KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 4 Type: P Thu May 15 16:59:20 2014 Check: 00 .. Name: ENSP00000469863/1-629 Len: 733 Check: 8008 Weight: 1.00 Name: ENSBTAP00000016607/1-629 Len: 733 Check: 7703 Weight: 1.00 Name: bmy_11268T0/1-733 Len: 733 Check: 8991 Weight: 1.00 Name: BACU008300/1-454 Len: 733 Check: 8762 Weight: 1.00 // 1 50 ENSP00000469863/1-629 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000016607/1-629 ---------- ---------- ---------- ---------- ---------- bmy_11268T0/1-733 ALGGAVAAAV VTHRAACPAC PPRRGACRAG RAGTGGRLLT TDTAAMLAAR BACU008300/1-454 ---------- ---------- ---------- ---------- ---------- 51 100 ENSP00000469863/1-629 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000016607/1-629 ---------- ---------- ---------- ---------- ---------- bmy_11268T0/1-733 PPHWGPHRAP APRGRASPDP GLSGGGSRGA GCEKAPPGRA PAPGLTPLRP BACU008300/1-454 ---------- ---------- ---------- ---------- ---------- 101 150 ENSP00000469863/1-629 ----MAVPPG HGPFSGFPGP QEHTQVLPDV RLLPRRLPLA FRDATSAPLR ENSBTAP00000016607/1-629 ----MAVPPG HGPFSGFPGP QEHTQVLPEV RLLPRRLPLA FRDATSAPLR bmy_11268T0/1-733 SEPTMAVPPG HGPFSGFPGP QEHTQVLPDG RLLPRRLPLA FRDATSAPLR BACU008300/1-454 ----MAVPPG HGPFSGFPGP QEHTQVLPDG RLLPRRLPLA FRDATSAPLR 151 200 ENSP00000469863/1-629 KLSVDLIKTY KHINEVYYAK KKRRAQQAPP QDSSNKKEKK VLNHGYDDDN ENSBTAP00000016607/1-629 KLSVDLIKTY KHINEVYYAK KKRRAQQAPP QDSSTKKEKK VLNHGYDDDN bmy_11268T0/1-733 KLSVDLIKTY KHINEVYYAK KKRRAQQVPP QDSSTKKEKK VLNHGYDDDN BACU008300/1-454 KLSVDLIKTY KHINEVYYAK KKRRAQQVPP QDSSTKKEKK VLNHGYDDDN 201 250 ENSP00000469863/1-629 HDYIVRSGER WLERYEIDSL IGKGSFGQVV KAYDHQTQEL VAIKIIKNKK ENSBTAP00000016607/1-629 HDYIVRSGER WLERYEIDSL IGKGSFGQVV KAYDHQTQEL VAIKIIKNKK bmy_11268T0/1-733 HDYIVRSGER WLERYEIDSL IGKGSFGQVV KAYDHQTQEL VAIKIIKNKK BACU008300/1-454 HDYIVRSGER WLERYEIDSL IGKGSFGQVV KAYDHQTQEL VAIKIIKNKK 251 300 ENSP00000469863/1-629 AFLNQAQIEL RLLELMNQHD TEMKYYIVHL KRHFMFRNHL CLVFELLSYN ENSBTAP00000016607/1-629 AFLNQAQIEL RLLELMNQHD TEMKYYIVHL KRHFMFRNHL CLVFELLSYN bmy_11268T0/1-733 AFLNQAQIEL RLLELMNQHD TEMKYYIVHL KRHFMFRNHL CLVFELLSYN BACU008300/1-454 AFLNQAQIEL RLLELMNQHD TEMKYYIVHL KRHFMFRNHL CLVFELLSYN 301 350 ENSP00000469863/1-629 LYDLLRNTHF RGVSLNLTRK LAQQLCTALL FLATPELSII HCDLKPENIL ENSBTAP00000016607/1-629 LYDLLRNTHF RGVSLNLTRK LAQQLCTALL FLATPELSII HCDLKPENIL bmy_11268T0/1-733 LYDLLRNTHF RGVSLNLTRK LAQQLCTALL FLATPELSII HCDLKPENIL BACU008300/1-454 LYDLLRNTHF RGVSLNLTRK LAQQLCTALL FLATPELSII HCDLKPENIL 351 400 ENSP00000469863/1-629 LCNPKRSAIK IVDFGSSCQL GQRIYQYIQS RFYRSPEVLL GTPYDLAIDM ENSBTAP00000016607/1-629 LCNPKRSAIK IVDFGSSCQL GQRIYQYIQS RFYRSPEVLL GTPYDLAIDM bmy_11268T0/1-733 LCNPKRSAIK IVDFGSSCQL GQRIYQYIQS RFYRSPEVLL GTPYDLAIDM BACU008300/1-454 LCNPKRSAIK IVDFGSSCQL GQRIYQYIQS RFYRSPEVLL GTPYDLAIDM 401 450 ENSP00000469863/1-629 WSLGCILVEM HTGEPLFSGS NEVDQMNRIV EVLGIPPAAM LDQAPKARKY ENSBTAP00000016607/1-629 WSLGCILVEM HTGEPLFSGS NEVDQMNRIV EVLGIPPAPM LDQAPKARKY bmy_11268T0/1-733 WSLGCILVEM HTGEPLFSGS NEVDQMNRIV EVLGIPPAPM LDQAPKARKY BACU008300/1-454 WSLGCILVEM HTGEPLFSGS NEVDQMNRIV EVLGIPPAPM LDQAPKARKY 451 500 ENSP00000469863/1-629 FERLPGGGWT LRRTKELRKD YQGPGTRRLQ EVLGVQTGGP GGRRAGEPGH ENSBTAP00000016607/1-629 FERLPGGGWT LRRTKELRKD YQGPGTRRLQ EVLGVQTGGP GGRRAGEPGH bmy_11268T0/1-733 FERLPGGGWT LRRTKELRKD YQGPGTRRLQ EVLGVQTGGP GGRRAGEPGH BACU008300/1-454 FERLPGGGWT LRRTKELRKD YQGPGTRRLQ E--------- ---------- 501 550 ENSP00000469863/1-629 SPADYLRFQD LVLRMLEYEP AARISPLGAL QHGFFRRTAD EATNTGPAGS ENSBTAP00000016607/1-629 SPADYLRFQD LVLRMLEYEP AARISPLGAL QHGFFRRTAD EATNTGPAGS bmy_11268T0/1-733 SPADYLRFQD LVLRMLEYEP AARISPLGAL QHGFFRRTAD EATNTGPAGS BACU008300/1-454 ---------D LVLRMLEYEP AARISPLGAL QHGFFRRTAD EATNTGPAGS 551 600 ENSP00000469863/1-629 SASTSPAPLD TCPSSSTASS ISSSGGSSGS SSDNRTYRYS NRYCGGPGPP ENSBTAP00000016607/1-629 SASTSPAPLD TCPSSSTASS ISSSGGSSGS SSDNRTYRYS NRYCGGPGPP bmy_11268T0/1-733 SASTSPAPLD TCPSSSTASS ISSSGGSSGS SSDNRTYRYS NRYCGGPGPP BACU008300/1-454 SASTSPAPLD TCPSSSTASS ISSSGG---- ---------- ---------- 601 650 ENSP00000469863/1-629 ITDCEMNSPQ VPPSQPLRPW AGGDVPHKTH QAPASASSLP GTGAQLPPQP ENSBTAP00000016607/1-629 ITDCEMNSPQ VPPSQPLRPW AGGDVPHKTH QAPASASSLP GAGAQLPAQP bmy_11268T0/1-733 ITDCEMNSPQ VPPSQPLRPW AGGDVPHKTH QAPASASSLP GAGAQLPPQP BACU008300/1-454 ---------- ---------- ---------- ---------- ---------- 651 700 ENSP00000469863/1-629 RYLGRPPSPT SPPPPELMDV SLVGGPADCS PPHPAPAPQH PAASALRTRM ENSBTAP00000016607/1-629 RCLGRPPSPT SPPPPELMDV SLVGGPPDCS PPHPAPAPQH PAASALRTRM bmy_11268T0/1-733 RCLGRPPSPT SPPPPELMDV SLVGGPPDCS QPHPAPAPQH PAASALRTRM BACU008300/1-454 ---------- ---------- --------CS VPD------- ---------- 701 750 ENSP00000469863/1-629 TGGRPPLPPP DDPATLGPHL GLRGVPQSTA ASS ENSBTAP00000016607/1-629 TGGRPPLPPP DDPATLGPRL GLRGVPQSTA ASS bmy_11268T0/1-733 TGGRPPLPPP DDPATLGPHL GLCGIPQSTA ASS BACU008300/1-454 ---------- ---------- ---GVEQG-- ---