GTLGSACVFI PHVTEDYRAP ASAAASEDAS
bmy_06021T0/1-1063 RYVAARCTHY LKPLLEAGTK GTLGSACVFI PHVTEDYRAP ASAAASEDAS
BACU002389/1-1010 RYVAARCTHY LKPLLEAGTK GTLGSACVFI PHVTEDYRAP ASAAASEDAS
651 700
ENSP00000333266/1-1012 YPVCTVRYFP STAEHTLQWA RHEFEELFRL SAETINHHQQ AHTSLADMDE
ENSBTAP00000016365/1-998 DPVCTVRYIP ATTEHTVQWA KGEFDDLFCE SAKTINSHPQ ALSSPEDLVK
ENSTTRP00000004615/1-1010 YPVCTVRHFP STTEHTLQWA RDEFEGLFYL SAETINCHQQ ALTSLAHLDE
bmy_06021T0/1-1063 YPVCTVRHFP STTEHTLQWA RDEFEGLFRL SAETINCHQQ AFTSLAHLDE
BACU002389/1-1010 YPVCTVRHFP STTEHTLQWA RDEFEGLFRL SAETINCHQQ AFTSLAHLDE
701 750
ENSP00000333266/1-1012 PQTLTLLKPV LGVLRVRPQN WQDCVAWALG HWKLCFHYGI KQLLRHFPPN
ENSBTAP00000016365/1-998 SQKQPLLQTM RGVLTERPQT WQDCVLWAFG HWQLRFHYGI TQLLRTYPPD
ENSTTRP00000004615/1-1010 SQVLTVQQVV LGVLRQRPQT WRDCVLWALG QWQLCFHYGI TQLLSRFPPD
bmy_06021T0/1-1063 SQVLTLQQVV LGVLRERPQT WQDCVLWALG QWQLCFHYGI TQLLSRFPPD
BACU002389/1-1010 SQVLTLQQVV LGVLRERPQT WQDCVLWALG QWQLCFHYGI TQLLSRFPPD
751 800
ENSP00000333266/1-1012 KVLEDGTPFW SGPKQCPQPL EFDTNQDTHL LYVLAAANLY AQMHGLPGSQ
ENSBTAP00000016365/1-998 KVQEDGTPFW SGPKQCPQPL KFDASQDMHL LYVLAAANLY AQMHGLPGSQ
ENSTTRP00000004615/1-1010 KVLENGTLFW SGPKQCPRPL EFDASQDTHL LYVLAAANLY AQMHGLPGSR
bmy_06021T0/1-1063 KVLEDGTLFW SGPKQCPQPL EFDASQDTHL LYVLAAANLY AQMHGLPGSR
BACU002389/1-1010 KVLEDGTLFW SGPKQCPRPL EFDASQDTHL LYVLAAASLY AQMHGLPGSR
801 850
ENSP00000333266/1-1012 DWTALRELLK LLPQPDPQQM APIFASNLEL ASASAEFGPE QQKELNKALE
ENSBTAP00000016365/1-998 DQTALRGLLN LLPLPDPQNL DRIFASELEL DS------PS GCKQLHEDLK
ENSTTRP00000004615/1-1010 DQTALRRLLK LQPLPDPQDL APIFSSDLEL ASAYAEFGPE QSKQLHEALE
bmy_06021T0/1-1063 DQTAFRRLLK LLPLPDPQDL APIFASDLEL ASAYAEFGPE QSKKLHEALE
BACU002389/1-1010 DQTAFRRLLK LLPLPDPQDL APIFASDLEL ASAYAEFGPE QSKKLHEALE
851 900
ENSP00000333266/1-1012 VWSVGPPLKP LMFEKDDDSN FHVDFVVAAA SLRCQNYGIP PVNRAQSKRI
ENSBTAP00000016365/1-998 TWSKGPPLKP LTFEKDNDSN FHVDFVVAAA SLRAQNYGIP VASHAETKRI
ENSTTRP00000004615/1-1010 IWTVGPPLEP LTFEKDND-- FHVDFVAAAA SLRAQNYGIP PADRTKTKRI
bmy_06021T0/1-1063 IWTVGPPLEP LTFEKDDD-- FHVDFVAAAA SLRAQNYGIP PADRTKTKRI
BACU002389/1-1010 IWTVGPPLEP LTFEKDDD-- FHVDFVAAAA SLRAQNYGIP PADRTKTKQI
901 950
ENSP00000333266/1-1012 VGQIIPAIAT TTAAVAGLLG LELYKVVSGP RPRSAFRHSY LHLAENYLIR
ENSBTAP00000016365/1-998 VGRIIPAVVT TTAAVAGLVG LELYKVVGGP RPRHAFRHSY LHLAENYFSR
ENSTTRP00000004615/1-1010 VGQITPAIAT TTAAVAGLVG LELYKVVGSP RPRSAFRHSY LNLAENYFSR
bmy_06021T0/1-1063 VGRITPAIAT TTAAVAGLVG LELYKVVGSP RPRSAFRHSY LNLAENYFSR
BACU002389/1-1010 VGRITPAIAT TTAAVAGLVG LELYKVVGSP RPRSAFRHSY LNLAENYFSR
951 1000
ENSP00000333266/1-1012 YMPFAPAIQT FHHLKWTSWD RLKVPAGQPE RTLESLLAHL QEQHGLRVRI
ENSBTAP00000016365/1-998 WVPKAPDIQK FHHLKWTCWD RLEVPAGQPE RTLESLLAHI QELQGLRVTM
ENSTTRP00000004615/1-1010 WVPHAPAIQK FHHWKWTCWD RLEVPAGQPE RTLESLLAHV QKLNGLRVRM
bmy_06021T0/1-1063 WVPHAPAIQE FHHWKWTCWD RLEVPAGQPE RTLESLLAHV QKLNGLRVRM
BACU002389/1-1010 WVPHAPAIQE FHHWKWTCWD RLEVPAGQPE RTLESLLAHV QKLNGLRVRM
1001 1050
ENSP00000333266/1-1012 LLHGSALLYA AGWSPEKQAQ HLPLRVTELV QQLTGQAPAP GQRVLVLELS
ENSBTAP00000016365/1-998 LLHGSALLYS AGWSEEKQTQ HLSRRVTDLV KKV------P GQRVLVLELG
ENSTTRP00000004615/1-1010 LLHGKALLYS AGWSPEKQDQ HLSRRVTDLV LEVTRQVPKP GQRVLVLELS
bmy_06021T0/1-1063 LLHGKALLYS AGWSPEKQDQ HLSRRVTDLV LEVTRQV--P EQRVLVLELS
BACU002389/1-1010 LLHGKALLYS AGWSPEKQDQ HLSRRVTDLV LEVTRQVPEP GQRVLVLELS
1051 1100
ENSP00000333266/1-1012 CEGDDEDTAF PPLHYEL
ENSBTAP00000016365/1-998 YEGEEDDTNF PRLHYKL
ENSTTRP00000004615/1-1010 YEGEKEDVTF PPLHYKL
bmy_06021T0/1-1063 YEGEKEDVTF PPLHYKL
BACU002389/1-1010 YEGEKEDVTF PPLHYKL