KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 16:59:12 2014 Check: 00 .. Name: bmy_16660T0/1-273 Len: 316 Check: 6454 Weight: 1.00 Name: ENSP00000311010/1-265 Len: 316 Check: 6663 Weight: 1.00 Name: ENSBTAP00000016534/1-255 Len: 316 Check: 9568 Weight: 1.00 Name: BACU008896/1-286 Len: 316 Check: 9706 Weight: 1.00 Name: ENSTTRP00000001369/1-261 Len: 316 Check: 7923 Weight: 1.00 // 1 50 bmy_16660T0/1-273 MTTSEDQSLA QPG------- --GTSEQRQL ECGRPFGETD SNCRGS---V ENSP00000311010/1-265 MPSLPH---- ---------- ---------- ---------- ---------- ENSBTAP00000016534/1-255 ---------- ---------- ---------- ---------- ---------- BACU008896/1-286 MPIHTKLQSE ERVVGALCRA KFGFPGRRDV CISKEWGFTR CNADESEAVA ENSTTRP00000001369/1-261 TP-------- ---------- ---------- ---------- ---------- 51 100 bmy_16660T0/1-273 DGQVMLDSVA HSAFLPNASF CDPLMSWTDL FSNEEYYPAF EHQTACDSYW ENSP00000311010/1-265 SHRVMLDSVT HSTFLPNASF CDPLMSWTDL FSNEEYYPAF EHQTACDSYW ENSBTAP00000016534/1-255 ----MLDSVT HSTFLPNTSF CDPLMSWTDL FSNEEYYPAF EHQTACDSYW BACU008896/1-286 AERVMLDSVA HSTFLPNASF CDPLMSWTDL FSNEEYYPAF EHQTACDSYW ENSTTRP00000001369/1-261 SQRVMLDSVT HSTFLPNASF CDPLMSWTDL FSNEEYYPAF EHQTACDSYW 101 150 bmy_16660T0/1-273 TSVHPEYWTK RHVWEWLQFC CDQYKLDANC ISFCHFNISG LQLCS----- ENSP00000311010/1-265 TSVHPEYWTK RHVWEWLQFC CDQYKLDTNC ISFCNFNISG LQLCSMTQEE ENSBTAP00000016534/1-255 TSVHPEYWTK RHVWEWLQFC CDQYKLDANC ISFCHFNISG LQLCGMTQEE BACU008896/1-286 TSVHPEYWTK RHVWEWLQFC CDQYKLDANC ISFCHFNISG LQLCSMTQEE ENSTTRP00000001369/1-261 PSVHPEYWTK RHVWEWLQFC CDQYKLDANC ISFCHFNVSG LQLCSMTQEE 151 200 bmy_16660T0/1-273 ---------- ---------- ---YSFFNDP EETKXTIKDY AVSSCLKTSX ENSP00000311010/1-265 FVEAAGLCGE YLYFILQNIR TQGYSFFNDA EESKATIKDY ADSNCLKTSG ENSBTAP00000016534/1-255 FMEAAGVCGE YLYFILQSIR SQGYSFFNDP DETKATLKDY ADSSCLKTSG BACU008896/1-286 FIEAAGVCGE YLYFILQNIR SQGYSFFNDP EETKATIKD- ---------- ENSTTRP00000001369/1-261 FIEAAGVCGE YLYFILQSMR SQGYSFFNDP EETKATIKDY AVSSCLKTSG 201 250 bmy_16660T0/1-273 IKSQDCHSHS RTSLQSSHLW EFVRDLLLSP EENCGILEWE DREQGIFRVV ENSP00000311010/1-265 IKSQDCHSHS RTSLQSSHLW EFVRDLLLSP EENCGILEWE DREQGIFRVV ENSBTAP00000016534/1-255 IKSQDCHSHS RTSLQSSHLW EFVRDLLLSP EENCGILEWE DREQGIFRVV BACU008896/1-286 ---------- --CLQSSHLW EFVRDLLLSP EENCGILEWE DREQGIFRVV ENSTTRP00000001369/1-261 IKSQDCHSHS RTSLQSSHLW EFVRDLLLSP EENCGILEWE DREQGIFRVV 251 300 bmy_16660T0/1-273 KSEALAKMWG QRKRNDRMTY EKLSRALR-- WEASDVPRVD RRL-HQFPNH ENSP00000311010/1-265 KSEALAKMWG QRKKNDRMTY EKLSRALRYY YKTGILERVD RRLVYKFGKN ENSBTAP00000016534/1-255 KSEALAKMWG QRKKNDRMTY EKLSRALRYY YKTGILERVD RRLVYKFGKN BACU008896/1-286 KSEALAKMWG QRKRNDRMTY EKLSRALRYY YKTGILERVD RRLVYKFGKN ENSTTRP00000001369/1-261 KSEALAKMWG QRKRNDRMTY EKLSRALRYY YKTGILERVD RRLVYKFGKN 301 350 bmy_16660T0/1-273 LCFYDSSSQH DKIVIH ENSP00000311010/1-265 ----AHGWQE DKL--- ENSBTAP00000016534/1-255 ----AHGWQE DKL--- BACU008896/1-286 ----AHGWQE DKL--- ENSTTRP00000001369/1-261 ----AHGWQE DKL---