KEY:
ENSP* - Homo sapiens (Human)
ENSBTA* - Bos taurus (Cow)
ENSTTR* - Tursiops truncatus (Dolphin)
bmy_* - Balaena mysticetus (Bowhead whale)
BACU* - Balaenoptera acutorostrata (Minke whale)
Copy from below the line for a valid .msf file.
----------------------------------------------------------------------------------
NoName MSF: 5 Type: P Thu May 15 16:59:25 2014 Check: 00 ..
Name: ENSP00000365411/1-666 Len: 671 Check: 2592 Weight: 1.00
Name: ENSTTRP00000002893/1-659 Len: 671 Check: 8749 Weight: 1.00
Name: ENSBTAP00000016629/1-658 Len: 671 Check: 4816 Weight: 1.00
Name: bmy_07522T0/1-496 Len: 671 Check: 740 Weight: 1.00
Name: BACU001741/1-504 Len: 671 Check: 6880 Weight: 1.00
//
1 50
ENSP00000365411/1-666 MGESSEDIDQ MFSTLLGEMD LLTQSLGVDT LPPPDPNPPR AEFNYSVGFK
ENSTTRP00000002893/1-659 MGESNEDIDQ MFSNLLGEMD LLTQSLGVDT VPPPEPKPSR AEFNYSVGFK
ENSBTAP00000016629/1-658 MGESNEDIDQ MFSNLLGEMD LLTQSLGVDI LPPPDPKPPR AEFNYSVGFK
bmy_07522T0/1-496 MGESNEDIDQ MFSNLLGEMD LLTQSLGVDT LPPPEPKPPR AEFNYSVGFK
BACU001741/1-504 ---------- --MNNFGGWD LFSQSLGVDT LPPPEPKPPR AEFNYSVGFK
51 100
ENSP00000365411/1-666 DLNESLNALE DQDLDALMAD LVADISEAEQ RTIQAQKESL QNQHHSASLQ
ENSTTRP00000002893/1-659 DLNESLNALE DQDLDALMAD LVADIREAEQ RTIQAQKESS QSRPHSASLD
ENSBTAP00000016629/1-658 DLNESLNALE DQDLDALMAD LVADISEAEQ RTIQAQKESP QKQPPSASLC
bmy_07522T0/1-496 DLNESLNALE DQDLDALMAD LVADIREAEQ RTIQAQKESS QSRPYSASLD
BACU001741/1-504 DLNESLNALE DQDLDALMAD LVADIREAEQ RTIQAQKESS QSRPYSASLD
101 150
ENSP00000365411/1-666 ASIFSGAASL GYGTNVAATG ISQYEDDLPP PPADPVLDLP LPPPPPEPLS
ENSTTRP00000002893/1-659 IPSFSGAASL GYTANVAAPS ISQYEDDLPP PPADPMLDLP LPPPAPEPLS
ENSBTAP00000016629/1-658 VPSFSDTASL GYGANVAAP- -SQYDDDLPP PPADPMLDLP LPPPPPGPIS
bmy_07522T0/1-496 VPSFSGAASL GYAANVAAPS ISQYEDDLPP PPADPMLDLP LPPPAPEPLS
BACU001741/1-504 VPSFSGAASL GYAANVAAPS ISQYEDDLPP PPADPMLDLP LPPPAPEPLS
151 200
ENSP00000365411/1-666 QEEEEAQAKA DKIKLALEKL KEAKVKKLVV KVHMNDNSTK SLMVDERQLA
ENSTTRP00000002893/1-659 QEEEEAQAKA DKIKLALEKL KEAKVKKLVV KVHMNDNSTK SLMVDERQLA
ENSBTAP00000016629/1-658 QEEEEAQAKA DKIKLALEKL KEAKVKKLVV KILMNDNSSK SLMVDERQLA
bmy_07522T0/1-496 QEEEEAQAKA DKIKLALEKL KEAKVKKLVV KVHMNDNSTK SLMVDERQLA
BACU001741/1-504 QEEEEAQAKA DKIKLALEKL KEAKVKKLVV KVHMNDNSTK SLMVDERQLA
201 250
ENSP00000365411/1-666 RDVLDNLFEK THCDCNVDWC LYEIYPELQI ERFFEDHENV VEVLSDWTRD
ENSTTRP00000002893/1-659 RDVLDNLFEK THCDCNVDWC LYEIYPELQI ERFFEDHENV VEVLSDWTRD
ENSBTAP00000016629/1-658 RDVLDNLFEK THCDCNVDWC LYEIYPELQI ERFFEDHENV VEILSDWTRD
bmy_07522T0/1-496 RDVLDNLFEK THCDCNVDWC LYEIYPELQI ERFFEDHENV VEVLSDWTRD
BACU001741/1-504 RDVLDNLFEK THCDCNVDWC LYEIYPELQI ERFFEDHENV VEVLSDWTRD
251 300
ENSP00000365411/1-666 TENKILFLEK EEKYAVFKNP QNFYLDNRGK KESKETNEKM NAKNKESLLE
ENSTTRP00000002893/1-659 TENKVLFLEK EEKYAVFKNP QXXXXXXXXX XXXXXXXXXX XXXXXXXXXX
ENSBTAP00000016629/1-658 TENKLLFLEK EEKYAVFKNP QNFYLDNKGK KENKETNEKM NAKNKESLLE
bmy_07522T0/1-496 TENKVLFLEK EEKYAVFKNP QNFYLDNKGK KESKETNEKM NAKNKESLLE
BACU001741/1-504 TENKVLFLEK EEKYAVFKNP QNFYLDNKGK KENKETNEKM NAKNKESLLE
301 350
ENSP00000365411/1-666 ESFCGTSIIV PELEGALYLK EDGKKSWKRR YFLLRASGIY YVPKGKTKTS
ENSTTRP00000002893/1-659 ESFCGTSIIV PELEGALYLK EDGKKSWKRR YFLLRASGIY YVPKGKTKTS
ENSBTAP00000016629/1-658 ESFCGTSVIV PELEGALYLK EDGKKSWKRR YFLLRASGIY YVPKGKTKTS
bmy_07522T0/1-496 ESFCGTSIIV PELEGALYLK EDGKKSWKRR YFLLRASGIY YVPKGKTKTS
BACU001741/1-504 ESFCGTSIIV PELEGALYLK EDGKKSWKRR YFLLRASGIY YVPKGKTKTS
351 400
ENSP00000365411/1-666 RDLACFIQFE NVNIYYGTQH KMKYKAPTDY CFVLKHPQIQ KESQYIKYLC
ENSTTRP00000002893/1-659 RDLACFIQFE NVNIYYGIQC KIKYKAPTDY CFVLKHPQIQ KESQYIKYLC
ENSBTAP00000016629/1-658 RDLACFIQFE NVNIYYGIQC KMKYKAPTDY CFVLKHPQIQ KESQYIKYLC
bmy_07522T0/1-496 RDLACFIQFE NVNIYYGIQC KMKYKAPTDY CFVVKHPQIQ KESQYIKYLC
BACU001741/1-504 RDLACFIQFE NVNIYYGIQC KMKYKAPTDY CFVLKHPQIQ KESQYIKYLC
401 450
ENSP00000365411/1-666 CDDTRTLNQW VMGIRIAKYG KTLYDNYQRA VAKAGLASRW TNLGTVNAAA
ENSTTRP00000002893/1-659 CDDARMLNQW VTGIRIAKYG KTLYDSYQRA MARAGLASRW TNLGTVNAAP
ENSBTAP00000016629/1-658 CDDARALSQW VTGIRIAKYG KTLYDNYQRA MARAGLASRW TNLGTVNAAP
bmy_07522T0/1-496 CDDARMLNQW VTGIRIAKYG KTLYDNYQRA MARAGLASRW TNLGTVNAAP
BACU001741/1-504 CDDARMLNQW VTGIRIAKYG KTLYDNYQRA MARAGLASRW TNLGTVNAAP
451 500
ENSP00000365411/1-666 PAQPSTG-PK TGTTQPNGQI PQATHSVSAV LQEAQRHAET SKDKKPALG-
ENSTTRP00000002893/1-659 PAPSSTG-VK TGTTQANGQI PQAAHSMSTV LGEAQRHVET TKDKK--SGL
ENSBTAP00000016629/1-658 PAPPSTG-VK TGTTQANGQL PQATQSMNTA LGEDWRQLET TKDKKPGPGL
bmy_07522T0/1-496 PAPPSTGTLQ RGESDTCSEL RGCVQTYLMY FIETELCRHC TE--------
BACU001741/1-504 PAPPSTG-VK TGTTQANGQI PQAAHSMSTV LGEAQRHVET TK--------
501 550
ENSP00000365411/1-666 NHHDPAVPRA PHAPKSSL-P PPPPVRRSSD T-SGSPATPL KAKGTGGGGL
ENSTTRP00000002893/1-659 GSHDP-APRA QTLPMSSL-P PPPPVRRSSE VGCSSPGTPP KVKGT-AAGF
ENSBTAP00000016629/1-658 GSHDPGAPRA QPLPKSSLPP PPPPVRRSSD VGGGSPGTPP KAKGA-AARF
bmy_07522T0/1-496 ---------- ---------- ---------- ---------- ----------
BACU001741/1-504 ---------- ---------- ---------- ---------- ----------
551 600
ENSP00000365411/1-666 PAPPDDFLPP -PPPPPPLDD PELPPPPPDF MEPPPDFVPP PPPSYAGIAG
ENSTTRP00000002893/1-659 PAPPHDLLPP -PPPPPPLED DELPPPPPDF SDAPPDFVPP PPPPSFAGDA
ENSBTAP00000016629/1-658 PAPPDDFLPP PPPPPPPLQD DELPPPPPDF NDAPPDFVPP PPPSF----A
bmy_07522T0/1-496 ------YIPS ---------- ---------- ---------- ----------
BACU001741/1-504 ------LLKS --------DN LILQCTFSDY ---------- ----------
601 650
ENSP00000365411/1-666 SELPPPPPPP PAPAPAPVPD SARPPPAVAK RPPVPPKRQE NPGHPGGAGG
ENSTTRP00000002893/1-659 GSSLPPPPPP ----PALVPE AAKPTPVVAK RPPAPPKRQA NPGPPGG-GG
ENSBTAP00000016629/1-658 EDLPPPPPPP ----PALAPE SVRTPPVVVK RPPPPPKRQE NPGPPGG-GG
bmy_07522T0/1-496 ---------- ---------- ---------- ---------- ----------
BACU001741/1-504 ---------- ---------- ---------- ---------- ----------
651 700
ENSP00000365411/1-666 GEQDFMSDLM KALQKKRGNV S
ENSTTRP00000002893/1-659 GEQDFMSDLM KALQKKRSNM S
ENSBTAP00000016629/1-658 GEQDFMSDLM KALQKKRGNV S
bmy_07522T0/1-496 ---------- ---------- -
BACU001741/1-504 ----YFHGFC NAN------- -