KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 16:59:03 2014 Check: 00 .. Name: ENSTTRP00000015494/1-1367 Len: 1384 Check: 1475 Weight: 1.00 Name: ENSBTAP00000016421/1-1108 Len: 1384 Check: 1247 Weight: 1.00 Name: ENSP00000225719/1-1380 Len: 1384 Check: 2789 Weight: 1.00 Name: bmy_00147T0/1-1145 Len: 1384 Check: 9887 Weight: 1.00 Name: BACU010476/1-894 Len: 1384 Check: 1472 Weight: 1.00 // 1 50 ENSTTRP00000015494/1-1367 MARGWDARPP WRPGRVSLLL CLLL---LLR SPARAAHIKK AEATTTTTSA ENSBTAP00000016421/1-1108 MASGWDARPP WRPGRLPLLL CLLLLLQLLR SPARAAHIKK AEATTTTTTS ENSP00000225719/1-1380 MASGRDERPP WRLGRLLLLM CLL----LLG SSARAAHIKK AEATTTTTSA bmy_00147T0/1-1145 ---------- ---------- ---------- ---------- ---------- BACU010476/1-894 ---------- ---------- ---------- ---------- ---------- 51 100 ENSTTRP00000015494/1-1367 GAEAVKGQFD RYYHEEEXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX ENSBTAP00000016421/1-1108 AGAEDEGQFD RYYHEEELGS ALREAAAAGP PGLARLFSIG SSVEGRPLWV ENSP00000225719/1-1380 GAEAAEGQFD RYYHEEELES ALREAAAAGL PGLARLFSIG RSVEGRPLWV bmy_00147T0/1-1145 ---------- ---------- ---------- ---------- ---------- BACU010476/1-894 ---------- ---------- ---------- ---------- ---------- 101 150 ENSTTRP00000015494/1-1367 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX ENSBTAP00000016421/1-1108 LRLTAGLGPP PPDGDL---- -GPDAAGPLL PGRPQVKLVG NMHGDETVSR ENSP00000225719/1-1380 LRLTAGLGSL IPEGDAGPDA AGPDAAGPLL PGRPQVKLVG NMHGDETVSR bmy_00147T0/1-1145 ---------- ---------M DYPNHICPLF KCNSN----- ---------- BACU010476/1-894 ---------- ---------- ---------- ---------- ---------- 151 200 ENSTTRP00000015494/1-1367 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX ENSBTAP00000016421/1-1108 QVLVYLAREL AAGYRRGDPR LVRLLNTTDV YVLPSLNPDG FERAREGDCG ENSP00000225719/1-1380 QVLIYLAREL AAGYRRGDPR LVRLLNTTDV YLLPSLNPDG FERAREGDCG bmy_00147T0/1-1145 ---------- ---------- ---------- ---------- ---------- BACU010476/1-894 ---------- ---------- ---------- ---------- ---------- 201 250 ENSTTRP00000015494/1-1367 XXXXXXXXAS GRDNSRGRDL NSSFPDQ-ST DEPPSLDDVP EVRA-IEWIR ENSBTAP00000016421/1-1108 LGDSDPPG-S GRDNSRGRDL NRSFPDQFST GEPPSLDDVP EVRALIEWIR ENSP00000225719/1-1380 FGDGGPSGAS GRDNSRGRDL NRSFPDQFST GEPPALDEVP EVRALIEWIR bmy_00147T0/1-1145 ---------- ---------- ---------- ---------- ---------Q BACU010476/1-894 ---------- ---------- ---------- ---------- ---------- 251 300 ENSTTRP00000015494/1-1367 RNKFVLSGNL HGGSVVASYP FDDSPEHKAT GIYSKTSDDE VFKYLAKAYA ENSBTAP00000016421/1-1108 RNKFVLSGNL HGGSVVASYP FDDSPEHKAT GVYSKTSDDE VFRYLAKAYA ENSP00000225719/1-1380 RNKFVLSGNL HGGSVVASYP FDDSPEHKAT GIYSKTSDDE VFKYLAKAYA bmy_00147T0/1-1145 KGKFVLSGNL HGGSVVASYP FDDSPEHKAT GIYSKTSDDE VFKYLAKAYA BACU010476/1-894 ---------- ---------- ---------- ---------- ---------- 301 350 ENSTTRP00000015494/1-1367 SNHPIMKTGA PHCPGDEDET FKDGITNGAH WYDVEGGMQD YNYLWANCFE ENSBTAP00000016421/1-1108 SHHPIMKTGA PHCPGDEDET FKDGITNGAH WYDVEGGMQD YNYVWANCFE ENSP00000225719/1-1380 SNHPIMKTGE PHCPGDEDET FKDGITNGAH WYDVEGGMQD YNYVWANCFE bmy_00147T0/1-1145 SNHPIMKTGA PHCPGDEDET FKDGITNGAH WYDVEGGMQD YNYLWANCFE BACU010476/1-894 -----MKTGA PHCPGDEDET FKDGITNGAH WYDVEGGMQD YNYLWANCFE 351 400 ENSTTRP00000015494/1-1367 ITLELSCCKY PPASQ-QQEW ENNR------ ---VHIGVKG FVKDSVTGAG ENSBTAP00000016421/1-1108 ITLELSCCKY PPASQLRQEW ENNRESLITL IEKVHIGVEG FVTDSVTGAG ENSP00000225719/1-1380 ITLELSCCKY PPASQLRQEW ENNRESLITL IEKVHIGVKG FVKDSITGSG bmy_00147T0/1-1145 ITLELSCCKY PPASQLQQEW ENNRESLITL IEKVHIGVKG FVKDSVTGAG BACU010476/1-894 ITLELSCCKY PPASQLQQEW ENNR------ ---------- ---------- 401 450 ENSTTRP00000015494/1-1367 LENATISVAG INHNITTGRF GDFHRLLVPG TYNITAVLTG YMPLTVNNII ENSBTAP00000016421/1-1108 LENATISVAG INHNITTGRF GDFHRLLVPG TYNITAVLTG YMPLTVNNII ENSP00000225719/1-1380 LENATISVAG INHNITTGRF GDFYRLLVPG TYNLTVVLTG YMPLTVTNVV bmy_00147T0/1-1145 LENATISVAG INHNITTGRF GDFHRLLVPG TYNITAVLTG YMPLTVNNII BACU010476/1-894 ---------- ---------- ---------- ---------- ---------- 451 500 ENSTTRP00000015494/1-1367 VKEGPATKVN FPLRPTVASV VPDTTEVVVT ASTVAIPNSP LGTQSSHQPV ENSBTAP00000016421/1-1108 VKEGPATKVN FPLRPTVASV IPDTTEAVVT ASTVATPNSP PGTQSTHQPI ENSP00000225719/1-1380 VKEGPATEVD FSLRPTVTSV IPDTTEAVST ASTVAIPNIL SGTSSSYQPI bmy_00147T0/1-1145 VKEGPATKVN FPLRPTVASV VPDTTEVVVT ASTVAIPNSP LGTQSSHQPV BACU010476/1-894 ---------- ---------- ---------- ---------- ---------- 501 550 ENSTTRP00000015494/1-1367 QPQDFHHHHF PDMEIFLRRF ANEYPNITRL YSLGKSVESR ELYVMEISDN ENSBTAP00000016421/1-1108 QPQDFHHHHF PDMEIFLRRF ANEYPNITRL YSLGKSVESR ELYVMEISDN ENSP00000225719/1-1380 QPKDFHHHHF PDMEIFLRRF ANEYPNITRL YSLGKSVESR ELYVMEISDN bmy_00147T0/1-1145 QPQDFHHHHF PDMEIFLRRF ANEYPNITRL YSLGKSVESR ELYVMEISDN BACU010476/1-894 ---------- ---------- ---------- ---------- ---------- 551 600 ENSTTRP00000015494/1-1367 PGVHEPGEPE FKYIGNMHGN EVVGRELLLN LIEYLCKNFG TDPDVTDLVL ENSBTAP00000016421/1-1108 PGVHEPGEPE FKYIGNMHGN EVVGRELLLN LIEYLCKNFG TDPEVTDLVL ENSP00000225719/1-1380 PGVHEPGEPE FKYIGNMHGN EVVGRELLLN LIEYLCKNFG TDPEVTDLVH bmy_00147T0/1-1145 PGVHEPGEPE FKYIGNMHGN EVVGRELLLN LIEYLCKNFG TDPDATDLVL BACU010476/1-894 -------EPE FKYIGNMHGN EVVGRELLLN LIEYLCKNFG TDPDVTDLVL 601 650 ENSTTRP00000015494/1-1367 NTRIHLMPSM NPDGYEKAQE GDSISVVGRN NSNNFDLNRN FPDQFIQITD ENSBTAP00000016421/1-1108 NTRIHLMPSM NPDGYEKAQE GDLVSVIGRN NSNNFDLNRN FPDQFVQITE ENSP00000225719/1-1380 NTRIHLMPSM NPDGYEKSQE GDSISVIGRN NSNNFDLNRN FPDQFVQITD bmy_00147T0/1-1145 NTRIHLMPSM NPDGYEKAQE GDSVSVVGRN NSNNFDLNRN FPDQFIQITD BACU010476/1-894 NTRIHLMPSM NPDGYEKAQE GDSISVVGRN NSNNFDLNRN FPDQFIQITD 651 700 ENSTTRP00000015494/1-1367 PTQPETIAVM SWMKAYPFVL SANLHGGSLV VNYPFDDDEQ GLATYSKSPD ENSBTAP00000016421/1-1108 PTQPETIAVM SWMKTYPFVL SANLHGGTLV VNYPFDDDEQ GIATYSKSPD ENSP00000225719/1-1380 PTQPETIAVM SWMKSYPFVL SANLHGGSLV VNYPFDDDEQ GLATYSKSPD bmy_00147T0/1-1145 PTQPETIAVM SWMKAYPFVL SANLHGGSLV VNYPFDDDEQ GLATYSKSPD BACU010476/1-894 PTQPETIAVM SWMKAYPFVL SANLHGGSLV VNYPFDDDEQ GLATYSKSPD 701 750 ENSTTRP00000015494/1-1367 DAVFQQIALS YSKXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX ENSBTAP00000016421/1-1108 DAVFQQIALS YSKENSQMFQ GRPCKNMYPN EYFPHGITNG ASWYNVPGGM ENSP00000225719/1-1380 DAVFQQIALS YSKENSQMFQ GRPCKNMYPN EYFPHGITNG ASWYNVPGGM bmy_00147T0/1-1145 DAVFQQIALS YSKENSQMFQ GRPCKNMYPN EYFPHGITNG ASWYNVPGGM BACU010476/1-894 DAVFQQIALS YSKENSQMFQ GRPCKNMYPN EYFPHGITNG ASWYNVPGGM 751 800 ENSTTRP00000015494/1-1367 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXVHQGV ENSBTAP00000016421/1-1108 QDWNYLQTNC FEVTIELGCV KYPFEKDLPK FWAQNRRSLI QFMKQVHQGV ENSP00000225719/1-1380 QDWNYLQTNC FEVTIELGCV KYPLEKELPN FWEQNRRSLI QFMKQVHQGV bmy_00147T0/1-1145 QDWNYLQTNC FEVTIELGCV KYPFEKDLPK FWEQNRRSLI QFLKQVHQGV BACU010476/1-894 QDWNYLQTNC FEVTIELGCV KYPFEKDLPK FWEQNRRSLI QFLKQVHQGV 801 850 ENSTTRP00000015494/1-1367 KGFVLDATDG RGILNATISV AEINHPVTTY KTGDYWRLLV PGTYKITASA ENSBTAP00000016421/1-1108 KGFVLDATDG RGILNATISV AEINHPVTTY KNGDYWRLLV PGTYKITASA ENSP00000225719/1-1380 RGFVLDATDG RGILNATISV AEINHPVTTY KTGDYWRLLV PGTYKITASA bmy_00147T0/1-1145 KGFVLDATDG RGILNATISV AEINHPVTTY KTGDYWRLLV PGTYKITASA BACU010476/1-894 KGFVLDATDG RGILNATISV AEINHPVTTY KTGDYWRLLV PGTYKITASA 851 900 ENSTTRP00000015494/1-1367 RGYNPVTKNV TVNSEGAVQV NFTLVRSSTD SNNESKKGKG DSTNNEGASD ENSBTAP00000016421/1-1108 RGYNPVTKNV TVKSEGAVQV NFTLVRSSTD SNNESKKGKG DSADTDDVSD ENSP00000225719/1-1380 RGYNPVTKNV TVKSEGAIQV NFTLVRSSTD SNNESKKGKG ASSSTNDASD bmy_00147T0/1-1145 RG-SLISEEL V---GTLIEV NFTLVRSSTD SNNESKKGKG DSTNNEGASD BACU010476/1-894 RGYNPVTKNV TVNSEGAVQV NFTLVRSSTD SNNESKKGKG DSTNNEGASD 901 950 ENSTTRP00000015494/1-1367 PTTKEFETLI KDLSAENGLE GFMLRSSSN- -LALYRYHSY KDLSEFLRGL ENSBTAP00000016421/1-1108 PTTKEFEALI KDLSAENGLE RLMLRSSSN- -LALYRYHSY KDLSEFLRGL ENSP00000225719/1-1380 PTTKEFETLI KDLSAENGLE SLMLRSSSNL ALALYRYHSY KDLSEFLRGL bmy_00147T0/1-1145 PTTKEFETLI KDLSAENGLE GFMLHSSSN- -LALYRYHSY KDLSEFLRGL BACU010476/1-894 PTTKEFETLI KDLSAENGLE AFMLRSSSN- -LALYRYHSY KDLSEFLRGL 951 1000 ENSTTRP00000015494/1-1367 VMNYPHITNL TNLGQSAEYR HIWSLEISNK PNVSEPEEPK IRFVAGIHGN ENSBTAP00000016421/1-1108 VMNYPLITNL TNLGQSAEYR HIWSLEISNK PNVSEPEEPK IRFVAGIHGN ENSP00000225719/1-1380 VMNYPHITNL TNLGQSTEYR HIWSLEISNK PNVSEPEEPK IRFVAGIHGN bmy_00147T0/1-1145 VMNYPHITNL TNLGQSAEYR HIWSLEISNK PNVSEPEEPK IRFVAGIHGN BACU010476/1-894 VMNYPHITNL TNLGQSAEYR HIWSLEISNK PNVSEPEEPK IRFVAGIHGN 1001 1050 ENSTTRP00000015494/1-1367 APVGTELLLA LAEFLCLNYK KNPAVTQLVH RTRIVIVPSL NPDGRERAQE ENSBTAP00000016421/1-1108 APVGTELLLA LAEFLCLNYK KNPAVTQLVD RTRIVIVPSL NPDGREKAQE ENSP00000225719/1-1380 APVGTELLLA LAEFLCLNYK KNPAVTQLVD RTRIVIVPSL NPDGRERAQE bmy_00147T0/1-1145 APVGTELLLA LAEFLCLNYK KNPAVTQLVD RTRIVIVPSL NPDGRERAQE BACU010476/1-894 APVGTELLLA LAEFLCLNYK KNPAVTQLVD RTRIVIVPSL NPDGRERAQE 1051 1100 ENSTTRP00000015494/1-1367 KDCTSKIGQT NARGKDLDTD FTNNASQPET KAIIENLIQK QDFSLSVALD ENSBTAP00000016421/1-1108 KDCTSKTGQT NARGKDLDTD FTSNASQPET KAIIENLIQK QDFSLSVALD ENSP00000225719/1-1380 KDCTSKIGQT NARGKDLDTD FTNNASQPET KAIIENLIQK QDFSLSVALD bmy_00147T0/1-1145 KDCTSKIGQT NARGKDLDTD FTNNASQPET KAIIENLIQK QDFSLSVALD BACU010476/1-894 KDCTSKIGQT NARGKDLDTD FTNNASQPET KAIIENLIQK QDFSLSVALD 1101 1150 ENSTTRP00000015494/1-1367 GGSVLVTYPY DKPVQTVENK ETLKHLASLY ANNHPSMHMG QPSCPNKSDE ENSBTAP00000016421/1-1108 GGSVLVTYPY DKPVQT---- ---------- ---------- ---------- ENSP00000225719/1-1380 GGSMLVTYPY DKPVQTVENK ETLKHLASLY ANNHPSMHMG QPSCPNKSDE bmy_00147T0/1-1145 GGSVLVTYPY DKPVQTVENK ETLKHLASLY ANNHPSMHMG QPSCPNKSDE BACU010476/1-894 GGSVLVTYPY DKPVQTVENK ETLKHLASLY ANNHPSMHMG QPSCPNKSDE 1151 1200 ENSTTRP00000015494/1-1367 NIPGGVMRGA EWHSHLGSMK DYSVTYGHCP EITVYTSCCY FPSAAQLPSL ENSBTAP00000016421/1-1108 ---------- ---------- ---------- ---------- ---------- ENSP00000225719/1-1380 NIPGGVMRGA EWHSHLGSMK DYSVTYGHCP EITVYTSCCY FPSAARLPSL bmy_00147T0/1-1145 NIPGGVMRGA EWHSHLGSMK DYSVTYGHCP EITVYTSCCY FPSAAQLPSL BACU010476/1-894 NIPGGVMRGA EWHSHLGSMK DYSVTYGHCP EITVYTSCCY FPSAAQLPSL 1201 1250 ENSTTRP00000015494/1-1367 WAENKKSLLS MLVEVHKGVH GFVKDKTGKP ISKAVIVLNE GIKVHTKEGG ENSBTAP00000016421/1-1108 ---------- ---------- ---------- ---------- ---------- ENSP00000225719/1-1380 WADNKRSLLS MLVEVHKGVH GFVKDKTGKP ISKAVIVLNE GIKVQTKEGG bmy_00147T0/1-1145 WAENKKSLLS MLVEVHKGVH GFVKDKTGKP ISKAVIVLNE GIKVHTKEGG BACU010476/1-894 WAENKKSLLS MLVEVHKGVH GFVKDKTGKP ISKAVIVLNE GIKVHTKEGG 1251 1300 ENSTTRP00000015494/1-1367 YFHVLLAPGV HNINAIADGY QQQHSQVFVH HDAASSVVIV FDTDNRIFGL ENSBTAP00000016421/1-1108 ---------- ---------- ---------- ---------- ---------- ENSP00000225719/1-1380 YFHVLLAPGV HNIIAIADGY QQQHSQVFVH HDAASSVVIV FDTDNRIFGL bmy_00147T0/1-1145 YFHVLLAPGV HNINAIADGY QQQHSQVFVH HDAASSVVIV FDTDNRIFGL BACU010476/1-894 FFHVLLAPGV HNINAIADGY QQQHSQVFVH HDAASSVVIV FDTDNRIFGL 1301 1350 ENSTTRP00000015494/1-1367 PRELVVTVSG ATMSALILTA CIIWCICSIK SNRHKDGFHR LRQHHDEYED ENSBTAP00000016421/1-1108 ---------- ---------- ---------- ---------- ---------- ENSP00000225719/1-1380 PRELVVTVSG ATMSALILTA CIIWCICSIK SNRHKDGFHR LRQHHDEYED bmy_00147T0/1-1145 PRELVVTVSG ATMSALILTA CIIWCICSIK SNRHKDGFHR LRQHHDEYED BACU010476/1-894 PRELVVTVSG ATMSALILTA CIIWCICSIK SNRHKDGFHR LRQHHDEYED 1351 1400 ENSTTRP00000015494/1-1367 EIRMMSTGSK KSLLSHEFQD ETDTEEETLY SSKH ENSBTAP00000016421/1-1108 ---------- ---------- ---------- ---- ENSP00000225719/1-1380 EIRMMSTGSK KSLLSHEFQD ETDTEEETLY SSKH bmy_00147T0/1-1145 EIRMMSTGSK KSLLSHEFQD ETDTEEETLY SSKH BACU010476/1-894 EIRMMSTGSK KSLLSHEFQD ETDTEEETLY SSKH