KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 16:59:24 2014 Check: 00 .. Name: ENSBTAP00000016618/1-1059 Len: 1237 Check: 178 Weight: 1.00 Name: ENSP00000287008/1-1237 Len: 1237 Check: 6561 Weight: 1.00 Name: ENSTTRP00000010294/1-1237 Len: 1237 Check: 1767 Weight: 1.00 Name: bmy_12402T0/1-1237 Len: 1237 Check: 9678 Weight: 1.00 Name: BACU015977/1-1215 Len: 1237 Check: 4873 Weight: 1.00 // 1 50 ENSBTAP00000016618/1-1059 MDCRARGRRC PESALLILEP APMGPLRHSP GPGERRLLLP TLLLALLLLL ENSP00000287008/1-1237 MDSGAGGRRC PEAALLILGP PRMEHLRHSP GPGGQRLLLP SMLLALLLLL ENSTTRP00000010294/1-1237 MDCRARGLRC PQAALLILEP ARMGSLRRSP GPGGQRLLPP ALLLALLLLL bmy_12402T0/1-1237 MDCRARGLRC PEAALLILEP ARMGSLRHSP GPGGQRLLLP ALLLALLLLL BACU015977/1-1215 ---------- ---------- --MGSLRHSP GPGGQRLLLP ALLLALLLLL 51 100 ENSBTAP00000016618/1-1059 APSPGHATRV VYKVAEEQPP NTLIGSLAAD YGFPDVGHLY KLEVGAPYLR ENSP00000287008/1-1237 APSPGHATRV VYKVPEEQPP NTLIGSLAAD YGFPDVGHLY KLEVGAPYLR ENSTTRP00000010294/1-1237 APSPGHATRV VYKVPEEQPP NTLIGSLAAD YGFPDVGHLY KLEVGAPYLR bmy_12402T0/1-1237 APSPGHATRV VYKVPEEQPP NTLIGSLAAD YGFPDVGHLY KLEVGAPYLR BACU015977/1-1215 APSPGHATRV VYKVPEEQPP NTLIGSLAAD YGFPDVGHLY KLEVGAPYLR 101 150 ENSBTAP00000016618/1-1059 VDGKTGDIFT TETSIDREGL RECQNQLPGE PCILEFEVSI TDLVQNGSPR ENSP00000287008/1-1237 VDGKTGDIFT TETSIDREGL RECQNQLPGD PCILEFEVSI TDLVQNGSPR ENSTTRP00000010294/1-1237 VDGKTGDIFT TETSIDREGL RECQNQLPGE PCILEFEVSI TDLVQNGSPR bmy_12402T0/1-1237 VDGKTGDIFT TETSIDREGL RECQNQLPGE PCILEFEVSI TDLVQNGSPR BACU015977/1-1215 VDGKTGDIFT TETSIDREGL RECQNQLPGE PCILEFEVSI TDLVQNGSPR 151 200 ENSBTAP00000016618/1-1059 LLEGQIEVQD INDNTPNFAS PVITLPIPEN TNIGSLFSIP VASDRDAGPN ENSP00000287008/1-1237 LLEGQIEVQD INDNTPNFAS PVITLAIPEN TNIGSLFPIP LASDRDAGPN ENSTTRP00000010294/1-1237 LLEGQIEVQD INDNTPNFAS PVITLPIPEN TNNGSLFSIP VASDRDAGPN bmy_12402T0/1-1237 LLEGQIEVQD INDNTPNFAS PVITLPIPEN TNIGSLFPIP VASDRDAGPN BACU015977/1-1215 LLEGQIEVQD INDNTPNFAS PVITLPIPEN TNIGSLFPIP VASDRDAGPN 201 250 ENSBTAP00000016618/1-1059 GVASYELQVG PEAQELFGLQ VAEDQEGKQP QLIVMGNLDR ERLDSYDLTI ENSP00000287008/1-1237 GVASYELQAG PEAQELFGLQ VAEDQEEKQP QLIVMGNLDR ERWDSYDLTI ENSTTRP00000010294/1-1237 GVASYELQVG PEAQGLFKLQ VAEDQDGKQP QLIVMGNLDR ERLDSYDLTI bmy_12402T0/1-1237 GVASYELQVG PEAQELFGLQ VAEDQDGKQP QLIVMGNLDR ERLDSYDLTI BACU015977/1-1215 GVASYELQVG PEAQELFGLQ VAEDQDGKQP QLIVMGNLDR ERLDSYDLTI 251 300 ENSBTAP00000016618/1-1059 KVQDGGNPPR ASSALLRVTV LDTNDNAPKF ERPSYEAELS ENSPIGHSVI ENSP00000287008/1-1237 KVQDGGSPPR ASSALLRVTV LDTNDNAPKF ERPSYEAELS ENSPIGHSVI ENSTTRP00000010294/1-1237 KVQDGGNPPR ASSALLRVTV LDTNDNAPKF ERPSYEAELS ENSPIGHSVI bmy_12402T0/1-1237 KVQDGGNPPR ASSALLRVTV LDTNDNAPKF ERPSYEAELS ENSPIGHSVI BACU015977/1-1215 KVQDGGNPPR ASSALLRVTV LDTNDNAPKF ERPSYEAELS ENSPIGHSVI 301 350 ENSBTAP00000016618/1-1059 QVKANDSDQG ANAEIDYTFH QAPEVVRRLL RLDRNTGLIT VQGPVDREDL ENSP00000287008/1-1237 QVKANDSDQG ANAEIEYTFH QAPEVVRRLL RLDRNTGLIT VQGPVDREDL ENSTTRP00000010294/1-1237 QVKANDSDQG ANAEIDYTFH QVPEVVRRLL RLDRNTGLIT VQGPVDREDL bmy_12402T0/1-1237 QVKANDSDQG ANAEIDYTFH QAPEVVRRLL RLDRNTGLIT VQGPVDREDL BACU015977/1-1215 QVKANDSDQG ANAEIDYTFH QVPEVVRRLL RLDRNTGLIT VQGPVDREDL 351 400 ENSBTAP00000016618/1-1059 STLRFSVLAK DRGTNPKSAR AQVVVTVKDM NDNAPTIEIR GIGLVTHQDG ENSP00000287008/1-1237 STLRFSVLAK DRGTNPKSAR AQVVVTVKDM NDNAPTIEIR GIGLVTHQDG ENSTTRP00000010294/1-1237 STLRFSVLAK DRGTNPKSAR AQVVVTVKDV NDNAPTIEIR GIGLVTHQDG bmy_12402T0/1-1237 STLRFSVLAK DRGTNPKSAR AQVVVTVKDM NDNAPTIEIR GIGLVTHQDG BACU015977/1-1215 STLRFSVLAK DRGTNPKSAR AQVVVTVKDM NDNAPTIEIR GIGLVTHQDG 401 450 ENSBTAP00000016618/1-1059 MANISEDVAE ETAVALVQVS DRDEGENAAV TCVVAGDVPF QLRQASETGS ENSP00000287008/1-1237 MANISEDVAE ETAVALVQVS DRDEGENAAV TCVVAGDVPF QLRQASETGS ENSTTRP00000010294/1-1237 MANISEDVAE ETAVALVQVS DRDEGENAAV TCVVAGDVPF QLRQASETGS bmy_12402T0/1-1237 MANISEDVAE ETAVALVQVS DRDEGENAAV TCVVAGDVPF QLRQASDTGS BACU015977/1-1215 MANISEDVAE ETAVALVQVS DRDEGENAAV TCVVAGDVPF QLRQASDTGS 451 500 ENSBTAP00000016618/1-1059 DSKKKYFLQT TTPLDYEKVK DYTIEIVAVD SGNPPLSSTN SLKVQVVDVN ENSP00000287008/1-1237 DSKKKYFLQT TTPLDYEKVK DYTIEIVAVD SGNPPLSSTN SLKVQVVDVN ENSTTRP00000010294/1-1237 DSKKKYFLQT TTPLDYEKVK DYTIEIVAVD SGNPPLSSTN SLKVQVVDVN bmy_12402T0/1-1237 DSKKKYFLQT TTPLDYEKVK DYTIEIVAVD SGNPPLSSTN SLKVQVVDVN BACU015977/1-1215 DSKKKYFLQT TTPLDYEKVK DYTIEIVAVD SGNPPLSSTN SLKVQVVDVN 501 550 ENSBTAP00000016618/1-1059 DNAPVFTQSV TEVAFPENNK PGEVVAEVTA SDADSGSNAE LVYSLEPEPA ENSP00000287008/1-1237 DNAPVFTQSV TEVAFPENNK PGEVIAEITA SDADSGSNAE LVYSLEPEPA ENSTTRP00000010294/1-1237 DNAPVFTQSV TEVAFPENNK PGEVVAEVTA SDADSGSNAE LVYSLEPEPA bmy_12402T0/1-1237 DNAPVFTQSV TEVAFPENNK PGEVVAEVTA SDADSGSNAE LVYSLEPEPA BACU015977/1-1215 DNAPVFTQSV TEVAFPENNK PGEVVAEVTA SDADSGSNAE LVYSLEPEPA 551 600 ENSBTAP00000016618/1-1059 AKGLFTISPE TGEIRVKTSL DREQRESYEL KVVAADRGSP SLQGTATVLV ENSP00000287008/1-1237 AKGLFTISPE TGEIQVKTSL DREQRESYEL KVVAADRGSP SLQGTATVLV ENSTTRP00000010294/1-1237 AKGLFTISPE TGEIRVKTSL DREQRESYEL KVVAADRGSP SLQGTATVLV bmy_12402T0/1-1237 AKGLFTISPE TGEIRVKTSL DREQRESYEL KVVAADRGSP SLQGTATVLV BACU015977/1-1215 AKGLFTISPE TGEIRVKTSL DREQRESYEL KVVAADRGSP SLQGTATVLV 601 650 ENSBTAP00000016618/1-1059 NVLDCNDNDP KFMLSGYNFS VMENMPALSP VGMVTVIDGD KGENARVQLT ENSP00000287008/1-1237 NVLDCNDNDP KFMLSGYNFS VMENMPALSP VGMVTVIDGD KGENAQVQLS ENSTTRP00000010294/1-1237 NVLDCNDNDP KFMLSGYNFS VMENMPALSP VGMVTVIDGD KGENARVQLT bmy_12402T0/1-1237 NVLDCNDNDP KFMLSGYNFS VMENMPALSP VGMVTVIDGD KGENARVQLT BACU015977/1-1215 NVLDCNDNDP KFMLSGYNFS VMENMPALSP VGMVTVIDGD KGENARVQLT 651 700 ENSBTAP00000016618/1-1059 VEQDNGDFVI QNGTGTILSS LSFDREQQST YTFQLKAVDG GVPPRSAYVG ENSP00000287008/1-1237 VEQDNGDFVI QNGTGTILSS LSFDREQQST YTFQLKAVDG GVPPRSAYVG ENSTTRP00000010294/1-1237 VEQDNGDFVI QNGTGTILSS LSFDREQQST YTFQLKAVDG GVPPRSAYVG bmy_12402T0/1-1237 VEQDNGDFVI QNGTGTILSS LSFDREHQST YTFQLKAVDG GVPPRSAYVG BACU015977/1-1215 VEQDNGDFVI QNGTGTILSS LSFDREQQST YTFQLKAVDG GVPPRSAYVG 701 750 ENSBTAP00000016618/1-1059 VTINVLDEND NAPFITAPSN TSHRLLTPQT RLGETVSQVT AEDIDSGVNA ENSP00000287008/1-1237 VTINVLDEND NAPYITAPSN TSHKLLTPQT RLGETVSQVA AEDFDSGVNA ENSTTRP00000010294/1-1237 VTINVLDEND NAPFITAPSN TSHRLLTPQT RLGETVSQVT AEDIDSGVNA bmy_12402T0/1-1237 VTINVLDEND NAPFITAPSN TSHRLLTPQT RLGETVSQVT AEDIDSGVNA BACU015977/1-1215 VTINVLDEND NAPFITAPSN TSHRLLTPQT RLGETVSQVT AEDIDSGVNA 751 800 ENSBTAP00000016618/1-1059 ELTYSIAGGN PYGLFQIGSH SGAITLEKEI ERRHHGLHRL VVKVSDRGKP ENSP00000287008/1-1237 ELIYSIAGGN PYGLFQIGSH SGAITLEKEI ERRHHGLHRL VVKVSDRGKP ENSTTRP00000010294/1-1237 ELTYSIAGGN PYGLFQIGSH SGAITLEKEL ERRHHGLHRL VVKVTDRGKP bmy_12402T0/1-1237 ELTYSIAGGN PYGLFQIGSH SGAITLEKEI ERRHHGLHRL VVKVSDRGKP BACU015977/1-1215 ELTYSIAGGN PYGLFQIGSH SGAITLEKEI ERRHHGLHRL VVKVSDRGKP 801 850 ENSBTAP00000016618/1-1059 PRYGTALVHL YVNETLANRT LLETLLGHSL DTPLDIDIAG DPEYERSKQR ENSP00000287008/1-1237 PRYGTALVHL YVNETLANRT LLETLLGHSL DTPLDIDIAG DPEYERSKQR ENSTTRP00000010294/1-1237 PRSGTALVHL YVNDTLANRT LLETLLGHSL DTPLDIDIAG DPEYERSKQR bmy_12402T0/1-1237 PRYGTALVHL YVNDTLANRT LLETLLGHSL DTPLDIDIAG DPEYERSKQR BACU015977/1-1215 PRYGTALVHL YVNDTLANRT LLETLLGHSL DTPLDIDIAG DPEYERSKQR 851 900 ENSBTAP00000016618/1-1059 GNILFGVVAG VVAVALLIAL AVLVRYCRQR EAKSGYQAGK KETKDLYAPK ENSP00000287008/1-1237 GNILFGVVAG VVAVALLIAL AVLVRYCRQR EAKSGYQAGK KETKDLYAPK ENSTTRP00000010294/1-1237 GNILFGVVAG VVAVALLIAL AVLVRYCRQR EAKSGYQAGK KETKDLYAPK bmy_12402T0/1-1237 SNILFGVVAG VVAVALLIAL AVLVRYCRQR EAKSGYQAGK KETKDLYAPK BACU015977/1-1215 SNILFGVVAG VVAVALLIAL AVLVRYCRQR EAKSGYQAGK KETKDLYAPK 901 950 ENSBTAP00000016618/1-1059 PSSKVSKGNK SKGKKSKSPK PVKPVEDEDE TGLQKSLKFN LMSDAPGDSP ENSP00000287008/1-1237 PSGKASKGNK SKGKKSKSPK PVKPVEDEDE AGLQKSLKFN LMSDAPGDSP ENSTTRP00000010294/1-1237 PSSKVSKGNK SKGKKSKSPK PVKPVEDEDE AGLQKSLKFN LMSDAPGDSP bmy_12402T0/1-1237 PSSKVSKGNK SKGKKSKSPK PVKPVEDEDE AGLQKSLKFN LMSDAPGDSP BACU015977/1-1215 PSSKVSKGNK SKGKKSKSPK PVKPVEDEDE AGLQKSLKFN LMSDAPGDSP 951 1000 ENSBTAP00000016618/1-1059 RIHLPLNYPP GSPDLGRHYR SNSPLPSIQL QPQSPSASKK HQVVQELPPA ENSP00000287008/1-1237 RIHLPLNYPP GSPDLGRHYR SNSPLPSIQL QPQSPSASKK HQVVQDLPPA ENSTTRP00000010294/1-1237 RIHLPLNYPP GSPDLGRHYR SNSPLPSIQL QPQSPSASKK HQVVQDLPPA bmy_12402T0/1-1237 RIHLPLNYPP GSPDLGRHYR SNSPLPSIQL QPQSPSASKK HQVVQDLPPA BACU015977/1-1215 CSHLPLNYPP GSPDLGRHYR SNSPLPSIQL QPQSPSASKK HQVVQDLPPA 1001 1050 ENSBTAP00000016618/1-1059 NTFVGTGDTT STGSEQYSDY SYRTN-PKYP SKQV------ ---------- ENSP00000287008/1-1237 NTFVGTGDTT STGSEQYSDY SYRTNPPKYP SKQLPHRRVT FSATSQAQEL ENSTTRP00000010294/1-1237 NTFVGTGDTT STGSEQYSDY SYRTNPPKYP SKQLPHRRVT FSATSQAQEL bmy_12402T0/1-1237 NTFVGTGDTT STGSEQYSDY SYRTNPPKYP SKQLPHRRVT FSATSQAQEL BACU015977/1-1215 NTFVGTGDTT STGSEQYSDY SYRTNPPKYP SKQLPHRRVT FSATSQAQEL 1051 1100 ENSBTAP00000016618/1-1059 ---------- ---------- ---------- ---------- ---------- ENSP00000287008/1-1237 QDPSQHSYYD SGLEESETPS SKSSSGPRLG PLALPEDHYE RTTPDGSIGE ENSTTRP00000010294/1-1237 QDPSQHSYYD SGLEESETPS SKSSSGPRLG PLALPEDHYE RTTPDGSIGE bmy_12402T0/1-1237 QDPSQHSYYD SGLEESETPS SKSSSGPRLG PLALPEDHYE RTTPDGSIGE BACU015977/1-1215 QDPSQHSYYD SGLEESETPS SKSSSGPRLG PLALPEDHYE RTTPDGSIGE 1101 1150 ENSBTAP00000016618/1-1059 ---------- ---------- ---------- ---------- ------GQPL ENSP00000287008/1-1237 MEHPENDLRP LPDVAMTGTC TRECSEFGHS DTCWMPGQSS PSRRTKSSAL ENSTTRP00000010294/1-1237 MEHPENDLRP LPDVAMTGTC TRECSEFGHS DTCWMPGQSS PSRRTKSSAL bmy_12402T0/1-1237 MEHPENDLRP LPDVAMTGTC TRECSEFGHS DTCWMPGQSS PSRRTKSSAL BACU015977/1-1215 MEHPENDLRP LPDVAMTGTC TRECSEFGHS DTCWMPGQSS PSRRTKSSAL 1151 1200 ENSBTAP00000016618/1-1059 RLST------ ---------- -PQPP----- ---------- ----PHPYHG ENSP00000287008/1-1237 KLSTFVPYQD RGGQEPAGAG SPSPPEDRNT KTAPVRLLPS YSAFSHSSHD ENSTTRP00000010294/1-1237 KLSTFVPYQD RGGQEPAGAG SPSPPEDRNT KTAPVRLLPS YSAFSHSSHD bmy_12402T0/1-1237 KLSTFVPYQD RGGQEPAGAG SPSPPEDRNT KTAPVRLLPS YSAFSHSSHD BACU015977/1-1215 KLSTFVPYQD RGGQEPAGAG SPSPPEDRNT KTAPVRLLPS YSAFSHSSHD 1201 1250 ENSBTAP00000016618/1-1059 AIWT------ ---------- ---------- ---EVWE ENSP00000287008/1-1237 SCKDSATLEE IPLTQTSDFP PAATPASAQT AKREIYL ENSTTRP00000010294/1-1237 SCKDSATLEE IPLTQTSDFP PAATPASAQT AKREIYL bmy_12402T0/1-1237 SCKDSATLEE IPLTQTSDFP PAATPASAQT AKREIYL BACU015977/1-1215 SCKDSATLEE IPLTQTSDFP PAATPASAQT AKREIYL