KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 16:58:59 2014 Check: 00 .. Name: ENSP00000261888/1-323 Len: 323 Check: 4390 Weight: 1.00 Name: ENSBTAP00000016388/1-322 Len: 323 Check: 4656 Weight: 1.00 Name: bmy_12704T0/1-307 Len: 323 Check: 2602 Weight: 1.00 Name: BACU001067/1-323 Len: 323 Check: 7313 Weight: 1.00 Name: ENSTTRP00000004714/1-265 Len: 323 Check: 3946 Weight: 1.00 // 1 50 ENSP00000261888/1-323 MQPSGWAAAR EAAGRDMLAA DLRCSLFASA LQSYKRDSVL RPFPASYARG ENSBTAP00000016388/1-322 MQPAGWAAVR EAAGRDVLAA DLRCSFFASA LRSYKRDSVL RPFPASYARH bmy_12704T0/1-307 ---------- ------MLAA DLRCSFFASA LQSYKRDSVL RPFPASYARH BACU001067/1-323 MQPASWTTVR EAAGRDVLAA DLRCSFFASA LQSYKRDSVL RPFPASYARH ENSTTRP00000004714/1-265 ---------- ---------- ---------- ---------- ---------- 51 100 ENSP00000261888/1-323 DCKDFEALLA DASKLPNLKE LLQSSGDNHK RAWDLVSWIL SSKVLTIHSA ENSBTAP00000016388/1-322 DCKDFEALLA DASKLPNLKE LLQSSGEKDP WAWDLMSWIL SSKVLTIHSA bmy_12704T0/1-307 DCKDFEALLA DASKLPNLKE LLQSSGDKDT WAWDLVSWIL SSKVLTIHSA BACU001067/1-323 DCKDFEALLA DASKLPNLKE LLQSSGDKDT WAWDLVNWIL SSKVLTIHSA ENSTTRP00000004714/1-265 --------LA DATKLPNLKE LLQSSGDKDT WAWDLVSWIL SSKVLTIHSA 101 150 ENSP00000261888/1-323 GKAEFEKIQK LTGAPHTPVP APDFLFEIEY FDPANAKFYE TKGERDLIYA ENSBTAP00000016388/1-322 GKSEFEKIQK LTGTPHSPVP VPDFLFEIEY SDPANAKFYE TKGERDLIYA bmy_12704T0/1-307 GKSEFEKIQK LTGAPHTPVP VPDFLFEIEY SDPANAKFYE TKGERDLIYA BACU001067/1-323 GKSEFEKIQK LTGAPHTPVP VPDFLFEIEY SDPANAKFYE TKGERDLIYA ENSTTRP00000004714/1-265 GKSEFEKIQK LTGAPHTPVP VPDFLFEIEY SDPANAKFYE TKGERDLIYA 151 200 ENSP00000261888/1-323 FHGSRLENFH SIIHNGLHCH LNKTSLFGEG TYLTSDLSLA LIYSPHGHGW ENSBTAP00000016388/1-322 FHGSRLENFH SIIHNGLHCH LNKTSLFGEG TYLTSDLSLA LIYSPHGHGW bmy_12704T0/1-307 FHGSRLENFH SIIHNGLHCH LNKTSLFGEG TYLTSDLSLA LIYSPHGHGW BACU001067/1-323 FHGSRLENFH SIIHNGLHCH LNKTSLFGEG TYLTSDLSLA LIYSPHGHGW ENSTTRP00000004714/1-265 FHGSRLENFH SIIHNGLHCH LNKTSLFGEG TYLTSDLSLA LIYSPHGHGW 201 250 ENSP00000261888/1-323 QHSLLGPILS CVAVCEVIDH PDVKCQTKKK DSKEIDRRRA RIKHSEGGDI ENSBTAP00000016388/1-322 QHSLLGPILS CVAVCEVIDH PDVKCQTKKK DSKEIDRRRA RIKHSEGGDV bmy_12704T0/1-307 QRSLLGPILS CVAVCEVIDH PDVKCQTKKK DSKEIDRRRA RIKHSEGGDI BACU001067/1-323 QRSLLGPILS CVAVCEVIDH PDVKCQTKKK DSREIDRRRA RIKHSEGGDI ENSTTRP00000004714/1-265 QRSLLGPILS CVAVCEVIDH PDVKCQTKKK DSREIDRRRA RIKHSEGGDI 251 300 ENSP00000261888/1-323 PPKYFVVTNN QLLRVKYLLV YSQKPPKSRA SSQLSWFSSH WFTVMISLYL ENSBTAP00000016388/1-322 PPKYFVVTNN QLLRVKYLLV YSQKQP-NRA SSQLSWVSSH WFMVMITLYL bmy_12704T0/1-307 PPKYFVVTNN QLLRVKYLLV YSQKQPKSRA SSQLSWVSSH WFTVMITLYL BACU001067/1-323 PPKYFVVTNN QLLRVKYLLV YSQKQPKSRA SSQLSWVSSH WFTVMITLYL ENSTTRP00000004714/1-265 PPKYFVVTNN QLLRVKYLLV YSQKQPKSRA SSQLSWVSSH WFTVMISLYL 301 350 ENSP00000261888/1-323 LLLLIVSVIN SSAFQHFWNR AKR ENSBTAP00000016388/1-322 LLLLTVSVIN SSAFQHFWNR AKR bmy_12704T0/1-307 LLLLIVSAIN SSAFQHFWNR VKR BACU001067/1-323 LLLLIVSVIN SSAFQHFWNR VKR ENSTTRP00000004714/1-265 LLLLIVSVIN SSAFQHFWNR VKR