KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 16:59:18 2014 Check: 00 .. Name: ENSP00000369257/1-1315 Len: 1374 Check: 6692 Weight: 1.00 Name: ENSTTRP00000012058/1-1255 Len: 1374 Check: 5150 Weight: 1.00 Name: ENSBTAP00000016585/1-1269 Len: 1374 Check: 4316 Weight: 1.00 Name: bmy_02344T0/1-1051 Len: 1374 Check: 3375 Weight: 1.00 Name: BACU001867/1-1001 Len: 1374 Check: 11 Weight: 1.00 // 1 50 ENSP00000369257/1-1315 ---------- ---------- ---------- ---------- --------MS ENSTTRP00000012058/1-1255 ---------- ---------- ---------- ---------- --------MS ENSBTAP00000016585/1-1269 ---------- ---------- ---------- ---------- --------MS bmy_02344T0/1-1051 MFFPSSSRPA APHAVGAIAT VASGGERVEL MLQLGKILFE FSFLHRYAMS BACU001867/1-1001 ---------- ---------- ---------- ---------- ---------- 51 100 ENSP00000369257/1-1315 GPTDETAGDL PVKDTGLNLF GMGGLQETST TRTMKSRQAV SRVSREELED ENSTTRP00000012058/1-1255 GPTDETAGDL PVKDTGLNLF GMGGLQXXXX XXXXXXXXXX XXXXXEELED ENSBTAP00000016585/1-1269 GPTDETAGDL PVKDIGLNLF GMGGLQETST TRTMKSRQAV SRISREELED bmy_02344T0/1-1051 GPTDETAGDL PVKDTGLNLF GMGGLQETST TRTMKSLQAV SRISREELED BACU001867/1-1001 ---------- ---------- ---------- ---------- ---------- 101 150 ENSP00000369257/1-1315 RFLRLHDENI LLKQHARKQE DKIKRMATKL IRLVNDKKRY ERVGGGPKRL ENSTTRP00000012058/1-1255 RFLRLHDENI LLKQHARKQE DKIKRMATKL IRLVNDKKRY EWVGGGPKRL ENSBTAP00000016585/1-1269 RFLRLHDENI LLKQHARKQE DKIKRMATKL IRLVNDKKRY EQVGGGPKRL bmy_02344T0/1-1051 RFLRLHDENI LLKQHARKQE DKIKRMATKL IRLVNDKKRY ERVGGGPKRL BACU001867/1-1001 ---------- ---------- ---------- ---------- ---------- 151 200 ENSP00000369257/1-1315 GRDVEMEEMI EQLQEKVHEL EKQNETLKNR LISAKQQLQT QGYRQTPYNN ENSTTRP00000012058/1-1255 GRDVEMEEMI ERLQEKVHEL ERQNEVLKNR LISTKQQLQI QGHRQTPYSY ENSBTAP00000016585/1-1269 GRDVEMEEMI ERLQEKVHEL ERQNEVLKSR LISTKQQLQI QGHRHTPYSY bmy_02344T0/1-1051 GRDVEMEEMI ERLQEKVHEL ERQNEVLKNR LISTKQQLQI QGHRQTPYSY BACU001867/1-1001 ---------- ---------- ---------- ---------- ---------- 201 250 ENSP00000369257/1-1315 VQSRINTGRR KANENAGLQE CPRKGIKFQD ADVAETPHPM FTKYGNSLLE ENSTTRP00000012058/1-1255 VQSRVNTGRR KANENAGLQE CPRKGIKFQD TDVAETLQPM PTKHGNILLE ENSBTAP00000016585/1-1269 VQSRVNTGRR RVNENAGLQE CPRKGIKFQD TDVAETVQTM PTKYSNSLLK bmy_02344T0/1-1051 VQSRVNTGRR KVNENAGLQE CPRKGIKFQD TDVAETLQPM PTKHGNSLLE BACU001867/1-1001 ---------- ---------- ---------- ---------- ---------- 251 300 ENSP00000369257/1-1315 EARGEIRNLE NVIQSQRGQI EELEHLAEIL KTQLRRKENE IELSLLQLRE ENSTTRP00000012058/1-1255 EARGEIRNXX XXXXXXXXXX EELEHLAEIL KTQLRKENEE S--SHHQLRD ENSBTAP00000016585/1-1269 EARGEIRNLE NVIESQRGQI EELERLAEIL KTQLRRKENE IELSLLQLRE bmy_02344T0/1-1051 EARGEIRNLE NVIQSQRGQI EELEHLAEIL KTQLRRKENE IELSLLQLRE BACU001867/1-1001 ---------- ---------- ---------- ---------- ---------- 301 350 ENSP00000369257/1-1315 QQATDQRSNI RDNVEMIKLH KQLVEKSNAL SAMEGKFIQL QEKQRTLRIS ENSTTRP00000012058/1-1255 QQATDQRSNI RDNVEMIKLH KQLVEKSNAL SVMEGKFIQL QEMQKTLRIS ENSBTAP00000016585/1-1269 HQATDQRSNI RDNVELIKLH KQLVEKSNAL SVMEGKFIQL QEKQKTLRIS bmy_02344T0/1-1051 QQATDQRSNI RDNVEMIKLH KQLVEKSNAL SVMEGKFIQL QEKQKTLRIS BACU001867/1-1001 ---------- -----MIKLH KQLVEKSNAL SVMEGKFIQL QEKQKTLRIS 351 400 ENSP00000369257/1-1315 HDALMANGDE LNMQLKEQRL KCCSLEKQLH SMKFSERRIE ELQDRINDLE ENSTTRP00000012058/1-1255 HDALMANGDE LNMQLKEQRL KCCTLEKQL- ---------- -LQDRINDLE ENSBTAP00000016585/1-1269 HDALMANGDE LNLQLKEQRL KCCSLEKQLR SMTFSERRIE ELQDRISDLE bmy_02344T0/1-1051 HDALMANGDQ LNMQLKEQRL KCCSLEKQLR SMTFSERRIE ELQDRINDLE BACU001867/1-1001 HDALMANGDQ LNMQLKEQRL KCCSLEKQLR SMTFSERRIE ELQDRINDLE 401 450 ENSP00000369257/1-1315 KERELLKENY DKLYDSAFSA AHEEQWKLKE QQLKVQIAQL ETALKSDLTD ENSTTRP00000012058/1-1255 KERELLKENY DKLYNSAFSA AHEEQWKLKE QQLKVQIAQL ETALKSDLTD ENSBTAP00000016585/1-1269 KERELLKENY DKLYNSAFSA AHEEQWKLKE QQLKIQIAQL ETALKSDLTD bmy_02344T0/1-1051 KERELLKENY DKLYNSAFSA AHEEQWKLKE QQLKVQIAQL ETALKSDLAD BACU001867/1-1001 KERELLKENY DKLYNSAFSA AHEEQWKLKE QQLKVQIAQL ETALKSDLAD 451 500 ENSP00000369257/1-1315 KTEILDRLKT ERDQNEKLVQ ENRELQLQYL EQKQQLDELK KRIKLYNQEN ENSTTRP00000012058/1-1255 KTEILDRLKT ERDQNEKIIQ ENRELQLQYL EQKQQLDELK NCMKFYNQES ENSBTAP00000016585/1-1269 KTEILDRLKT ERDQNEKISQ ENRQLQLQYL EQKQQLDELK NRMKFYNQES bmy_02344T0/1-1051 KTEILDRLKT ERDQNEKIIQ ENRELQLQYL EQKQQLDELK NRMKFYNQES BACU001867/1-1001 KTEILDRLKT ERDQNEKIIQ ENRELQLQYL EQKQQLDELK NRMKFYNQES 501 550 ENSP00000369257/1-1315 DINADELSEA LLLIKAQKEQ KNGDLSFLVK VDSEINKDLE RSMRELQATH ENSTTRP00000012058/1-1255 DINADELSEA LLLIKAQKSQ KNGDLSFLEK VDSKINKDLE RSMKELQATH ENSBTAP00000016585/1-1269 DINADELSEA LLLIKAQKSQ KNGDLSFLEK VDSKINKDLE RSMKELQATH bmy_02344T0/1-1051 DINADELSEA LLLIKAQKSQ KNGDLSFLEK VDSKINKDLE RSMKELQATH BACU001867/1-1001 DINADELSEA LLLIKAQKSQ KNGDLSFLEK VDSKINKDLE RSMKELQATH 551 600 ENSP00000369257/1-1315 AETVQELEKT RNMLIMQHKI NKDYQMEVEA VTRKMENLQQ DYELKVEQYV ENSTTRP00000012058/1-1255 AETVQELEKT RNMLIMQHKI NKDYQMEVEV VTQKMENLQQ DYELRVEQYV ENSBTAP00000016585/1-1269 AETVQELEKT RNMLIMQHKI NKDYQMEVEA VTQKMENLQQ DYELKVEQYV bmy_02344T0/1-1051 AETVQELEKT RNMLIMQHKI NKDYQMEVEA VTQKMENLQQ DYELRVEQYV BACU001867/1-1001 AETVQELEKT RNMLIMQHKI NKDYQMEVEA VTQKMENLQQ DYELRVEQYV 601 650 ENSP00000369257/1-1315 HLLDIRAARI HKLEAQLKDI AYGTKQYKFK PEIMPDDSVD EFDETIHLER ENSTTRP00000012058/1-1255 HLLDIRAARI QKLEAQLKDI AYGTKQYKFK PEITPDDSVD EFDETIQLER ENSBTAP00000016585/1-1269 HLLDIRAARI QKLEAQLKDI AYGTKQYKFK PEIMPDDSVD EFDETIHLER bmy_02344T0/1-1051 HLLDIRAARI QKLEAQLKDI AYGTKQYKFK PEIMPDDSVD EFDETIHLER BACU001867/1-1001 HLLDIRAARI QKLEAQLKDI AYGTKQYKFK PEIMPDDSVD EFDETIHLER 651 700 ENSP00000369257/1-1315 GENLFEIHIN KVTFSSEVLQ ASGDKEPVTF CTYAFYDFEL QTTPVVRGLH ENSTTRP00000012058/1-1255 GENLFEIHIN KVTFSSEVLQ ASGDKEPVTF CTFAFYDFEL QTTPIVRGLH ENSBTAP00000016585/1-1269 GENLFEIHIN KVTFSSEVLQ ASGDKEPVTF CTYAFYDFEL QTTPIVRGLH bmy_02344T0/1-1051 GENLFEIHIN KVTFSPEVLQ ASGDKEPVTF CTYAFYDFEL QTTPIVRGLH BACU001867/1-1001 GENLFEIHIN KVTFPSEVLQ ASGDKEPVTF CTYAFYDFEL QTTPIVRGLH 701 750 ENSP00000369257/1-1315 PEYNFTSQYL VHVNDLFLQY IQKNTITLEV HQAYSTEYET IAACQLKFHE ENSTTRP00000012058/1-1255 PEYNFTSQYL VHVNDLFLQY IQKNTITLEV HQAYSTDYET IAACQLRFHE ENSBTAP00000016585/1-1269 PEYNFTSQYL VHVNDLFLQY IQKNTVTLEV HQAYSTDYET IAACQLRFHE bmy_02344T0/1-1051 PEYNFTSQYL VHVNDLFLQY IQKNTITLEV HQAYSTDYET IAACQLRFHE BACU001867/1-1001 PEYNFTSQYL IHVNDLFLQY IQKNTITLEV HQAYSTDYET IAACQLRFHE 751 800 ENSP00000369257/1-1315 ILEKSGRIFC TASLIGTKGD IPNFGTVEYW FRLRVPMDQA IRLYRERAKA ENSTTRP00000012058/1-1255 ILEKSGRIFC TASLVGTKGD IPNFGTVEYW FRLRVPMDQA IRLYRERAKA ENSBTAP00000016585/1-1269 ILEKSGRIFC TASLVGTKGD ISNFGTVEYW FRLRVPMDQA IRLYRERAKA bmy_02344T0/1-1051 ILEKSGRIFC TASLVGTKGD IPNFGTVEYW FRLRVPMDQA IRLYRERAKA BACU001867/1-1001 ILEKSGRIFC TASLVGTKGD IPNFGTVEYW FRLRVPMDQA IRLYRERAKA 801 850 ENSP00000369257/1-1315 LGYITSNFKG PEHMQSLSQQ APKTAQLSST DSTDGNLNEL HITIRCCNHL ENSTTRP00000012058/1-1255 LGYITSNFKG PEQMQWLSQQ APKTAQLGST DSTDGNLNEL HVTVRCCSRL ENSBTAP00000016585/1-1269 LGYITSNFKG PEQMQWLSHQ APKTAQLSST DSTDGNLNEL HITIRCCNHL bmy_02344T0/1-1051 LGYITSNFKG PEQMQWLSQQ APKTAQLGST DSTDGNLNEL HVTVRCCSRL BACU001867/1-1001 LGYITSNFKG PEQMQWLSQQ APKTAQLGST DSTDGNLNEL HVTVRCCSHL 851 900 ENSP00000369257/1-1315 QSRASHLQPH PYVVYKFFDF ADHDTAIIPS SNDPQFDDHM YFPVPMNMDL ENSTTRP00000012058/1-1255 QSRAGHLQPH PYVVYKFSDF ADHDTAIIPC SSDPQFDDHM CFPVPMNMDL ENSBTAP00000016585/1-1269 QSRASHLQPH PYVVYKFFDF ADHDTAIIPS SNDPQFDDHM CFPVPMNMDL bmy_02344T0/1-1051 QSRASHLQPH PYVVYKFSDF ADHDTAIIPS SSDPQFDDHM CFPVPMNMDL BACU001867/1-1001 RSRASHLQPH PYVVYKFSDF ADHDTAIIPS SSDPQFDDHM CFPVPMNMDL 901 950 ENSP00000369257/1-1315 DRYLKSESLS FYVFDDSDTQ ENIYIGKVNV PLISLAHDRC ISGIFELTDH ENSTTRP00000012058/1-1255 DRYLKSESLS FYVFDDSDTQ EDIYIGKVNV PLISLAHDRC ISGIFELTDH ENSBTAP00000016585/1-1269 DRYLKSESLS FYVFDDSDTQ ENIYIGKVSV PLISLAHDRC ISGIFELTDH bmy_02344T0/1-1051 DRYLKSESLS FYVFDDSDTQ EDIYIGKVNV PLISLAHDRC ISGIFELTDH BACU001867/1-1001 DQYLKSESLS FYVFDDSDTQ EDIYIGKVNV PLISLAHDRC ISGIFELTDH 951 1000 ENSP00000369257/1-1315 QKHPAGTIHV ILKWKFAYLP PSGSITTEDL GNFIRSEEPE VVQRLPPASS ENSTTRP00000012058/1-1255 KKQPAGSIHV ILKWKFAYLP PSGSITTEDL GNFIHKEESE VVQRLPPASS ENSBTAP00000016585/1-1269 EKHPAGTIHV ILKWKFAYLP PSGCITTEDL GNFRHKEESE VVQRLLPTSS bmy_02344T0/1-1051 KKHPAGSIHV ILKWKFAYLP PSGSITTEDL GNFIHKEESE VVQRLPPTSS BACU001867/1-1001 KKHPAGSIHV ILKWKFAYLP PSGSITTEDL GNFIHKEESE VVQRLPPTSS 1001 1050 ENSP00000369257/1-1315 VSTLVL---- ------APRP KPRQRLTPVD KKVSFVDIMP HQSDETSPPP ENSTTRP00000012058/1-1255 VSTLVV---- ------APTP KPR-RLTPKD KKVSFVDITP LQRSETCTSP ENSBTAP00000016585/1-1269 FSTIIA---- ------APTP KPR-RLTTKD KKVSFMDITP HQHYETSTLP bmy_02344T0/1-1051 VSTLVVSNSD FEFPIKAPTP KPR-RLTPKD KKVSFVDITP HQRS------ BACU001867/1-1001 VSTLV----- ------APTP KPR-RLTPKD KKVSFVDITP HQRSETCTPP 1051 1100 ENSP00000369257/1-1315 EDRKEISPEV EHIPEIEINM LTVPHVPKVS QEGSVDEVKE NTEKMQQGK- ENSTTRP00000012058/1-1255 EDMKEISPEV EHTPEIEINM PTVSHIPEVS QESSVDKVKE NTEKVQQGRD ENSBTAP00000016585/1-1269 EDRKEISPEV EHIPEREIDM PTVSHIPKVP QESSVDKVKE NTEKTQQGKD bmy_02344T0/1-1051 ---------- ---------- ---------- ---------- ---------- BACU001867/1-1001 EDTKEISPEV EHTPEIEINM PTVSHIPEVS QESSVDKVKE NTEKVQQGKD 1101 1150 ENSP00000369257/1-1315 DDVSLLSEGQ LAEQSLASSE DETEITEDLE PEVEEDMSAS DSDDCIIPGP ENSTTRP00000012058/1-1255 DDVSLLSEGQ LAERTLTSSE DETEITEELE PEDEEDRSAS DSDECIIPGP ENSBTAP00000016585/1-1269 DDVSLLSEGQ LAERSLTSSE DETEITEELE PEDEGDRSAS DSDECIIPGP bmy_02344T0/1-1051 ---------- ---------- ---------- ---------- ---------- BACU001867/1-1001 DDVSLLSEGQ LAERTLTSSE DETEITEELE PEDEEDRSAS DSDECIIPGP 1151 1200 ENSP00000369257/1-1315 ISKNIKQSLA LSPGLGCSSA ISAHCNFRLP GSSDFPASAS QVDGITGACH ENSTTRP00000012058/1-1255 TAETIK---- ---------- ---------- ---------- ---------- ENSBTAP00000016585/1-1269 VSKNIK---- ---------- ---------- ---------- ---------- bmy_02344T0/1-1051 ---------- ---------- ---------- ---------- ---------- BACU001867/1-1001 IAKSIK---- ---------- ---------- ---------- ---------- 1201 1250 ENSP00000369257/1-1315 HTQPSEKIRI EIIALSLNDS QVTMDDTIQR LFVECRFYSL PAEETPVSLP ENSTTRP00000012058/1-1255 --QPSEKIRI EIIALSLNDS PVTADDTIQR LFIECRFYSL PAEXXXXXXX ENSBTAP00000016585/1-1269 --QPPEKIRI EIIALSLNDS RVTADDTIQR LFVECRFYSL PAEETPVSLP bmy_02344T0/1-1051 ---------- ---------- ---------- ---------- ---------- BACU001867/1-1001 --QPSEKIRI EIIALSLNDS PVTADDTIQR LFIECRFYSL LAEETPVSLP 1251 1300 ENSP00000369257/1-1315 KPKSGQWVYY NYSNVIYVDK ENNKAKRDIL KAILQKQEMP NRSLRFTVVS ENSTTRP00000012058/1-1255 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXVRFTVVS ENSBTAP00000016585/1-1269 KPKSGQWVYY NYSYVIYMDK ENNQAKRDIL KAILLKQEMP NRSVRFTVVS bmy_02344T0/1-1051 ---------- ---------- ---------- ---------- ---------- BACU001867/1-1001 KPRSGQWVYY NYSNVIYVDK ENNQAKRDIL KAILLKQEMP NRSVRFTVVS 1301 1350 ENSP00000369257/1-1315 DPPEDEQDLE CEDIGVAHVD LADMFQEGRD LIEQNIDVFD ARADGEGIGK ENSTTRP00000012058/1-1255 DPPEDEQDLE CEDIGIANVD LADMFREGRD IIEQSIDVLD ARADGGGIGK ENSBTAP00000016585/1-1269 DPPEDEQDLE CEDIGIANVD LADVFREGRD IIEQNIDVLD ARASGGGIGK bmy_02344T0/1-1051 ---------- ---------- ---------- ---------- ---------- BACU001867/1-1001 DPPEDEQDLE CEDVGIANVD LADMFREGRD IIEQSIDVLD ARADGGGIGK 1351 1400 ENSP00000369257/1-1315 LRVTVEALHA LQSVYKQYRD DLEA ENSTTRP00000012058/1-1255 LRVTVEALHA LRSVYEQYRD DLEA ENSBTAP00000016585/1-1269 LRVTVEALHA LRSVYEQFRD DLEA bmy_02344T0/1-1051 ---------- VSSKHSKY-- ---- BACU001867/1-1001 LRVTVEALHA LRSVYEQYRD DLEA