KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 16:59:30 2014 Check: 00 .. Name: BACU017029/1-511 Len: 535 Check: 5189 Weight: 1.00 Name: ENSP00000264151/1-414 Len: 535 Check: 168 Weight: 1.00 Name: ENSBTAP00000016671/1-414 Len: 535 Check: 3664 Weight: 1.00 Name: bmy_16655T0/1-414 Len: 535 Check: 1673 Weight: 1.00 Name: ENSTTRP00000004929/1-438 Len: 535 Check: 2313 Weight: 1.00 // 1 50 BACU017029/1-511 MNVGVAHSEV NPNTRVMNSR GMWLTYALGV GLLHIVLLSI PFFSVPVAWT ENSP00000264151/1-414 ---------- ---------- MLILTKTAGV ---------- -FF------- ENSBTAP00000016671/1-414 ---------- ---------- MLILNKTAGV ---------- -FF------- bmy_16655T0/1-414 ---------- ---------- MLILNKTAGV ---------- -FS------- ENSTTRP00000004929/1-438 ---------- ---------- MLILNKTAGV ---------- -FS------- 51 100 BACU017029/1-511 LTNVIHNLGI ANMNVGVAHS EVNPNTRVMN SRGMWLTYAL GVGLLHIVLL ENSP00000264151/1-414 ---------- ---------- --KPSKRKVY EFLRSFNFHP GTLFLHKIVL ENSBTAP00000016671/1-414 ---------- ---------- --KPSRRKIY AFLGSFHFHP GKLFLHKLVL bmy_16655T0/1-414 ---------- ---------- --KPSXRNMY EFLRSFNFHP GKLFLHKLVL ENSTTRP00000004929/1-438 ---------- ---------- --KPSKRNMY EFLRSFNFHP GKLFLHKLVL 101 150 BACU017029/1-511 SIPFFSVPVA WTLTNVIHNL GMYVFLHAVK GTPFETPDQG KARLLTHWEQ ENSP00000264151/1-414 GI---ETSCD DTAAAVVDET GNVL------ GEAIHSQTEV HLK------- ENSBTAP00000016671/1-414 GI---ETSCD DTAAAVVDEA GNVL------ GEAIHSQTEV HLK------- bmy_16655T0/1-414 GI---ETSCD DTAAAVVDET GNVL------ GEAIHSQTEV HLK------- ENSTTRP00000004929/1-438 GI---ETSCD DTAAAVVDET GNVL------ GEAIHSQTEV HLK------- 151 200 BACU017029/1-511 LDYGVQFTSS RKFFTISPII LTGGIIPPVA QQLHRENIQR IVQEALSASK ENSP00000264151/1-414 ---------- ---------- -TGGIVPPAA QQLHRENIQR IVQEALSASG ENSBTAP00000016671/1-414 ---------- ---------- -TGGIIPPVA QQLHRENIQR IVQEALSASE bmy_16655T0/1-414 ---------- ---------- -TGGIIPPVA QQLHRENIQR IVQEALSASK ENSTTRP00000004929/1-438 ---------- ---------- -TGGIIPPVA QQLHRENIQR IVQEALSASK 201 250 BACU017029/1-511 VSPSELSAIA TTIKPGLALS LGVGLSFSLQ LVDQLKKPFI PIHHMEAHAL ENSP00000264151/1-414 VSPSDLSAIA TTIKPGLALS LGVGLSFSLQ LVGQLKKPFI PIHHMEAHAL ENSBTAP00000016671/1-414 VSPSELSAVA TTIKPGLALS LGVGLSFSLQ LVDQFKKPFI PIHHMEAHAL bmy_16655T0/1-414 VSPSELSAIA TTIKPGLALS LGVGLSFSLQ LVDQLKKPFI PIHHMEAHAL ENSTTRP00000004929/1-438 VSPSELSAIA TTIKPGLALS LGVGLSFSLQ LVDQLKKPFI PIHHMEAHAL 251 300 BACU017029/1-511 TIRLTNKVEF PFLVLLISGG HCLLALVRGV SDFLLLGKSL DIAPGDMLDK ENSP00000264151/1-414 TIRLTNKVEF PFLVLLISGG HCLLALVQGV SDFLLLGKSL DIAPGDMLDK ENSBTAP00000016671/1-414 TIRLTNKVEF PFLVLLISGG HCLLALVRGV SDFLLLGKSL DIAPGDMLDK bmy_16655T0/1-414 TIRLTNKVEF PFLVLLISGG HCLLALVRGV SDFLLLGKSL DIAPGDMLDK ENSTTRP00000004929/1-438 TIRLTNKVEF PFLVLLISGG HCLLALVRGV SDFLLLGKSL DIAPGDMLDK 301 350 BACU017029/1-511 VARRLSLIKH PECSTMSGGK AIEHLAKQGN KLHFDFKPPM QRARNCDFSF ENSP00000264151/1-414 VARRLSLIKH PECSTMSGGK AIEHLAKQGN RFHFDIKPPL HHAKNCDFSF ENSBTAP00000016671/1-414 VARRLSLIKH PECSTMSGGK AIEHLAKQGN RLHFDFQPPM QRAKNCDFSF bmy_16655T0/1-414 VARRLSLIKH PECSTMSGGK AIEHLAKQGN KLHFDFKPPM QRAKNCDFSF ENSTTRP00000004929/1-438 VARRLSLIKH PECSTMSGGK AIEHLAKQGN KLHFDFKPPM QHAKNCDFSF 351 400 BACU017029/1-511 SGLHHVIDKM IMQKEKEEGV ---------- ---------- ----EKGQIL ENSP00000264151/1-414 TGLQHVTDKI IMKKEKEEGI ---------- ---------- ----EKGQIL ENSBTAP00000016671/1-414 SGLQHVIDKM IMQKEKEEGI ---------- ---------- ----EQGQVL bmy_16655T0/1-414 SGLHHVIDKM ILQKEKEEGI ---------- ---------- ----EKGQIL ENSTTRP00000004929/1-438 SGLHHIIDKM IMQKEKEEGI FLISKVGQIS NTGLYLKIPA HSCRYKGQIL 401 450 BACU017029/1-511 SSAADIAAAV QHTIACHIAK RTHRAILFCK QRDLLCQSNA VLVVSGGVAS ENSP00000264151/1-414 SSAADIAATV QHTMACHLVK RTHRAILFCK QRDLLPQNNA VLVASGGVAS ENSBTAP00000016671/1-414 SSAADIAAAV QHTVACHIAK RTHRALLFCK QRGFLHQSNA VLVVSGGVAS bmy_16655T0/1-414 SSAADIAAAV QHTVACHIAK RTHRAILFCK QRDLLCQSNA VLVVSGGVAS ENSTTRP00000004929/1-438 SSAADIAAAV QHTVACHIAK RTHRAILFCK QRDLLCQSNA VLVVSGGVAS 451 500 BACU017029/1-511 NLYIRKALEI VTDATQCTLL CPPPRLCTDN GIMIAWNGVE RLRAGLGILH ENSP00000264151/1-414 NFYIRRALEI LTNATQCTLL CPPPRLCTDN GIMIAWNGIE RLRAGLGILH ENSBTAP00000016671/1-414 NLYIRKALEI VTNATQCTLL CPPPRLCTDN GVMIAWNGVE RLRAGLGILH bmy_16655T0/1-414 NLYIRKALEI VTNATQCTLL CPPPRLCTDN GIMIAWNGVE RLRAGLGILH ENSTTRP00000004929/1-438 NLHIRKALEI VTDATQCTLL CPPPRLCTDN GVMIAWNGVE RLRAGLGILH 501 550 BACU017029/1-511 STEGIRYEPK CPLGADISKE VGEAAIKVPR LKMKI ENSP00000264151/1-414 DIEGIRYEPK CPLGVDISKE VGEASIKVPQ LKMEI ENSBTAP00000016671/1-414 NTEGIRYEPK CPLGVDISKE VGEAAIKVPR LKMKI bmy_16655T0/1-414 STEGIRYEPK CPLGADISKE VGEAAIKVPR LNMKI ENSTTRP00000004929/1-438 STEGIRYEPK CPLGADISKE VGEAAIKVPR LKMKI