KEY:
ENSP* - Homo sapiens (Human)
ENSBTA* - Bos taurus (Cow)
ENSTTR* - Tursiops truncatus (Dolphin)
bmy_* - Balaena mysticetus (Bowhead whale)
BACU* - Balaenoptera acutorostrata (Minke whale)
Copy from below the line for a valid .msf file.
----------------------------------------------------------------------------------
NoName MSF: 5 Type: P Thu May 15 16:59:30 2014 Check: 00 ..
Name: BACU017029/1-511 Len: 535 Check: 5189 Weight: 1.00
Name: ENSP00000264151/1-414 Len: 535 Check: 168 Weight: 1.00
Name: ENSBTAP00000016671/1-414 Len: 535 Check: 3664 Weight: 1.00
Name: bmy_16655T0/1-414 Len: 535 Check: 1673 Weight: 1.00
Name: ENSTTRP00000004929/1-438 Len: 535 Check: 2313 Weight: 1.00
//
1 50
BACU017029/1-511 MNVGVAHSEV NPNTRVMNSR GMWLTYALGV GLLHIVLLSI PFFSVPVAWT
ENSP00000264151/1-414 ---------- ---------- MLILTKTAGV ---------- -FF-------
ENSBTAP00000016671/1-414 ---------- ---------- MLILNKTAGV ---------- -FF-------
bmy_16655T0/1-414 ---------- ---------- MLILNKTAGV ---------- -FS-------
ENSTTRP00000004929/1-438 ---------- ---------- MLILNKTAGV ---------- -FS-------
51 100
BACU017029/1-511 LTNVIHNLGI ANMNVGVAHS EVNPNTRVMN SRGMWLTYAL GVGLLHIVLL
ENSP00000264151/1-414 ---------- ---------- --KPSKRKVY EFLRSFNFHP GTLFLHKIVL
ENSBTAP00000016671/1-414 ---------- ---------- --KPSRRKIY AFLGSFHFHP GKLFLHKLVL
bmy_16655T0/1-414 ---------- ---------- --KPSXRNMY EFLRSFNFHP GKLFLHKLVL
ENSTTRP00000004929/1-438 ---------- ---------- --KPSKRNMY EFLRSFNFHP GKLFLHKLVL
101 150
BACU017029/1-511 SIPFFSVPVA WTLTNVIHNL GMYVFLHAVK GTPFETPDQG KARLLTHWEQ
ENSP00000264151/1-414 GI---ETSCD DTAAAVVDET GNVL------ GEAIHSQTEV HLK-------
ENSBTAP00000016671/1-414 GI---ETSCD DTAAAVVDEA GNVL------ GEAIHSQTEV HLK-------
bmy_16655T0/1-414 GI---ETSCD DTAAAVVDET GNVL------ GEAIHSQTEV HLK-------
ENSTTRP00000004929/1-438 GI---ETSCD DTAAAVVDET GNVL------ GEAIHSQTEV HLK-------
151 200
BACU017029/1-511 LDYGVQFTSS RKFFTISPII LTGGIIPPVA QQLHRENIQR IVQEALSASK
ENSP00000264151/1-414 ---------- ---------- -TGGIVPPAA QQLHRENIQR IVQEALSASG
ENSBTAP00000016671/1-414 ---------- ---------- -TGGIIPPVA QQLHRENIQR IVQEALSASE
bmy_16655T0/1-414 ---------- ---------- -TGGIIPPVA QQLHRENIQR IVQEALSASK
ENSTTRP00000004929/1-438 ---------- ---------- -TGGIIPPVA QQLHRENIQR IVQEALSASK
201 250
BACU017029/1-511 VSPSELSAIA TTIKPGLALS LGVGLSFSLQ LVDQLKKPFI PIHHMEAHAL
ENSP00000264151/1-414 VSPSDLSAIA TTIKPGLALS LGVGLSFSLQ LVGQLKKPFI PIHHMEAHAL
ENSBTAP00000016671/1-414 VSPSELSAVA TTIKPGLALS LGVGLSFSLQ LVDQFKKPFI PIHHMEAHAL
bmy_16655T0/1-414 VSPSELSAIA TTIKPGLALS LGVGLSFSLQ LVDQLKKPFI PIHHMEAHAL
ENSTTRP00000004929/1-438 VSPSELSAIA TTIKPGLALS LGVGLSFSLQ LVDQLKKPFI PIHHMEAHAL
251 300
BACU017029/1-511 TIRLTNKVEF PFLVLLISGG HCLLALVRGV SDFLLLGKSL DIAPGDMLDK
ENSP00000264151/1-414 TIRLTNKVEF PFLVLLISGG HCLLALVQGV SDFLLLGKSL DIAPGDMLDK
ENSBTAP00000016671/1-414 TIRLTNKVEF PFLVLLISGG HCLLALVRGV SDFLLLGKSL DIAPGDMLDK
bmy_16655T0/1-414 TIRLTNKVEF PFLVLLISGG HCLLALVRGV SDFLLLGKSL DIAPGDMLDK
ENSTTRP00000004929/1-438 TIRLTNKVEF PFLVLLISGG HCLLALVRGV SDFLLLGKSL DIAPGDMLDK
301 350
BACU017029/1-511 VARRLSLIKH PECSTMSGGK AIEHLAKQGN KLHFDFKPPM QRARNCDFSF
ENSP00000264151/1-414 VARRLSLIKH PECSTMSGGK AIEHLAKQGN RFHFDIKPPL HHAKNCDFSF
ENSBTAP00000016671/1-414 VARRLSLIKH PECSTMSGGK AIEHLAKQGN RLHFDFQPPM QRAKNCDFSF
bmy_16655T0/1-414 VARRLSLIKH PECSTMSGGK AIEHLAKQGN KLHFDFKPPM QRAKNCDFSF
ENSTTRP00000004929/1-438 VARRLSLIKH PECSTMSGGK AIEHLAKQGN KLHFDFKPPM QHAKNCDFSF
351 400
BACU017029/1-511 SGLHHVIDKM IMQKEKEEGV ---------- ---------- ----EKGQIL
ENSP00000264151/1-414 TGLQHVTDKI IMKKEKEEGI ---------- ---------- ----EKGQIL
ENSBTAP00000016671/1-414 SGLQHVIDKM IMQKEKEEGI ---------- ---------- ----EQGQVL
bmy_16655T0/1-414 SGLHHVIDKM ILQKEKEEGI ---------- ---------- ----EKGQIL
ENSTTRP00000004929/1-438 SGLHHIIDKM IMQKEKEEGI FLISKVGQIS NTGLYLKIPA HSCRYKGQIL
401 450
BACU017029/1-511 SSAADIAAAV QHTIACHIAK RTHRAILFCK QRDLLCQSNA VLVVSGGVAS
ENSP00000264151/1-414 SSAADIAATV QHTMACHLVK RTHRAILFCK QRDLLPQNNA VLVASGGVAS
ENSBTAP00000016671/1-414 SSAADIAAAV QHTVACHIAK RTHRALLFCK QRGFLHQSNA VLVVSGGVAS
bmy_16655T0/1-414 SSAADIAAAV QHTVACHIAK RTHRAILFCK QRDLLCQSNA VLVVSGGVAS
ENSTTRP00000004929/1-438 SSAADIAAAV QHTVACHIAK RTHRAILFCK QRDLLCQSNA VLVVSGGVAS
451 500
BACU017029/1-511 NLYIRKALEI VTDATQCTLL CPPPRLCTDN GIMIAWNGVE RLRAGLGILH
ENSP00000264151/1-414 NFYIRRALEI LTNATQCTLL CPPPRLCTDN GIMIAWNGIE RLRAGLGILH
ENSBTAP00000016671/1-414 NLYIRKALEI VTNATQCTLL CPPPRLCTDN GVMIAWNGVE RLRAGLGILH
bmy_16655T0/1-414 NLYIRKALEI VTNATQCTLL CPPPRLCTDN GIMIAWNGVE RLRAGLGILH
ENSTTRP00000004929/1-438 NLHIRKALEI VTDATQCTLL CPPPRLCTDN GVMIAWNGVE RLRAGLGILH
501 550
BACU017029/1-511 STEGIRYEPK CPLGADISKE VGEAAIKVPR LKMKI
ENSP00000264151/1-414 DIEGIRYEPK CPLGVDISKE VGEASIKVPQ LKMEI
ENSBTAP00000016671/1-414 NTEGIRYEPK CPLGVDISKE VGEAAIKVPR LKMKI
bmy_16655T0/1-414 STEGIRYEPK CPLGADISKE VGEAAIKVPR LNMKI
ENSTTRP00000004929/1-438 STEGIRYEPK CPLGADISKE VGEAAIKVPR LKMKI