KEY:
ENSP* - Homo sapiens (Human)
ENSBTA* - Bos taurus (Cow)
ENSTTR* - Tursiops truncatus (Dolphin)
bmy_* - Balaena mysticetus (Bowhead whale)
BACU* - Balaenoptera acutorostrata (Minke whale)
Copy from below the line for a valid .msf file.
----------------------------------------------------------------------------------
NoName MSF: 5 Type: P Thu May 15 16:59:13 2014 Check: 00 ..
Name: ENSP00000296280/1-728 Len: 898 Check: 1728 Weight: 1.00
Name: ENSTTRP00000008531/1-829 Len: 898 Check: 7009 Weight: 1.00
Name: ENSBTAP00000016545/1-728 Len: 898 Check: 8964 Weight: 1.00
Name: bmy_04471T0/1-821 Len: 898 Check: 6393 Weight: 1.00
Name: BACU016537/1-756 Len: 898 Check: 2942 Weight: 1.00
//
1 50
ENSP00000296280/1-728 ---------- ---------- ---------- ---------- ----------
ENSTTRP00000008531/1-829 KQPYGMKEGP GEADLLRKKT DSVVRFLCVY EQVREEREGK GRGREGERGS
ENSBTAP00000016545/1-728 ---------- ---------- ---------- ---------- ----------
bmy_04471T0/1-821 ---------- -----MYNGT KAWMGMACSQ NDLPQHG--- ----------
BACU016537/1-756 ---------- -----MYNGT KAWMGMACFQ NDLPQHG--- ----------
51 100
ENSP00000296280/1-728 ---------- ---------- ---------- ---------- ----------
ENSTTRP00000008531/1-829 VAGRGRRDLN GECQPIPETH RDLRTKIRHR HHTGDELADK SGRGDQAARS
ENSBTAP00000016545/1-728 ---------- ---------- ---------- ---------- ----------
bmy_04471T0/1-821 ---------- ---------- ---------- ---------- ---------C
BACU016537/1-756 ---------- ---------- ---------- ---------- ---------C
101 150
ENSP00000296280/1-728 -----MRWLL LYYALCFSLS KASAHTVELN NMFGQIQSPG YPDSYPSDSE
ENSTTRP00000008531/1-829 TQGRKMRWLL LSHALCFSLL KALAHIVELN NMFGQIQSPG YPDSYPSDSE
ENSBTAP00000016545/1-728 -----MRWLL LSHALCFSLL KASAHIVELN NMFGQIQSPG YPDAYPSDSE
bmy_04471T0/1-821 YEMKLDRWLL LSHALCFSLL KALAHIVELN NMFGQIQSPG YPDSYPSDSE
BACU016537/1-756 YEMKLDRWLL LSHALCFSLL KALAHVVELN NMFGQIQSPG YPDSYPSDSE
151 200
ENSP00000296280/1-728 VTWNITVPDG FRIKLYFMHF NLESSYLCEY DYVKVETEDQ VLATFCGRET
ENSTTRP00000008531/1-829 VTWNITVPEG FRIKLYFMHF NLESSYLCEY DYVKVETEEQ VLATFCGRET
ENSBTAP00000016545/1-728 VTWNITVPEG FRIKLYFMHF NLESSYLCEY DYVKVETEDQ VLATFCGRET
bmy_04471T0/1-821 VTWNITVPEG FRIKLYFMHF NLESSYLCEY DYVKVETEDQ VLATFCGRET
BACU016537/1-756 VTWNITVPEG FRIKLYFMHF NLESSYLCEY DYVKVETEDQ VLATFCGRET
201 250
ENSP00000296280/1-728 TDTEQTPGQE VVLSPGSFMS ITFRSDFSNE ERFTGFDAHY MAVDVDECKE
ENSTTRP00000008531/1-829 TDTEQTPGQE VVLSPGSFMS ITFRSDFSNE ERFTGFEAHY MAVDVDECME
ENSBTAP00000016545/1-728 TDTEQTPGQE VVLSPGSFMS ITFRSDFSDE ERFTGFDAHY VAVDVDECTE
bmy_04471T0/1-821 TDTEQXPGQE VVLSPGSFMS ITFRSDFSNE ERFTGFDAHY MAVDVDECTE
BACU016537/1-756 TDTEQTPGQE VVLSPGSFMS ITFRSDFSNE ERFTGFDAHY MAVDVDECTE
251 300
ENSP00000296280/1-728 REDEELSCDH YCHNYIGGYY CSCRFGYILH TDNRTCRVEC SDNLFTQRTG
ENSTTRP00000008531/1-829 QEDEELSCDH YCHNYIGGYY CSCRVGYILH TDNRTCRVEC SDNLFTQRTD
ENSBTAP00000016545/1-728 REDEELSCDH YCHNYIGGYY CSCRFGYILH TDNRTCRVEC SDNLFTQRTG
bmy_04471T0/1-821 REDEELSCDH YCHNYIGGYY CSCRFGYILH TDNRTCRVEC SDNLFTQRAG
BACU016537/1-756 REDEELSCDH YCHNYIGGYY CSCRFGYILH TDNRTCRVEC SDNLFTQRTG
301 350
ENSP00000296280/1-728 VITSPDFPNP YPKSSECLYT IELEEGFMVN LQFEDIFDIE DHPEVPCPYD
ENSTTRP00000008531/1-829 VITSPDFPSP YP-SSECVYT IELEEGFMI- LQ-EDIFDIE DH-EVSCPYD
ENSBTAP00000016545/1-728 VITSPDFPSP YPKSSECLYT IELEEGFMIS LQFEDIFDIE DHPEVSCPYD
bmy_04471T0/1-821 VITSPDFPSP YPKSSECLYT IELEEGFMIS LQFEDIFDIE DHPEVSCPYD
BACU016537/1-756 EITSPDFPSP YPKSSECLYT IELEEGFMIS LQFEDIFDIE DHPEVSCPYD
351 400
ENSP00000296280/1-728 YIKIKVGPKV LGPFCGEKAP EPISTQSHSV LILFHSDNSG ENRGWRLSYR
ENSTTRP00000008531/1-829 YIKIKTGPKV LGPFCGEKAP EPINTQSHSV QILFRSDNSG ENRGWRLLYR
ENSBTAP00000016545/1-728 YIKIKAGPKV LGPFCGEKAP EPINTQSHSI QILFRSDNSG ENRGWRLSYR
bmy_04471T0/1-821 YIKIKTGPKV LGPFCGEKAP EPINTQSHSV QILFRSDNSG ENRGWRLLYR
BACU016537/1-756 YIKIKTGPKV LGPFCGEKAP EPINTQSHSV QILFRSDNSG ENRGWRLLYR
401 450
ENSP00000296280/1-728 AAGNECPELQ PPVHGKIEPS QAKYFFKDQV LVSCDTGYKV LKDNVEMDTF
ENSTTRP00000008531/1-829 ATGNECPKLQ PPVHGNIEPL QAKYFFKDQV LISCDTGHKV LKDNVEMDTF
ENSBTAP00000016545/1-728 ATGNECPKLQ PPVHGKIEPL QTTYSFKDQV LISCDTGYKV LKDNVEMDTF
bmy_04471T0/1-821 ATGNECPKLQ PPVDGKIEPL QAKYFFKDQV LVSCDTGYKV LKDNVEMDTF
BACU016537/1-756 ATGNECPKLQ PPVDGKIEPL QAKYFFKDQV LVSCDTGYQV LKDNVEMETF
451 500
ENSP00000296280/1-728 QIECLKDGTW SNKIPTCK-- ---------- ---------- ----------
ENSTTRP00000008531/1-829 QIECLKDGTW SNKIPTCK-- ---------- ---------- ----------
ENSBTAP00000016545/1-728 QMECLKDGTW SSKIPTCK-- ---------- ---------- ----------
bmy_04471T0/1-821 QIECLKDGTW SNKIPTCKSK KTPSVDYKDH ELPSTGGIRA EPTQGGNPGR
BACU016537/1-756 QIECLKDGTW SNEIPTCK-- ---------- ---------- ----------
501 550
ENSP00000296280/1-728 ---------- ---------- ---------- ---IVDCRAP GELEHGLITF
ENSTTRP00000008531/1-829 ---------- ---------- ---------- ---IVDCGAP AELENGLVTF
ENSBTAP00000016545/1-728 ---------- ---------- ---------- ---IADCGAP AELENGVVTF
bmy_04471T0/1-821 KPQDCVNVSS GRQVKKDMSE GKQMAGRVTV ETGFVDCGAP AELENGLVTF
BACU016537/1-756 ---------- ---------- ---------- ---IVDCGAP AELENGLVTF
551 600
ENSP00000296280/1-728 STRNNLTTYK SEIKYSCQEP YYKMLNNNTG IYTCSAQGVW MNKVLGRSLP
ENSTTRP00000008531/1-829 STRNNLTTYK SEIRYSCQQP YYKMLHSITD VYTCSAQGVW MNEVLGRSQP
ENSBTAP00000016545/1-728 STRNNLTTYK SEIRYSCQRP YYKMLHNTTG VYTCSAQGVW MNEVLGRSQP
bmy_04471T0/1-821 STRNNLTTYK SEIRYSCQQP YYKMLHSITD VYTCSAQGVW MNEVLGRSQP
BACU016537/1-756 STRNNLTTYK SEIRYSCQQP YYKMLHSITD VYTCSAQGVW MNEVLGRSQP
601 650
ENSP00000296280/1-728 TCLPECGQPS RSLPSLVKRI IGGRNAEPGL FPWQALIVVE DTSRVPNDKW
ENSTTRP00000008531/1-829 TCLPACGQPS RSLPNLVKRI IGGRNAEPGL FPWQALIVVE DTSRVPNDKW
ENSBTAP00000016545/1-728 TCLPVCGQPS RSLPNLVKRI IGGRNAEPGL FPWQALIVVE DTSRVPNDKW
bmy_04471T0/1-821 TCLPVCGQPS RSLPNLVKRI IGGRNAEPGL FPWQALIVVE DTSRVPNDKW
BACU016537/1-756 TCLPVCGQPS RSLPNLVKRI IGGRNAEPGL FPWQALIVVE DTSRVPNDKW
651 700
ENSP00000296280/1-728 FGSGALLSAS WILTAAHVLR SQRRDTTVIP VSKEHVTVYL GLHDVRDKSG
ENSTTRP00000008531/1-829 FGSGALLSES WILTAAHVLR SQRRDNTVTP VSKEHVTVYL GLHDVRDKSG
ENSBTAP00000016545/1-728 FGSGALLSES WILTAAHVLR SQRRDNTVTP VSKEHVTVHL GLHDVRDKSG
bmy_04471T0/1-821 FGSGALLSES WILTAAHVLR SQRRDNTVTP VSKEHVTVYL GLHDVRDKSG
BACU016537/1-756 FGSGALLSES WILTAAHVLR SQRRDNTVTP VSKEHVTVYL GLHDVRDKSE
701 750
ENSP00000296280/1-728 AVNSSAARVV LHPDFNIQNY NHDIALVQLQ EPVPLGPHVM PVCLPRLEPE
ENSTTRP00000008531/1-829 AVNSSAARVV LHPDFDIQNY NHDIALVQLR EPVPLGPHIM PVCLPRPEPE
ENSBTAP00000016545/1-728 AVNSSAARVV LHPDFNIQSY NHDIALVQLR EPVPLGPHIL PVCLPPPEPA
bmy_04471T0/1-821 AVNSSAARVV LHPDFDIQNY NHDIALVQLR EPVPLGPHIM PVCLPQPEPE
BACU016537/1-756 AVNSSAARVV LHPDFDIQNY NHDIALVQLR EPVPLGPHIM PVCLPRPEPE
751 800
ENSP00000296280/1-728 GPAPHMLGLV AGWGISNPNV TVDEIISSGT RTLSDVLQYV KLPVVPHAEC
ENSTTRP00000008531/1-829 GPAPHMLGLV AGWGISNPNV TVDEIISSGT RTLSDVLQYV KLPVVPHAEC
ENSBTAP00000016545/1-728 GPAPHVLGLV AGWGISNPNV TVDEIIGSGT RTLSDVLQYV KLPVVPHAEC
bmy_04471T0/1-821 GPAPHMLGLV AGWGISNPNV TVDEIISSGT RTLSDVLQYV KLPVVPHAEC
BACU016537/1-756 GPAPHMLGLV AGWGISNPNV TVDEIISSGT RTLSDVLQYV KLPVVPHAEC
801 850
ENSP00000296280/1-728 KTSYESRSGN YSVTENMFCA GYYEGGKDTC LGDSGGAFVI FDDLSQRWVV
ENSTTRP00000008531/1-829 KTSYESRSGN YSVTENMFCA GYYEGGKDTC LGDSGGAFVI LDDSSQRWVA
ENSBTAP00000016545/1-728 KTSYESRSGN YSVTENMFCA GYYEGGKDTC LGDSGGAFVI LDDASQRWVA
bmy_04471T0/1-821 KTSYESRSGN YSVTENMFCA GYYEGGKDTC LGDSGGAFVV LDDSSQRWVA
BACU016537/1-756 KTSYESRSGN YSVTENMFCA GYYEGGKDTC LGDSGGAFVV LDDSSQRWVA
851 900
ENSP00000296280/1-728 QGLVSWGGPE ECGSKQVYGV YTKVSNYVDW VWEQMGLPQS VVEPQVER
ENSTTRP00000008531/1-829 QGLVSWGGPE ECGSKQVYGV YTKVSNYVDW VWEQIGSPQG LGELQVER
ENSBTAP00000016545/1-728 QGLVSWGGPE ECGSKQVYGV YTKVSNYVDW VWEQMGSPQG LGELQVER
bmy_04471T0/1-821 QGLVSWGGPE ECGSKQVYGV YTKVSNYVDW VWEQIGSPRG LGELQVER
BACU016537/1-756 QGLVSWGGPE ECGSKQVYGV YTKVSNYVDW VWGQIGSPRG LGELQVER