KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 4 Type: P Thu May 15 16:59:10 2014 Check: 00 .. Name: ENSBTAP00000016495/1-693 Len: 693 Check: 5347 Weight: 1.00 Name: bmy_01143T0/1-408 Len: 693 Check: 6593 Weight: 1.00 Name: ENSTTRP00000004516/1-588 Len: 693 Check: 6803 Weight: 1.00 Name: BACU000842/1-693 Len: 693 Check: 3914 Weight: 1.00 // 1 50 ENSBTAP00000016495/1-693 MMKRQLHRMR QLAHTGSLGR TPETAEFLGE DLQQVEQRLE PAKRAAHNVH bmy_01143T0/1-408 MMKRQLHRMR QLAHTGSLGR TPETAEFLGE DLQQVEQRLE PAKRAAHNVH ENSTTRP00000004516/1-588 MMKRQLHRMR QLAHTGSLGR TPETAEFLGE DLQQVEQRLE PAKRAAHNVH BACU000842/1-693 MMKRQLHRMR QLAHTGSLGR TSETAEFLGE DLQQVEQRLE PAKRAAHNVH 51 100 ENSBTAP00000016495/1-693 KRLQACLQGQ SGADMDKRVK KLPLMALSTT MAESFKELDP DSSMGKALEM bmy_01143T0/1-408 KRLQACLQGQ SGADMDKRVK KLPLMALSTT MAESFKELDP DSSMGKALEM ENSTTRP00000004516/1-588 KRLQACLQGQ SGADMDKRVK KLPLMALSTT MAESFKELDP DSSMGKALEM BACU000842/1-693 KRLQACLQGQ SGADMDKRVK KLPLMALSTT MAESFKELDP DSSMGKALEM 101 150 ENSBTAP00000016495/1-693 SCAIQNQLAR ILAEFEMTLE RDVLQPLNRL SEEELPAILK HKKSLQKLVS bmy_01143T0/1-408 SCAIQNQLAR ILAELEMTLE RDVLQPLNRL SE-------- ---------- ENSTTRP00000004516/1-588 SCAIQNQLAR ILAEFEMTLE RDVLQPLNRL SEEELPAILK HKKSLQKLVS BACU000842/1-693 SCAIQNQLAR ILAELEMTLE RDVLQPLNRL SEEELPAILK HKKSLQKLVS 151 200 ENSBTAP00000016495/1-693 DWNTLKSRLS QAAKNSGSGQ GLGGGPGSHT ATANKVETLK EEEEELKRKV bmy_01143T0/1-408 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000004516/1-588 DWNTLKSRLS QAAKNSGSGQ GLGGGPGSYT TTANKVEMLK DEEEELKRKV BACU000842/1-693 DWNTLKSRLS QAAKNSGSGQ GLGGGPGSYT TTANKVEMLK EEEEELKRKV 201 250 ENSBTAP00000016495/1-693 EQCKDEYLAD LYHFATKEDT YANYFIHLME IQADYHRKSL SSLDTALAEL bmy_01143T0/1-408 ----DEYLAD LYHFATKEDT YANYFIHLME IQADYHRKSL SSLDTALAEL ENSTTRP00000004516/1-588 EQCKDEYLAD LYHFATKEDT YANHFIHLME IQADYHRKSL SSLDTALAEL BACU000842/1-693 EQCKDEYLAD LYHFATKEDT YANYFIHLME IQADYHRKSL SSLDTALAEL 251 300 ENSBTAP00000016495/1-693 RENHSQTDPS PSMTATPFSR VYGVPLGIHL RELGRDIALP IEACVMMLLS bmy_01143T0/1-408 RENHSQTDPS PSMMAAPFSR VYGVPLGTHL RELGRDIALP IEACVMMLLS ENSTTRP00000004516/1-588 RENHSQTDPS PSMMAAPFSR VYGVPLGTHL RELGRDIALP IEACVMMLLS BACU000842/1-693 RENHSQTDPS PSMMAAPFSR VYGVPLGTHL RELGRDIALP IEACVMMLLS 301 350 ENSBTAP00000016495/1-693 EGMKEEGLFR LAAGASVLKR LKQTMASDPR SLQEFCSDPH AVAGALKSYL bmy_01143T0/1-408 EGMKEEGLFR LAAGASVLKR LKQTMASDPC SLQEFCSDPH AVAGALKSYL ENSTTRP00000004516/1-588 EGMKEEGLFR LGAGASVLKR LKQTMASDPR -LQ--CSDPH AVAGALKSYL BACU000842/1-693 EGMKEEGLFR LAAGASVLKR LKQTMASDPC SLQEFCSDPH AVAGALKSYL 351 400 ENSBTAP00000016495/1-693 RELPEPLMTF DLYDDWMRAA SLKEPGARLE ALQEVCSRLP HENLSNLRYL bmy_01143T0/1-408 RELPEPLMTF DLYDDWMRAA SLKEPGARLE ALQEVCSRLP RENLSNLRYL ENSTTRP00000004516/1-588 RELPEPLMTF DLYDDWMRAA SLKEPGARLE ALQEVCSRLP RENLSNLRYL BACU000842/1-693 RELPEPLMTF DLYDDWMRAS SLKEPGARLE ALQEVCSRLP RENLSNLRYL 401 450 ENSBTAP00000016495/1-693 MKFLAQLAEE QEVNKMTPSN IAIVLGPNLL WPPEKDGDLA QLDAASVSSI bmy_01143T0/1-408 MKFLARLAEE QEVNKMTPSN IAIVLGPNLL WPPEKEG--- ---------- ENSTTRP00000004516/1-588 MKFLALLAEA QEVNKMTPSN IAIVLGPNLL WPPEKEGDLA QLDAASVSSI BACU000842/1-693 MKFLARLAEE QEVNKMTPSN IAIVLGPNLL WPPEKEGDLA QLDAASVSSI 451 500 ENSBTAP00000016495/1-693 QVVGVVEALI QNTDTLFPGD INFNVSGLFS APAPQDKVSD RPASEELPSI bmy_01143T0/1-408 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000004516/1-588 QVVGMVEALI QNADTLFPGD INFNVSGLFS APAPQDKVSD RPASEELPSI BACU000842/1-693 QVVGMVEALI QNADTLFPGD INFNVSGLFS GPAPQDKVSD RPASEELPSI 501 550 ENSBTAP00000016495/1-693 PTPTPATVPA LGLAPAPASV ATKERAESEA PHRPTSPRVS RSPPEAAAPA bmy_01143T0/1-408 ---------- ---------- -----AESEA PPRPASPKVS RSSLEAAAPT ENSTTRP00000004516/1-588 ATPTPAPVPA PAPAPAPASV ALKERAESEA PPRPASPKVS RSSLEAATPT BACU000842/1-693 ATPTPAAVPA PASAPAPASV ALKERAESEA PPRPASPKVS RSSLEAAAPT 551 600 ENSBTAP00000016495/1-693 EETARRTKRP APARPTMPPP QVSGTRSSPP APLPPPGSGS PVTPRALPRR bmy_01143T0/1-408 EDMARRSE-- ---------- ---------- --LAVGGEGG QR-------- ENSTTRP00000004516/1-588 EDMARRTKRP APARPTMPPP QVSSARGSPP APPPPPGSGS P--------- BACU000842/1-693 EDMARRTKRP APARPTMPPP QVSSTRGSPP APPPPPGSGS PVTPRALRRR 601 650 ENSBTAP00000016495/1-693 LVGSSLRAPT VPPPLPPTAP QPARRQSRHS PASPSPASPG LASLSPVTLS bmy_01143T0/1-408 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000004516/1-588 ---------- ---------- ---------- ---------- ---------- BACU000842/1-693 LVGSSLRAPT VPPPLPPTAP QPARRQSRPP PASPSPASPG PTSLIPVSLS 651 700 ENSBTAP00000016495/1-693 SPTHVDLGAA TEEGEGPEAA GRAPTAPVIP PQARPRSLAS ETN bmy_01143T0/1-408 ---------- ---------- ---------- ---------- --- ENSTTRP00000004516/1-588 ---------- ---------- ---------- ---------- --- BACU000842/1-693 APTDVDLGAA AEEGGAPEAA GRAPTPPVIP PQPRPRSLAS ETD