KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 16:59:13 2014 Check: 00 .. Name: ENSP00000311221/1-289 Len: 289 Check: 3438 Weight: 1.00 Name: ENSBTAP00000016535/1-289 Len: 289 Check: 2868 Weight: 1.00 Name: ENSTTRP00000004637/1-283 Len: 289 Check: 4845 Weight: 1.00 Name: bmy_07262T0/1-268 Len: 289 Check: 2901 Weight: 1.00 Name: BACU008798/1-268 Len: 289 Check: 2059 Weight: 1.00 // 1 50 ENSP00000311221/1-289 MILLQHAVLP PPKQPSPSPP MSVATRSTGT LQLPPQKPFG QEASLPLAGE ENSBTAP00000016535/1-289 MILLQHAGLP PPKRPSSSPP MSVAARSTGA LQLPPQKPFG QEASLPLAGE ENSTTRP00000004637/1-283 MILLQHAGLP PPKRPSSSPP MSVAARSTGT LPLPPQKSFG QEASLPLAGE bmy_07262T0/1-268 ---------- ---------- MSVAARSTGT LPLPPQKPFG QEASLPLAGE BACU008798/1-268 ---------- ---------- MSVAARSTGT LPIPPQKPFG QEASLPLAGE 51 100 ENSP00000311221/1-289 EELSKGGEQD CALEELCKPL YCKLCNVTLN SAQQAQAHYQ GKNHGKKLRN ENSBTAP00000016535/1-289 EEPPKGGEQD TALEELCKPL YCKLCNVTLN SAQQAQAHYQ GKNHGKKLRN ENSTTRP00000004637/1-283 EELPKGGEQD TALEELCKPL YCKLCNVTLN SAQQAQAHYQ GKNHGKKLRN bmy_07262T0/1-268 EELPKGGEQD TALEELCKPL YCKLCNVTLN SAQQAQAHYQ GKNHGKKLRN BACU008798/1-268 EELPKGGEQD TALEELCKPL YCKLCNVTLN SAQQAQAHYQ GKNHGKKLRN 101 150 ENSP00000311221/1-289 YYAANSCPPP ARMSNVVEPA ATPVVPVPPQ MGSFKPGGRV ILATENDYCK ENSBTAP00000016535/1-289 YYAANSCPPP ARMSNAVEAV AAPAVSVPPQ MGSFKPGGRV ILATENDYCK ENSTTRP00000004637/1-283 YYAANSCPPP ARMSNAVEPV ATPAVPVPPQ MSSFKPGGRV ILATENDYCK bmy_07262T0/1-268 YYAANSCPPP ARMSNAVEPV ATXAVPVPXQ MSSFKPGGRV ILATENDYCK BACU008798/1-268 YYAANSCPPP ARMSNAVEPV ATPAVPVPPQ MSSFKPGGRV ILATENDYCK 151 200 ENSP00000311221/1-289 LCDASFSSPA VAQAHYQGKN HAKRLRLAEA QSNSFSESSE LGQRRARKEG ENSBTAP00000016535/1-289 LCDASFSSPA VAQAHYQGKN HAKRLRLAEA QSNSFSDSSE VGQRRTRKEG ENSTTRP00000004637/1-283 LCDASFSSPA VAQAHYQG-- HAKRLLTAQS S----SESSE IGQRRTRKEG bmy_07262T0/1-268 LCDASFSSPA VAQAHYQGKN HAKRLRLAEA QSNSFSESSE VGQRRTRKEG BACU008798/1-268 LCDASFSSPA VAQAHYQGKN HAKRLRLAEA QSNSFSESSE VGQRRTRKEG 201 250 ENSP00000311221/1-289 NEFKMMPNRR NMYTVQNNSA GPYFNPRSRQ RIPRDLAMCV TPSGQFYCSM ENSBTAP00000016535/1-289 NEYKMMPNRR NMYAVQNNSA GPYFNPRSRQ RIPRDLAMCV TPSGQFYCSM ENSTTRP00000004637/1-283 NEYKMMPNRR NMYAVQNNSA GPYFNPRSRQ RIPRDLAMCV TPSGQFYCSM bmy_07262T0/1-268 NEYKMMPNRR NMYAVQNNS- GPYFNPRSRQ RIPRDLAMCV TPSGQFYCSM BACU008798/1-268 NEYKMMPNRR NMYAVQNNS- GPYFNPRSRQ RIPRDLAMCV TPSGQFYCSM 251 300 ENSP00000311221/1-289 CNVGAGEEME FRQHLESKQH KSKVSEQRYR NEMENLGYV ENSBTAP00000016535/1-289 CNVGAGEEVE FRQHLESKQH KSKVSEQRYR NEMENLGYV ENSTTRP00000004637/1-283 CNVGAGEEME FRQHLESKQH KSKVSEQRYR NEMENLGYV bmy_07262T0/1-268 CNVGAGEEME FRQHLESKQH KSKVSEQRYR NEMENLGYV BACU008798/1-268 CNVGAGEEME FRQHLESKQH KSKVSEQRYR NEMENLGYV