KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 16:59:21 2014 Check: 00 .. Name: ENSP00000443631/1-1234 Len: 1301 Check: 210 Weight: 1.00 Name: ENSBTAP00000016609/1-1234 Len: 1301 Check: 2154 Weight: 1.00 Name: ENSTTRP00000009751/1-1230 Len: 1301 Check: 9441 Weight: 1.00 Name: bmy_10870T0/1-1216 Len: 1301 Check: 2730 Weight: 1.00 Name: BACU005335/1-1251 Len: 1301 Check: 7007 Weight: 1.00 // 1 50 ENSP00000443631/1-1234 MAGAQPGVHA LQLEPPTVVE TLRRGSKFIK WDEETSSRNL VTLRVDPNGF ENSBTAP00000016609/1-1234 MAGARPGVHA LQLEPPTVVE TLRRGSKFIK WDEEASSRNL VTLRVDSNGF ENSTTRP00000009751/1-1230 MAGARPGVHA LQLEPPTVVE TLRRGSKFIK WDEEASSRNL VTLRVDPSGF bmy_10870T0/1-1216 MAGARPGVHA LQLEPPTVVE TLRRGSKFIK WDEEASSQNL VTLRVDPSGF BACU005335/1-1251 MAGARPGVHA LQLEPPTVVE TLRRGSKFIK WDEEASSQNL VTLRVDPSGF 51 100 ENSP00000443631/1-1234 FLYWTGPNME VDTLDISSIR DTRTGRYARL PKDPKIREVL GFGGPDARLE ENSBTAP00000016609/1-1234 FLYWTGPNME VDTLDISSIR DTRTGRYARL PKDPKIREVL GFGGPDARLE ENSTTRP00000009751/1-1230 FLYWTGPNME VDTLDISSIR DTRTGRYARL PKDPKIREVL GFGGPDARLE bmy_10870T0/1-1216 FLYWTGPNME VDTLDISSIR DTRTGRYARL PKDPKIREVL GFGGPDARLE BACU005335/1-1251 FLYWTGPNME VDTLDISSIR DTRTGRYARL PKDPKIREVL GFGGPDARLE 101 150 ENSP00000443631/1-1234 EKLMTVVSGP DPVNTVFLNF MAVQDDTAKV WSEELFKLAM NILAQNASRN ENSBTAP00000016609/1-1234 EKLMTVVAGP DPVNTTFLNF MAVQDDTAKV WSEELFKLAM NILAQNASRN ENSTTRP00000009751/1-1230 EKLITVVAGP DPVNTSFLNF MAVQDDTAKV WSEELFKLAM NILAQNASRN bmy_10870T0/1-1216 EKLITVVAGP DPVNTSFLNF MAVQDDTAKV WSEELFKLAM NILAQNASRN BACU005335/1-1251 EKLITVVAGP DPVNTSFLNF MAVQDDTAKV WSEELFKLAM NILAQNASRN 151 200 ENSP00000443631/1-1234 TFLRKAYTKL KLQVNQDGRI PVKNILKMFS ADKKRVETAL ESCGLKFNRS ENSBTAP00000016609/1-1234 TFLRKAYTKL KLQVNQDGRI PVKNILKMFS ADKKRVETAL ESCGLNFNRS ENSTTRP00000009751/1-1230 TFLRKAYTKL KLQVNQDGRI PVKNILKMFS ADKKRVETAL ESCGL-FNXS bmy_10870T0/1-1216 TFLRKAYTKL KLQVNQDGRI PVKNILKMFS ADKKRVETAL ESCGLNFNRS BACU005335/1-1251 TFLRKAYTKL KLQVNQDGRI PVKNILKMFS ADKKRVETAL ESCGLNFNRS 201 250 ENSP00000443631/1-1234 ESIRPDEFSL EIFERFLNKL CLRPDIDKIL LEIGAKGKPY LTLEQLMDFI ENSBTAP00000016609/1-1234 ESIRPDEFSL EIFERFLNKL CLRPDIDKIL LEIGAKGKPY LTLEQLMDFI ENSTTRP00000009751/1-1230 ESIRPDEFSL EIFER-VNKL CLRPDIDKIL LEIGAKGKPY LTLEQLMDFI bmy_10870T0/1-1216 ESIRPDEFSL EIFERFLNKL CLRPDIDKIL LEIGAKGKPY LTLEQLMDFI BACU005335/1-1251 ESIRPDEFSL EIFERFLNKL CLRPDIDKIL LEIGAKGKPY LTLEQLMDFI 251 300 ENSP00000443631/1-1234 NQKQRDPRLN EVLYPPLRPS QARLLIEKYE PNQQFLERDQ MSMEGFSRYL ENSBTAP00000016609/1-1234 NQKQRDPRLN EVLYPPLRPS QARLLIEKYE PNKQFLERDQ MSMEGFSRYL ENSTTRP00000009751/1-1230 NQKQRDPRLN EVLYPPLRPS QARLLIEKYE PNQQFLERDQ MSMEGFSRYL bmy_10870T0/1-1216 NQKQRDPRLN EVLYPPLRPS QARLLIEKYE PNQQFLERDQ MSMEGFSRYL BACU005335/1-1251 NQKQRDPRLN EVLYPPLRPS QARLLIEKYE PNQQFLERDQ MSMEGFSRYL 301 350 ENSP00000443631/1-1234 GGEENGILPL EALDLSTDMT QPLSAYFINS SHNTYLT--- -AGQLAGTSS ENSBTAP00000016609/1-1234 GGEENGILPL EALDLSTDMT QPLSAYFINS SHNTYLT--- -AGQLAGTSS ENSTTRP00000009751/1-1230 GGEENGILPL VXXXXXXXXX XXXXXXXXXX XXXXXXX--- XXGQLAGTSS bmy_10870T0/1-1216 GGEENGILPL EALDLSADMT QPLSAYFINS SHNTYLT--- -AGQLAGTSS BACU005335/1-1251 GGEENGILPL EALDLSTDMT QPLSAYFINS SHNTYLTASP PAGQLAGTSS 351 400 ENSP00000443631/1-1234 VEMYRQALLW GCRCVELDVW KGRPPEEEPF ITHGFTMTTE VPLRDVLEAI ENSBTAP00000016609/1-1234 VEMYRQALLW GCRCVELDVW KGRPPEEEPF ITHGFTMTTE VPLRDVLEAI ENSTTRP00000009751/1-1230 VEMYRQALLW GCRCVELDVW KGRPPEEEPF ITHGFTMTTE VPLRDVLEAI bmy_10870T0/1-1216 VEMYRQALLW GCRCVELDVW KGRPPEEEPF ITHGFTMTTE VPLRDVLEAI BACU005335/1-1251 VEMYRQALLW GCRCVELDVW KGRPPEEEPF ITHGFTMTTE VPLRDVLEAI 401 450 ENSP00000443631/1-1234 AETAFKTSPY PVILSFENHV DSAKQQAKMA EYCRSIFGDA LLIEPLDKYP ENSBTAP00000016609/1-1234 AETAFKTSPY PVILSFENHV DSAKQQAKMA EYCRSIFGDA LLIDPLDKYP ENSTTRP00000009751/1-1230 AETAFKTSPY PVILSFENHV DSAKQQAKMA EYCRSIFGDA LLIDPLDKYP bmy_10870T0/1-1216 AETAFKTSPY PVILSFENHV DSAKQQAKMA EYCRSIFGDA LLIEPLDKYP BACU005335/1-1251 AETAFKTSPY PVILSFENHV DSAKQQAKMA EYCRSIFGDA LLIDPLDKYP 451 500 ENSP00000443631/1-1234 LAPGVPLPSP QDLMGRILVK NKKRHRPSAG GPD--SAGRK RPLEQSNSAL ENSBTAP00000016609/1-1234 LAPGVPLPSP QDLMGRILVK NKKRHRLGSG VPD--SSVRK RPLEQSNSAL ENSTTRP00000009751/1-1230 LAPGVPLPSP EDLMGRILVK NKKRHRPSTG VPD--SSVRK RPLEQSNSAL bmy_10870T0/1-1216 LAPGVPLPSP QDLMGRILVK NKKRHRPSTG VPDSSSSVRK RPLEQSNSAL BACU005335/1-1251 LAPGVPLPSP QDLMGRILVK NKKRHRPSTG VPD--SSVRK RPLEQSNSAL 501 550 ENSP00000443631/1-1234 SESSAATEPS SPQLGSPSSD SCPGLSNGEE VGLEKPSLEP QKSLGDEGLN ENSBTAP00000016609/1-1234 SESSATTEPS SPQLGSPSSD SCPGLSNGEE VGLEKPSLEP RKSLGEEGLQ ENSTTRP00000009751/1-1230 SESSAATEPS SPQLGSPSSD SCPGLSNGEE AGLEKPSLEP QKSLGEESLQ bmy_10870T0/1-1216 SESSAATEPS SPQLGSPSSD SCPGLSNGEE AGLEKPSLEP QKSLGEESLQ BACU005335/1-1251 SESSAATEPS SPQLGSPSSD SCPGLSNGEE AGLEKPSLEP QKSLGEESLQ 551 600 ENSP00000443631/1-1234 RGPYVLGPAD REDEEEDEEE EEQTDPKKPT TDEGTASSEV NATEEMSTLV ENSBTAP00000016609/1-1234 RGPDVLGPAY REDEEEDEEE EEQTDPKKPT TDEGTASSEV NATEEMSTLV ENSTTRP00000009751/1-1230 RGPDALGSAY REDEEEDEEE EEQTDPKKPT TDEGTASSEV NATEEMSTLV bmy_10870T0/1-1216 RGPDALGSAY ---------- ---------- ---------- ---------- BACU005335/1-1251 RGPDALGSAY REDEEEDEEE EEQTDPKKPT TDEGTASSEV NATEEMSTLV 601 650 ENSP00000443631/1-1234 NYIEPVKFKS FEAAR-KRNK CFEMSSFVET KAMEQLTKSP MEFVEYNKQQ ENSBTAP00000016609/1-1234 NYIEPVKFKS FEAAR-KRNK CFEMSSFVET KAMEQLTKSP MEFVEYNKQQ ENSTTRP00000009751/1-1230 NYIEPVKFKS FEAARXXRNK CFEMSSFVET KAMEQLTKSP MEFVEYNKQQ bmy_10870T0/1-1216 ---------- ------QRNK CFEMSSFVET KAMEQLTKSP MEFVEYNKQQ BACU005335/1-1251 NYIEPVKFKS FEAAR-KRNK CFEMSSFVET KAMEQLTKSP MEFVEYNKQQ 651 700 ENSP00000443631/1-1234 LSRIYPKGTR VDSSNYMPQL FWNVGCQLVA LNFQTLDVAM QLNAGVFEYN ENSBTAP00000016609/1-1234 LSRIYPKGTR VDSSNYMPQL FWNVGCQLVA LNFQTLDVPM QLNAGVFEYN ENSTTRP00000009751/1-1230 LSRIYPKGTR VDSSNYMPQL FWNVGCQLVA LNFQTLDVAM QLNAGVFEYN bmy_10870T0/1-1216 LSRIYPKGTR VDSSNYMPQL FWNVGCQLVA LNFQTLDVAM QLNAGVFEYN BACU005335/1-1251 LSRIYPKGTR VDSSNYMPQL FWNVGCQLVA LNFQTLDVAM QLNVGVFEYN 701 750 ENSP00000443631/1-1234 GRSGYLLKPE FMRRPDKSFD PFTEVIVDGI VANALRVKVI SGQFLSDRKV ENSBTAP00000016609/1-1234 GRSGYLLKPE FMRRPDKSFD PFTEVIVDGI VANAVRVKVI SGQFLSDRKV ENSTTRP00000009751/1-1230 GRSGYLLKPE FMRRPDKSFD PFTEVIVDGI VANAVRVKVI SGQFLSDRKV bmy_10870T0/1-1216 GRSGYLLKPE FMRRPDKSFD PFTEVIVDGI VANAVRVKVI SGQFLSDRKV BACU005335/1-1251 GRSGYLLKPE FMRRPDKSFD PFTEVIVDGI VANAVRVKVI SGQFLSDRKV 751 800 ENSP00000443631/1-1234 GIYVEVDMFG LPVDTRRKYR TRTSQGNSFN PVWDEEPFDF PKVVLPTLAS ENSBTAP00000016609/1-1234 GIYVEVDMFG LPVDTRRKYR TRTSQGNSFN PVWDEEPFDF PKVVLPTLAS ENSTTRP00000009751/1-1230 GIYVEVDMFG LSVDTRRKYR TRTSQGNSFN PVWDEEPFDF PKVVLPTLAL bmy_10870T0/1-1216 GIYVEVDMFG LPVDTRRKYR TRTSQGNSFN PVWDEEPFDF PKVVLPTLAS BACU005335/1-1251 GIYVEVDMFG LPVDTRRKYR TRTSQGNSFN PVWDEEPFDF PKVVLPTLAS 801 850 ENSP00000443631/1-1234 LRIAAFEEGG KFVGHRILPV SAIRSGYHYV CLRNEANQPL CLPALLIYTE ENSBTAP00000016609/1-1234 LRIAAFEEGG KFVGHRILPV SAIRSGYHYI CLRNEANQPL CLPALLIYTE ENSTTRP00000009751/1-1230 LRIAAFEEGG KFVGHRILPV SAIRSGYHYI CLRNEANQPL CLPALLVYTE bmy_10870T0/1-1216 LRIAAFEEGG KFVGHRILPV SAIRSGYHYI CLRNEANQPL CLPALLIYTE BACU005335/1-1251 LRIAAFEEGG KFVGHRILPV SAIRSGYHYI CLRNEANQPL CLPALLIYTE 851 900 ENSP00000443631/1-1234 ASDYIPDDHQ DYAEALINPI KHVSLMDQRA RQLAALIGES EAQAGQETCQ ENSBTAP00000016609/1-1234 ASDYIPDDHQ DYAEALINPI KHVSLMDQRA KQLAALIGES EAQSGPETSQ ENSTTRP00000009751/1-1230 ASDYIPDDHQ DYAEALINPI KHVSLMDQRA KQLAALIGES EAQAGLETSQ bmy_10870T0/1-1216 ASDYIPDDHQ DYAEALINPI KHVSLMDQRA KQLAALIGES EAQAGPETSQ BACU005335/1-1251 ASDYIPDDHQ DYAEALINPI KHVSLMDQRA KQLAALIGES EAQAGPETSQ 901 950 ENSP00000443631/1-1234 DTQSQQLGSQ PSSNPTPSPL DASPRRPPGP TTSPASTSLS S----PGQRD ENSBTAP00000016609/1-1234 ETQTQQLGCQ LNPHPTPSPL DASPRRPPGP ATSPTSSSIS SSISSPGQRD ENSTTRP00000009751/1-1230 ETQSQQPGSQ LTPNPTPSPL DASPRRAPGP ITSSTSTSLS S----PGQRD bmy_10870T0/1-1216 ETQSQQPGSQ LTPNPTPSPL DTSPRRPPGP VTCPTSTSLS S----PGQRD BACU005335/1-1251 ETQSQQPGSQ LTPNPTPSPL ASSPRRPPGP VTCPTCTSLS S----PGQRD 951 1000 ENSP00000443631/1-1234 DLIASILS-- ---------- ---------- ---------- -------EVA ENSBTAP00000016609/1-1234 DLIASILS-- ---------- ---------- ---------- -------EVA ENSTTRP00000009751/1-1230 DLIASVLS-- ---------- ---------- ---------- -------EVA bmy_10870T0/1-1216 DLIASILSGR GQACSGGGAT PGGGGCSCRV GLPQPSLARP IFALLPTEVA BACU005335/1-1251 DLIASILS-- ---------- ---------- ---------- -------EVA 1001 1050 ENSP00000443631/1-1234 PTPLDELRGH KALVKLRSRQ ERDLRELRKK HQRKAVTLTR RLLDGLAQAQ ENSBTAP00000016609/1-1234 PAPLDELRGH KALVKLRSRQ ERDFRELYKK HQRKAVALTR RLLDNLAQAR ENSTTRP00000009751/1-1230 PAPLDELRGH KALLKLQSRQ ERDFRELHKK HQRKAVALTR RLLDNLAQAQ bmy_10870T0/1-1216 PAPLDELRGH KALVKLQSRQ ERDFRELHKK HQRKAVALTR RLLDSLAQAQ BACU005335/1-1251 PAPLDELRGH KALVKLQSRQ ERDFRELHKK HQRKAVALTR RLLDSLAQAQ 1051 1100 ENSP00000443631/1-1234 AEGRCRLRPG AL-------- ---------G GAADVEDTKE GEDEAKRYQE ENSBTAP00000016609/1-1234 AGSRCRQRPG VL-------- ---------S G----EDERA EEEEVSRYQE ENSTTRP00000009751/1-1230 AESRCRHRPG VL-------- ---------G G----EDERE EEEEVKRYQE bmy_10870T0/1-1216 AESRCRHRPG VL-------- ---------G G----EDERE XEEEVKRYQE BACU005335/1-1251 AESRCRHRPG VLPSPCDDLS ITQRGSPHRG G----EDERE EEEEVKRYQE 1101 1150 ENSP00000443631/1-1234 FQNRQVQSLL ELREAQVDAE AQRRLEHLRQ ALQRLREVVL DANTTQFKRL ENSBTAP00000016609/1-1234 FQKKQVQCLL ELREAQVDTE ADRRLEHLQQ AQLKLREVVL DAHMTQLKKL ENSTTRP00000009751/1-1230 FQKKQVQCLL ELREAQADTE AERRLEHLRQ AQQRLREIVM DAHTTQCKRL bmy_10870T0/1-1216 FQKKQVQCLL ELREAQADTE AERRLEHLRQ AQQKLREIVM DAHTTQFKRL BACU005335/1-1251 FQKKQVQCLL ELREAQADTE AERRLEHLRQ AQQKLREIVM DAHTTQFKRL 1151 1200 ENSP00000443631/1-1234 KEMNEREKKE LQKILDRKRH NSISEAKMRD KHKKEAELTE INRRHITESV ENSBTAP00000016609/1-1234 KEINEREKKE LQKILDRKRH NSISEAKTRE KHKKEAELTE INRRHITESV ENSTTRP00000009751/1-1230 KEMNEREKKE LQKILDRKRH NSISEAKTRE KHKKEAELTE INRRHITESV bmy_10870T0/1-1216 KEMNEREKKE LQKILDRKRH NSISEAKTRE KHKKEAELTE INRRHITESV BACU005335/1-1251 KEMNEREKKE LQKILDRKRH NSISEAKTRE KHKKEAELTE INRRHITESV 1201 1250 ENSP00000443631/1-1234 NSIRRLEEAQ KQRHDRLVAG QQQVLQQLAE EEPKLLAQLA QECQEQRARL ENSBTAP00000016609/1-1234 NSIRRLEEAQ KQRQERLVAG QQQILQQLAE EEPKLLAQLV QDCQEQRERL ENSTTRP00000009751/1-1230 NSIRRLEEAQ KQRQERLVAA QQQILQQLTE EEPKLLAQLA QECQEQRERL bmy_10870T0/1-1216 NSIRRLEEAQ KQRQERLVAM QQQILQQLTE EEPKLLAQLA QECQEQRERL BACU005335/1-1251 NSIRRLEEAQ KQRQERLVAM QQQILQQLTE EEPKLLAQLA QECQEQRERL 1251 1300 ENSP00000443631/1-1234 PQEIRRSLLG EMPEGLGDGP LVACASNGHA PGSSGHLSGA DSESQEENTQ ENSBTAP00000016609/1-1234 PQEIRWSLLG ETQEGLGDGH LVACASNGHA PGSSGHLPGA DSESQEETTK ENSTTRP00000009751/1-1230 PQEIRRSLLG ETPEGLGDGH LVACASNGHA PGSSGHLSGA DSESQEETTK bmy_10870T0/1-1216 PQEIRWSLLG ETPEGLGDGH LVACASNGHA PGSSGHLSGA DSESQEETTK BACU005335/1-1251 PQEIRWSLLG ETPEGLGDGH LVACASNGHA PGSSGHLSGA DSESQEETTK 1301 1350 ENSP00000443631/1-1234 L ENSBTAP00000016609/1-1234 L ENSTTRP00000009751/1-1230 L bmy_10870T0/1-1216 L BACU005335/1-1251 L