KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 16:59:05 2014 Check: 00 .. Name: ENSTTRP00000010766/1-311 Len: 330 Check: 6547 Weight: 1.00 Name: ENSBTAP00000016461/1-322 Len: 330 Check: 1742 Weight: 1.00 Name: ENSP00000349446/1-330 Len: 330 Check: 7352 Weight: 1.00 Name: bmy_12938T0/1-311 Len: 330 Check: 7967 Weight: 1.00 Name: BACU014300/1-247 Len: 330 Check: 920 Weight: 1.00 // 1 50 ENSTTRP00000010766/1-311 ---------- ---------P RGGVEEGPTV LRKAGLLEKL KEQXXXXXXX ENSBTAP00000016461/1-322 MSSKPQSIGV IGAPFSKGQP RGGVEEGPTV LRKAGLLEKL KE-------- ENSP00000349446/1-330 MSAKSRTIGI IGAPFSKGQP RGGVEEGPTV LRKAGLLEKL KEQVTQNFLI bmy_12938T0/1-311 MSSKPKSIGI IGAPFSKGQP RGGVEEGPTV LRKA------ ---------- BACU014300/1-247 ---------- ---------- ---------- ---------- ---------- 51 100 ENSTTRP00000010766/1-311 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXS VGKASEQLAD VVAEIKRNGR ENSBTAP00000016461/1-322 LECDVKDYGD LSFADNLDDS PFQIVKNPRC VGKASEKLAD VVAEVKKTGR ENSP00000349446/1-330 LECDVKDYGD LPFADIPNDS PFQIVKNPRS VGKASEQLAG KVAEVKKNGR bmy_12938T0/1-311 -ECDVKDYGA LTFADVPNDS PFQMVKNPRS VGKASEQLAD VVAEIKRNGR BACU014300/1-247 --CDVKDYGA LTFADVPNDS PFQMVKNP-- ---------- ---------- 101 150 ENSTTRP00000010766/1-311 TSLVLGGDHS LAVGSISGHA RVHPDLCVIW VDAHTDINTP LTTTTGNLHG ENSBTAP00000016461/1-322 ISLVLGGDHS LAIGSISGHA RVHPDLCVIW VDAHTDINTP LTTKTGNLHG ENSP00000349446/1-330 ISLVLGGDHS LAIGSISGHA RVHPDLGVIW VDAHTDINTP LTTTSGNLHG bmy_12938T0/1-311 TSLVLGGDHS LAIGSISGHA RVHPDLCVIW VDAHTDINTP LTTTTGNLHG BACU014300/1-247 ---------S LAIGSISGHA RVHPDLCVIW VDAHTDINTP LTTTTGNLHG 151 200 ENSTTRP00000010766/1-311 QPVSFLLKEL KGKIPDVPGF SWVTPCLSAK DIVYIGLRDV DPGEHYILKI ENSBTAP00000016461/1-322 QPVSFLLKEL KEKMPEVPGF YWVAPCISAK DIVYIGLRDV DPGEHYILKT ENSP00000349446/1-330 QPVSFLLKEL KGKIPDVPGF SWVTPCISAK DIVYIGLRDV DPGEHYILKT bmy_12938T0/1-311 QPVSFLLKEL KGKMPDVPGF SWVTPCLSAK DIVYIGLRDV DPGEHYILKI BACU014300/1-247 QPVSFLLKEL KGKMPDVPGF SWVTPCLSAK DIVYIGLRDV DPGEHYILKI 201 250 ENSTTRP00000010766/1-311 LGIKYFSMTE VDKLGIGKVM EEAFSYLLGR KKRPIHLSFD VDGLDPSFTP ENSBTAP00000016461/1-322 LGIKYFSMTE VDKLGIGKVM EETFSYLLGR KKRPIHLSFD VDGLDPSFTP ENSP00000349446/1-330 LGIKYFSMTE VDRLGIGKVM EETLSYLLGR KKRPIHLSFD VDGLDPSFTP bmy_12938T0/1-311 LGIKYFSMTE VDKLGIGKVM EEAFSYLLGR KKRPIHLSFD VDGLDPSFTP BACU014300/1-247 LGIKYFSMTE VDKLGIGKVM EEAFSYLLGR KKRPIHLSFD VDGLDPSFTP 251 300 ENSTTRP00000010766/1-311 ATGTPVQGGL SYREGLYITE EIYKTGLLSG LDIMEVNPSL GKTPEEVTRT ENSBTAP00000016461/1-322 ATGTPVQGGL TYREGLYITE EIYKTGLLSG LDIMEVNPSL GKTPEEVTRT ENSP00000349446/1-330 ATGTPVVGGL TYREGLYITE EIYKTGLLSG LDIMEVNPSL GKTPEEVTRT bmy_12938T0/1-311 ATGTPVQGGL SYREGLYITE EIYKTGLLSG LDIMEVNPSL GKTPEEVTRT BACU014300/1-247 ATGTPVQGGL SYREGLYITE EIYKTGLLSG LDIMEVNPSL GKTPEEVTRT 301 350 ENSTTRP00000010766/1-311 VNTAVAITLA CFGAAREGNH KPTDYLNPPK ENSBTAP00000016461/1-322 VNTTVAITMA CFGVAREGNH KPIDYLSPPK ENSP00000349446/1-330 VNTAVAITLA CFGLAREGNH KPIDYLNPPK bmy_12938T0/1-311 VNTAVALTLA CFGVAREGNH KPTDYLTD-- BACU014300/1-247 VNTAVAITLA CFGVAREGNH KPTDYLNLPK