KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 16:59:13 2014 Check: 00 .. Name: ENSP00000296280/1-728 Len: 898 Check: 1728 Weight: 1.00 Name: ENSTTRP00000008531/1-829 Len: 898 Check: 7009 Weight: 1.00 Name: ENSBTAP00000016545/1-728 Len: 898 Check: 8964 Weight: 1.00 Name: bmy_04471T0/1-821 Len: 898 Check: 6393 Weight: 1.00 Name: BACU016537/1-756 Len: 898 Check: 2942 Weight: 1.00 // 1 50 ENSP00000296280/1-728 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000008531/1-829 KQPYGMKEGP GEADLLRKKT DSVVRFLCVY EQVREEREGK GRGREGERGS ENSBTAP00000016545/1-728 ---------- ---------- ---------- ---------- ---------- bmy_04471T0/1-821 ---------- -----MYNGT KAWMGMACSQ NDLPQHG--- ---------- BACU016537/1-756 ---------- -----MYNGT KAWMGMACFQ NDLPQHG--- ---------- 51 100 ENSP00000296280/1-728 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000008531/1-829 VAGRGRRDLN GECQPIPETH RDLRTKIRHR HHTGDELADK SGRGDQAARS ENSBTAP00000016545/1-728 ---------- ---------- ---------- ---------- ---------- bmy_04471T0/1-821 ---------- ---------- ---------- ---------- ---------C BACU016537/1-756 ---------- ---------- ---------- ---------- ---------C 101 150 ENSP00000296280/1-728 -----MRWLL LYYALCFSLS KASAHTVELN NMFGQIQSPG YPDSYPSDSE ENSTTRP00000008531/1-829 TQGRKMRWLL LSHALCFSLL KALAHIVELN NMFGQIQSPG YPDSYPSDSE ENSBTAP00000016545/1-728 -----MRWLL LSHALCFSLL KASAHIVELN NMFGQIQSPG YPDAYPSDSE bmy_04471T0/1-821 YEMKLDRWLL LSHALCFSLL KALAHIVELN NMFGQIQSPG YPDSYPSDSE BACU016537/1-756 YEMKLDRWLL LSHALCFSLL KALAHVVELN NMFGQIQSPG YPDSYPSDSE 151 200 ENSP00000296280/1-728 VTWNITVPDG FRIKLYFMHF NLESSYLCEY DYVKVETEDQ VLATFCGRET ENSTTRP00000008531/1-829 VTWNITVPEG FRIKLYFMHF NLESSYLCEY DYVKVETEEQ VLATFCGRET ENSBTAP00000016545/1-728 VTWNITVPEG FRIKLYFMHF NLESSYLCEY DYVKVETEDQ VLATFCGRET bmy_04471T0/1-821 VTWNITVPEG FRIKLYFMHF NLESSYLCEY DYVKVETEDQ VLATFCGRET BACU016537/1-756 VTWNITVPEG FRIKLYFMHF NLESSYLCEY DYVKVETEDQ VLATFCGRET 201 250 ENSP00000296280/1-728 TDTEQTPGQE VVLSPGSFMS ITFRSDFSNE ERFTGFDAHY MAVDVDECKE ENSTTRP00000008531/1-829 TDTEQTPGQE VVLSPGSFMS ITFRSDFSNE ERFTGFEAHY MAVDVDECME ENSBTAP00000016545/1-728 TDTEQTPGQE VVLSPGSFMS ITFRSDFSDE ERFTGFDAHY VAVDVDECTE bmy_04471T0/1-821 TDTEQXPGQE VVLSPGSFMS ITFRSDFSNE ERFTGFDAHY MAVDVDECTE BACU016537/1-756 TDTEQTPGQE VVLSPGSFMS ITFRSDFSNE ERFTGFDAHY MAVDVDECTE 251 300 ENSP00000296280/1-728 REDEELSCDH YCHNYIGGYY CSCRFGYILH TDNRTCRVEC SDNLFTQRTG ENSTTRP00000008531/1-829 QEDEELSCDH YCHNYIGGYY CSCRVGYILH TDNRTCRVEC SDNLFTQRTD ENSBTAP00000016545/1-728 REDEELSCDH YCHNYIGGYY CSCRFGYILH TDNRTCRVEC SDNLFTQRTG bmy_04471T0/1-821 REDEELSCDH YCHNYIGGYY CSCRFGYILH TDNRTCRVEC SDNLFTQRAG BACU016537/1-756 REDEELSCDH YCHNYIGGYY CSCRFGYILH TDNRTCRVEC SDNLFTQRTG 301 350 ENSP00000296280/1-728 VITSPDFPNP YPKSSECLYT IELEEGFMVN LQFEDIFDIE DHPEVPCPYD ENSTTRP00000008531/1-829 VITSPDFPSP YP-SSECVYT IELEEGFMI- LQ-EDIFDIE DH-EVSCPYD ENSBTAP00000016545/1-728 VITSPDFPSP YPKSSECLYT IELEEGFMIS LQFEDIFDIE DHPEVSCPYD bmy_04471T0/1-821 VITSPDFPSP YPKSSECLYT IELEEGFMIS LQFEDIFDIE DHPEVSCPYD BACU016537/1-756 EITSPDFPSP YPKSSECLYT IELEEGFMIS LQFEDIFDIE DHPEVSCPYD 351 400 ENSP00000296280/1-728 YIKIKVGPKV LGPFCGEKAP EPISTQSHSV LILFHSDNSG ENRGWRLSYR ENSTTRP00000008531/1-829 YIKIKTGPKV LGPFCGEKAP EPINTQSHSV QILFRSDNSG ENRGWRLLYR ENSBTAP00000016545/1-728 YIKIKAGPKV LGPFCGEKAP EPINTQSHSI QILFRSDNSG ENRGWRLSYR bmy_04471T0/1-821 YIKIKTGPKV LGPFCGEKAP EPINTQSHSV QILFRSDNSG ENRGWRLLYR BACU016537/1-756 YIKIKTGPKV LGPFCGEKAP EPINTQSHSV QILFRSDNSG ENRGWRLLYR 401 450 ENSP00000296280/1-728 AAGNECPELQ PPVHGKIEPS QAKYFFKDQV LVSCDTGYKV LKDNVEMDTF ENSTTRP00000008531/1-829 ATGNECPKLQ PPVHGNIEPL QAKYFFKDQV LISCDTGHKV LKDNVEMDTF ENSBTAP00000016545/1-728 ATGNECPKLQ PPVHGKIEPL QTTYSFKDQV LISCDTGYKV LKDNVEMDTF bmy_04471T0/1-821 ATGNECPKLQ PPVDGKIEPL QAKYFFKDQV LVSCDTGYKV LKDNVEMDTF BACU016537/1-756 ATGNECPKLQ PPVDGKIEPL QAKYFFKDQV LVSCDTGYQV LKDNVEMETF 451 500 ENSP00000296280/1-728 QIECLKDGTW SNKIPTCK-- ---------- ---------- ---------- ENSTTRP00000008531/1-829 QIECLKDGTW SNKIPTCK-- ---------- ---------- ---------- ENSBTAP00000016545/1-728 QMECLKDGTW SSKIPTCK-- ---------- ---------- ---------- bmy_04471T0/1-821 QIECLKDGTW SNKIPTCKSK KTPSVDYKDH ELPSTGGIRA EPTQGGNPGR BACU016537/1-756 QIECLKDGTW SNEIPTCK-- ---------- ---------- ---------- 501 550 ENSP00000296280/1-728 ---------- ---------- ---------- ---IVDCRAP GELEHGLITF ENSTTRP00000008531/1-829 ---------- ---------- ---------- ---IVDCGAP AELENGLVTF ENSBTAP00000016545/1-728 ---------- ---------- ---------- ---IADCGAP AELENGVVTF bmy_04471T0/1-821 KPQDCVNVSS GRQVKKDMSE GKQMAGRVTV ETGFVDCGAP AELENGLVTF BACU016537/1-756 ---------- ---------- ---------- ---IVDCGAP AELENGLVTF 551 600 ENSP00000296280/1-728 STRNNLTTYK SEIKYSCQEP YYKMLNNNTG IYTCSAQGVW MNKVLGRSLP ENSTTRP00000008531/1-829 STRNNLTTYK SEIRYSCQQP YYKMLHSITD VYTCSAQGVW MNEVLGRSQP ENSBTAP00000016545/1-728 STRNNLTTYK SEIRYSCQRP YYKMLHNTTG VYTCSAQGVW MNEVLGRSQP bmy_04471T0/1-821 STRNNLTTYK SEIRYSCQQP YYKMLHSITD VYTCSAQGVW MNEVLGRSQP BACU016537/1-756 STRNNLTTYK SEIRYSCQQP YYKMLHSITD VYTCSAQGVW MNEVLGRSQP 601 650 ENSP00000296280/1-728 TCLPECGQPS RSLPSLVKRI IGGRNAEPGL FPWQALIVVE DTSRVPNDKW ENSTTRP00000008531/1-829 TCLPACGQPS RSLPNLVKRI IGGRNAEPGL FPWQALIVVE DTSRVPNDKW ENSBTAP00000016545/1-728 TCLPVCGQPS RSLPNLVKRI IGGRNAEPGL FPWQALIVVE DTSRVPNDKW bmy_04471T0/1-821 TCLPVCGQPS RSLPNLVKRI IGGRNAEPGL FPWQALIVVE DTSRVPNDKW BACU016537/1-756 TCLPVCGQPS RSLPNLVKRI IGGRNAEPGL FPWQALIVVE DTSRVPNDKW 651 700 ENSP00000296280/1-728 FGSGALLSAS WILTAAHVLR SQRRDTTVIP VSKEHVTVYL GLHDVRDKSG ENSTTRP00000008531/1-829 FGSGALLSES WILTAAHVLR SQRRDNTVTP VSKEHVTVYL GLHDVRDKSG ENSBTAP00000016545/1-728 FGSGALLSES WILTAAHVLR SQRRDNTVTP VSKEHVTVHL GLHDVRDKSG bmy_04471T0/1-821 FGSGALLSES WILTAAHVLR SQRRDNTVTP VSKEHVTVYL GLHDVRDKSG BACU016537/1-756 FGSGALLSES WILTAAHVLR SQRRDNTVTP VSKEHVTVYL GLHDVRDKSE 701 750 ENSP00000296280/1-728 AVNSSAARVV LHPDFNIQNY NHDIALVQLQ EPVPLGPHVM PVCLPRLEPE ENSTTRP00000008531/1-829 AVNSSAARVV LHPDFDIQNY NHDIALVQLR EPVPLGPHIM PVCLPRPEPE ENSBTAP00000016545/1-728 AVNSSAARVV LHPDFNIQSY NHDIALVQLR EPVPLGPHIL PVCLPPPEPA bmy_04471T0/1-821 AVNSSAARVV LHPDFDIQNY NHDIALVQLR EPVPLGPHIM PVCLPQPEPE BACU016537/1-756 AVNSSAARVV LHPDFDIQNY NHDIALVQLR EPVPLGPHIM PVCLPRPEPE 751 800 ENSP00000296280/1-728 GPAPHMLGLV AGWGISNPNV TVDEIISSGT RTLSDVLQYV KLPVVPHAEC ENSTTRP00000008531/1-829 GPAPHMLGLV AGWGISNPNV TVDEIISSGT RTLSDVLQYV KLPVVPHAEC ENSBTAP00000016545/1-728 GPAPHVLGLV AGWGISNPNV TVDEIIGSGT RTLSDVLQYV KLPVVPHAEC bmy_04471T0/1-821 GPAPHMLGLV AGWGISNPNV TVDEIISSGT RTLSDVLQYV KLPVVPHAEC BACU016537/1-756 GPAPHMLGLV AGWGISNPNV TVDEIISSGT RTLSDVLQYV KLPVVPHAEC 801 850 ENSP00000296280/1-728 KTSYESRSGN YSVTENMFCA GYYEGGKDTC LGDSGGAFVI FDDLSQRWVV ENSTTRP00000008531/1-829 KTSYESRSGN YSVTENMFCA GYYEGGKDTC LGDSGGAFVI LDDSSQRWVA ENSBTAP00000016545/1-728 KTSYESRSGN YSVTENMFCA GYYEGGKDTC LGDSGGAFVI LDDASQRWVA bmy_04471T0/1-821 KTSYESRSGN YSVTENMFCA GYYEGGKDTC LGDSGGAFVV LDDSSQRWVA BACU016537/1-756 KTSYESRSGN YSVTENMFCA GYYEGGKDTC LGDSGGAFVV LDDSSQRWVA 851 900 ENSP00000296280/1-728 QGLVSWGGPE ECGSKQVYGV YTKVSNYVDW VWEQMGLPQS VVEPQVER ENSTTRP00000008531/1-829 QGLVSWGGPE ECGSKQVYGV YTKVSNYVDW VWEQIGSPQG LGELQVER ENSBTAP00000016545/1-728 QGLVSWGGPE ECGSKQVYGV YTKVSNYVDW VWEQMGSPQG LGELQVER bmy_04471T0/1-821 QGLVSWGGPE ECGSKQVYGV YTKVSNYVDW VWEQIGSPRG LGELQVER BACU016537/1-756 QGLVSWGGPE ECGSKQVYGV YTKVSNYVDW VWGQIGSPRG LGELQVER