KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 16:59:34 2014 Check: 00 .. Name: ENSP00000309572/1-1132 Len: 1157 Check: 1853 Weight: 1.00 Name: ENSBTAP00000016685/1-1125 Len: 1157 Check: 5893 Weight: 1.00 Name: ENSTTRP00000003636/1-1124 Len: 1157 Check: 9739 Weight: 1.00 Name: bmy_05116T0/1-1129 Len: 1157 Check: 7387 Weight: 1.00 Name: BACU018809/1-1064 Len: 1157 Check: 5117 Weight: 1.00 // 1 50 ENSP00000309572/1-1132 MPRAPRCRAV RSLLRSHYRE VLPLATFVRR LGPQGWRLVQ RGDPAAFRAL ENSBTAP00000016685/1-1125 MPRAPRCRAV RALLRASYRQ VLPLAAFVRR LRPQGHRLVR RGDPAAFRAL ENSTTRP00000003636/1-1124 MPRAPRCRAV RALLRDRYRQ VLPLATFVRR LGPEDRRLVR RGDPVAFRAL bmy_05116T0/1-1129 MPRAPRCRAV RALLRDRYRQ VLPLATFVRR LGPEDRRLVR RGDPVAFRAL BACU018809/1-1064 ---------- ---------- ---------- ---------- ---------- 51 100 ENSP00000309572/1-1132 VAQCLVCVPW DARPPPAAPS FRQVSCLKEL VARVLQRLCE RGAKNVLAFG ENSBTAP00000016685/1-1125 VAQCLVCVPW DAQPPPAAPS FRQVSCLKEL VARVVQRLCE RGARNVLAFG ENSTTRP00000003636/1-1124 VAQCLVCVPW DAQPPPAAPS FRQVSCLKEL VARVVQRLCE RGARNVXXXX bmy_05116T0/1-1129 VAQCLVCVPW DAQPPPAAPS FRQVSCLKEL VARVVQRLCE RGARNVLAFG BACU018809/1-1064 ---------W DAQPPPAAPS FRQVSCLKEL VARVVQRLCE GGARNVLAFG 101 150 ENSP00000309572/1-1132 FALLDGARGG PPEAFTTSVR SYLPNTVTDA LRGSGAWGLL LRRVGDDVLV ENSBTAP00000016685/1-1125 FTLLAGARGG PPVAFTTSVR SYLPNTVTDT LRGSGAWGLL LHRVGDDVLT ENSTTRP00000003636/1-1124 XXXXXXXXXX XPVAFTTSVR SY-PNTVTDT LRGSGAWGLL LRRVGDDVLT bmy_05116T0/1-1129 FALLDGARGG PPVAFTTSVR SYLPNTVTDT LRGSGAWGLL LRRVGDDVLT BACU018809/1-1064 FALLDGARGG PPVAFTTSVR SYLPNTVTDT LRGSGAWGLL LRRVGDDVLT 151 200 ENSP00000309572/1-1132 HLLARCALFV LVAPSCAYQV CGPPLYQLGA ATQA--RPPP HASGPRRRLG ENSBTAP00000016685/1-1125 HLLSRCALYL LVPPTCAYQV CGPPLYDLRA AAAAARRPTR QVGGTRAGFG ENSTTRP00000003636/1-1124 H-LARCALYL LVPPSC-YQV CGPPLYDLCT AAAA--RPTR RAGGTRTGLG bmy_05116T0/1-1129 HLLARCALYL LVPPSCAYQV CGPPLYDLCT AAAA--RPTR RAGGTRTGLG BACU018809/1-1064 HLLARCALYL LVPPSCA--- ---------- ---------- ---GVRTGLG 201 250 ENSP00000309572/1-1132 CERA--WNHS VREAGVPLGL PAPGARRRGG SASRSLPLPK RPRRGAAPEP ENSBTAP00000016685/1-1125 LPRPASSNGG HGEAEGLLEA RAQGARRRRS SARGRLPPAK RPRRGL--EP ENSTTRP00000003636/1-1124 LTRQA-RNGG DGEAGGPREL PAKGTRRRRG GAGGRPPPAK KQRHGL--EP bmy_05116T0/1-1129 LTRQA-GNGG DGEAGGPREL PAKGARRRRG GAGGRPPPAK KPRHGL--EP BACU018809/1-1064 LTRQA-GNGG DGEAGGSREL PAKGARRRRG GARGRPSPAK KPRHGL--EP 251 300 ENSP00000309572/1-1132 ERTPVGQGSW AHPGRTRGPS DRGFCVVSPA RPAEEATSLE GALSGTRHSH ENSBTAP00000016685/1-1125 GRDLEGQ--- --VARSP--- ---PRVVTPT RDAAEAKSRK GDVPGPCRLF ENSTTRP00000003636/1-1124 ERGTEGQAPG AHLGRAPGRS DSDPRVMTPT RAAAEAKSQE GNVPRTRRPF bmy_05116T0/1-1129 EQGTEGQAPG AHLGRAPGRS DSDPRVMTPT GAAAEAKSRE GNVPRTRRPF BACU018809/1-1064 ERGTEGQAPG AHLGRAPGRS DSDPRVMTPT RAAAEAKSRE GNVPRTRRPF 301 350 ENSP00000309572/1-1132 PSVGRQHHAG PPSTSRPPRP WDTPCPPVYA ETKHFLYSSG DKEQLRPSFL ENSBTAP00000016685/1-1125 P--GGERGVG SAS-WRLSPS EGEPGAGACA ETKRFLYCSG GGEQLRRSFL ENSTTRP00000003636/1-1124 PLVGGEGGVR SPS-WRPSHP QGEPGPRTWA ETKQFLYCSG SKERLRRSFL bmy_05116T0/1-1129 ALVGGERGVR SPS-WRPSHP QGEPGPRAWA ETKQFLYCSG SKERLRRSFL BACU018809/1-1064 PLVGGERGVR SPS-WRPSHP QGEPGPRAWA ETKQFLYCSG SKERLRRSFL 351 400 ENSP00000309572/1-1132 LSSLRPSLTG ARRLVETIFL GSRPWMPGTP RRLPRLPQRY WQMRPLFLEL ENSBTAP00000016685/1-1125 LCSLPPSLAG ARTLVETIFL DSKPGPPGAP RRPRRLPARY WQMRPLFRKL ENSTTRP00000003636/1-1124 LCSLPPSLAG AQRLVETIFL GSKPRPPGVP RRMRRLPARY WRMRPLFREL bmy_05116T0/1-1129 LCSLPPSLGG AQRLVETIFL GSEPRPPGAP RRMRRLPARY WRMRPLFREL BACU018809/1-1064 LCSLPPSLGG AQRLVETIFL GSEPRPPGAP RRMRRLPARY WRMRPLFREL 401 450 ENSP00000309572/1-1132 LGNHAQCPYG VLLKTHCPLR AAVTPA---- -----AGVCA REKPQGSVAA ENSBTAP00000016685/1-1125 LGNHARCPYG ALLRAHCPLP ASAPRAGPDH QKCPGVGGCP SERP----AA ENSTTRP00000003636/1-1124 LENHVRCPYG ALLRAHCPLP ASTTPA---- -----VGARS GERP----AA bmy_05116T0/1-1129 LKNHVRCPYG ALLRAHCPLP ASTSPAGPGD QRSPGVGACS GESP----AA BACU018809/1-1064 LKNHVRCPYG ALLRAHCPLP ASTSPAGPGY QKSPGVGACS GESP----AA 451 500 ENSP00000309572/1-1132 PEEEDTDPRR LVQLLRQHSS P--------- -WQVYGFVRA CLRRLVPPGL ENSBTAP00000016685/1-1125 APEGEANSGR LVQLLRQHSS P--------- -WQVYGLLRA CLRRLVPAGL ENSTTRP00000003636/1-1124 TPEGDAGSRR LVQLLRQHSS P--------- -WQVYGLLRA CLRRLVPAGL bmy_05116T0/1-1129 APEGDAGSRR LVQLLRQHSS P--------- -WQVYGLLRA CLRRLVPAGL BACU018809/1-1064 APEGDAGSRR LVQLLRQHSS PWQGYGLHSS PWQVYGLLRA CLRRLVPAGL 501 550 ENSP00000309572/1-1132 WGSRHNERRF LRNTKKFISL GKHAKLSLQE LTWKMSVRDC AWLRRSPGVG ENSBTAP00000016685/1-1125 WGSRHNERRF LRNVKKLLSL GKHGRLSQQE LTWKMKVQDC AWLRASPGAR ENSTTRP00000003636/1-1124 WGSRHNERRF LRNVKKLLSL GKHGKLSPQE LTWKMKVQDC AWLRGSPGAR bmy_05116T0/1-1129 WGSRHNERRF LRNVKKLLSL GKHGKLSPQE LTWKMKVQDC AWLRGSPGAR BACU018809/1-1064 WGSRHNERRF LRNVKKLVSL GKHGKLSPQE LTWKMKVQDC AWLRGSPGAR 551 600 ENSP00000309572/1-1132 CVPAAEHRLR EEILAKFLHW LMSVYVVELL RSFFYVTETT FQKNRLFFYR ENSBTAP00000016685/1-1125 CVPAAEHRQR EAVLGRFLHW LMGAYVVELL RSFFYVTETT FQKNRLFFFR ENSTTRP00000003636/1-1124 CVPAAEHRLR EAVLARFLCW LMGAYVVEVL RAFFYVTETT FQKNRLFFFR bmy_05116T0/1-1129 CIPAAEHRLR EAVLARFLCW LMGAYVVELL RAFFYVTETT FQKNRLFFFR BACU018809/1-1064 CIPAAEHRLR EAVLARFLCW LMGAYVVELL RAFFYVTETT FQKNRLFFFR 601 650 ENSP00000309572/1-1132 KSVWSKLQSI GIRQHLKRVQ LRELSEAEVR QHREARPALL TSRLRFIPKP ENSBTAP00000016685/1-1125 KRIWSQLQRL GVRQHLDRVR LRELSEAEVR QHQEARPALL TSRLRFVPKP ENSTTRP00000003636/1-1124 KRVWSQLQSV GIRQHLERVQ LRELSEADVR RLQEDRPALP MSKLRFVPKP bmy_05116T0/1-1129 KRVWSQLQSI GIRQHLERVQ LRELSEADVR RHQEARPALP TSKLRFVPKP BACU018809/1-1064 KRVWSQLQSI GIRQHLERVQ LRELSEADVR RHQEARPALP TSKLRFVPKP 651 700 ENSP00000309572/1-1132 DGLRPIVNMD YVVGARTFRR EKRAERLTSR VKALFSVLNY ERARRPGLLG ENSBTAP00000016685/1-1125 GGLRPIVNVG CVEGAPAPPR DKKVQHLSSR VKTLFAVLNY ERARRPGLLG ENSTTRP00000003636/1-1124 SGLRPIVNMG DVVGAGRSHR DRKVQHLTSQ VKTLFAVLNY ERLRRPSLLG bmy_05116T0/1-1129 SGLRPIVNMG DVVGAGKSHR DRK------- VKTLFAVLNY ERLRRPGLLG BACU018809/1-1064 SGLRPIVNMG DVVGAGKSHR DRKVQHLTSQ VKTLFAVLNY ERLRRPGLLG 701 750 ENSP00000309572/1-1132 ASVLGLDDIH RAWRTFVLRV RAQDPPPELY FVKVDVTGAY DTIPQDRLTE ENSBTAP00000016685/1-1125 ASVLGMDDIH RAWRAFVLPL RARGPAPPLY FVKVDVVGAY DALPQDKLAE ENSTTRP00000003636/1-1124 ASVMGMDDIY RAWQAFVLPL RARGPVAPLY FVKVDVAGAY DALPQDRLAE bmy_05116T0/1-1129 ASVLGMDDIY RAWQAFVLPL RARGPVPPLY FVKVDVAGAY DALPQDRLAE BACU018809/1-1064 ASVLGMDDIY RAWQAFVLPL RAQGPVPPLY FVKVDVAGAY DALPQDRLAK 751 800 ENSP00000309572/1-1132 VIASIIKPQ- NTYCVRRYAV VQKAAHGHVR KAFKSHVSTL TDLQPYMRQF ENSBTAP00000016685/1-1125 VIANVLQPQE NTYCVRHCAM V-RTARGRMR KSFKRHVSTF SDFQPYLRQL ENSTTRP00000003636/1-1124 VIANVIRPHE NSYCVRQYAV VQRTARGHVR KSFKRHVSTF TDLQPYMRQF bmy_05116T0/1-1129 VIANVIRPHE NSYCVRQYAV VQRTARGHVR KSFKRHVSTF TDLQPYMRQF BACU018809/1-1064 VIANVIRPHE NSYCVRQYAV VQRTARGHVR KSFKRHVSTF TDLQPYMRQF 801 850 ENSP00000309572/1-1132 VAHLQETSPL RDAVVIEQSS SLNEASSGLF DVFLRFMCHH AVRIRGKSYV ENSBTAP00000016685/1-1125 VEHLQAMGSL RDAVVIEQSC SLNEPGSSLF NLFLHLIPSN YNACGNRSYI ENSTTRP00000003636/1-1124 VERLQAAGSL RDAVVIEQSC SLNEAGGSLF KLFLRLVHNH VVRIGGXXXX bmy_05116T0/1-1129 VEHLQATGLL RDAVVIEQSC SLNEAGGSLF KLFLRLVHNH VVRIGGRSYV BACU018809/1-1064 VEHLQATGLL RDAVVIEQSC SLNEAGGSLF ELFLRLVHNH VVRIGGRSYI 851 900 ENSP00000309572/1-1132 QCQGIPQGSI LSTLLCSLCY GDMENKLFAG IRRDGLLLRL VDDFLLVTPH ENSBTAP00000016685/1-1125 QCQGIPQGSI LSTLLCSFCY GDMENKLFPG VQQDGVLLRL VDDFLLVTPH ENSTTRP00000003636/1-1124 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXVLLRF VDDFLLVTPH bmy_05116T0/1-1129 QCQGVPQGSI LSTLLCSFCY GDMENELFPG IQRDGVLLRL VDDFLLVTPH BACU018809/1-1064 QCQGVPQGSI LSTLLCSFCY GDMENELFPG VQRDGVLLRL VDDFLLVTPH 901 950 ENSP00000309572/1-1132 LTHAKTFLRT LVRGVPEYGC VVNLRKTVVN FPVEDEALGG TAFVQMPAHG ENSBTAP00000016685/1-1125 LTRARDFLRT LVRGVPEYGC QVNLRKTVVN FPVEPGALGG AAPLQLPAHC ENSTTRP00000003636/1-1124 LPRAKAFLRA LVRGVPEYGC LANLQKTVVN FPVEDGGLGG AAPLQLPAHC bmy_05116T0/1-1129 LTQARAFLRT LVRGVPEYGC LANLQKTVVN FPVEDGGLGG AAPLQLPAHC BACU018809/1-1064 LTRARAFLRT LVRGVPEYGC LANLQKTVVN FPVEDGGLGG AALLQLPGHC 951 1000 ENSP00000309572/1-1132 LFPWCGLLLD TRTLEVQSDY SSYARTSIRA SLTFNRGFKA GRNMRRKLFG ENSBTAP00000016685/1-1125 LFPWCGLLLD TRTLEVHGDH SSYARTSIRA SLTFTQGFKP GRNMRRKLLA ENSTTRP00000003636/1-1124 LFPWCGLLLD TRTLEVRCDH SSYAGTSIRA SLTFNQGFKP GRNMRRKLSA bmy_05116T0/1-1129 LFPWCGLLLD TRTLEVRCDH SSYAGTSIRA SLTFNQGFKA GRNMRRKLLA BACU018809/1-1064 LFPWCGLLLD TRTLEVRGDH SSYAGTSIRA SLTFNQGFKA GRNMRRKLLA 1001 1050 ENSP00000309572/1-1132 VLRLKCHSLF LDLQVNSLQT -VCTNIYKIL LLQAYRFHAC VLQLPFHQQV ENSBTAP00000016685/1-1125 VLQLKCHGLF LDLQVNSLQT -VFTNVYKIF LLQAYRFHAC VLQLPFSQPV ENSTTRP00000003636/1-1124 VLRLKCQGLF LDLQXXXXXX -XXXXXXXXX XXXXXXFHAC VLQLPFNQPV bmy_05116T0/1-1129 VLRLKCHGLF LDLQVNSLET -VFTNVYKIF LLQAYRFHAC VLQLPFHQPV BACU018809/1-1064 VLRLKCHGLF LDLQVCGLPM GGWGCRAQRA AGITWGFHAC VLQLPFQQPV 1051 1100 ENSP00000309572/1-1132 WKNPTFFLRV ISDTASLCYS ILKAKNAGMS LGAKGAAGPL PSEAVQWLCH ENSBTAP00000016685/1-1125 RSSPAFFLQV IADTASRGYA LLKARNAGAS LGARGAAGLF PSEAAQWLCL ENSTTRP00000003636/1-1124 GRNPSFFLRV ISDTSSRCHA LLRARNAXXX XXXXXXXXXX XXXXXXXXXX bmy_05116T0/1-1129 RRNPSFFLRV ISDTSSRCYA LVRARNAGMS LGAKGASGPF PSEAAQWLCL BACU018809/1-1064 RRNPSFFLRV ISDTSSRCYA LLRARNAGMS LGAKGASGPF PSEAAQWLCL 1101 1150 ENSP00000309572/1-1132 QAFLLKLTRH RVTYVPLLGS LRTAQTQLSR KLPGTTLTAL EAAANPALPS ENSBTAP00000016685/1-1125 HAFLLKLAHH RVTYSRLLGA LRTAQARLHR QLPGPTRAAL EAAADPALTA ENSTTRP00000003636/1-1124 XXXXXXXXXX XXXXXXXXXX XXXXRARLCR RLPRATLAAL EAAADPALTA bmy_05116T0/1-1129 HAFLLKLARH RVTYSCLLGA LRSARAQLCR RLPGATLAAL EAAADPALTA BACU018809/1-1064 HAFLLKLARH RVTYSCLLGA LRSARARLCR RLPRATLAAL EAAADPALTA 1151 1200 ENSP00000309572/1-1132 DFKTILD ENSBTAP00000016685/1-1125 DFKTILD ENSTTRP00000003636/1-1124 DFKTILD bmy_05116T0/1-1129 DFKTILD BACU018809/1-1064 DFKTILD