KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 4 Type: P Thu May 15 16:59:35 2014 Check: 00 .. Name: ENSP00000374501/1-709 Len: 718 Check: 3874 Weight: 1.00 Name: ENSTTRP00000009105/1-434 Len: 718 Check: 4346 Weight: 1.00 Name: bmy_12253T0/1-677 Len: 718 Check: 6071 Weight: 1.00 Name: ENSBTAP00000016697/1-685 Len: 718 Check: 83 Weight: 1.00 // 1 50 ENSP00000374501/1-709 MDQKLSKLVE ELTTSGEPRL NPEKMKELKK ICKSSEEQLS RAYRLLIAQL ENSTTRP00000009105/1-434 MDQKLSELVE ELTTSGEPQV NPEKMKELKK ICKSSEEQLG RTYHLLMAQL bmy_12253T0/1-677 MDQKLSELVE ELTTSGEPQV NTKKMKELKK ICKSSEEQLG HTYHLLMAQL ENSBTAP00000016697/1-685 MDQKLSELVE ELTTSGEPQL NPEKMKQLKK ICKSSEEQLG HAYHLLMAQL 51 100 ENSP00000374501/1-709 TQEHAEIRLS AFQIVEELFV RSHQFRMLVV SNFQEFLELT LGTDPAQPLP ENSTTRP00000009105/1-434 SQEHAEVRLS AFQVL-QLFA RSH-FQMLVV SNFQEFLELT LGTDHERPLP bmy_12253T0/1-677 SQEHAEVRLS AFQVLDQLFA RSHHFRMLVV SNFQEFLELT LGTDHERPLP ENSBTAP00000016697/1-685 SQEHAEIRLS AFQVLDQLFA RSHQFRTLVV SNFQEFLELT LGTDHERPLP 101 150 ENSP00000374501/1-709 PPREAAQRLR QATTRAVEGW NEKFGEAYKK LALGYHFLRH NKKVDFQDTN ENSTTRP00000009105/1-434 PPREVAQKLR QAATRAIRGW NEKYGTAYKK LALGFHFLTH NKQVDFQDVG bmy_12253T0/1-677 PPREVAQKLR RAATRAIRGW NEKYGTAYKK LALGFHFLTH SKQVDFQDVD ENSBTAP00000016697/1-685 PPREVAQRLR QAATQAIRGW NEKYGAAYKK LALGFHFLKH SKQVDFQDVD 151 200 ENSP00000374501/1-709 ARSLAERKRE EEKQKHLDKI YQERASQAER EMQEMSGEIE SCLTEVESCF ENSTTRP00000009105/1-434 ARTLAERKRA EEKQKRLHRI YKERSEQAAR EMEEMSGEIR SCLMELESCF bmy_12253T0/1-677 ARTLAERKRA EEKQKRLDRI YKERSEQAVR EMEEMSGEIQ SCLMELESCF ENSBTAP00000016697/1-685 ARTVAERKRA EERQKRLDRI YKERSEWAAR EMEEMSTEIR GCLTELESCF 201 250 ENSP00000374501/1-709 RLLVPFDFDP NPETESLGMA SGMSDALRSS CAGQVGPCRS GTPDPRDGEQ ENSTTRP00000009105/1-434 RLLVPFDLDP TPGAPG-AMA E--------- ---------- --EGGRDEEQ bmy_12253T0/1-677 RLLVPFDLDP TPGAASPAMA E--------- ---------- --EGGRDEEQ ENSBTAP00000016697/1-685 RLLLPFDLDL APGAAWCPVP E--------- ---------- --KGDRDEEQ 251 300 ENSP00000374501/1-709 PCCSRDLPAS AGHPRAGGGA QPSQTATGDP S-DEDEDSDL EEFVRSHGLG ENSTTRP00000009105/1-434 PCCSKTLAAC TRRPGAAG-- ------AGPA G-DRDEDSDP EGFVRRHGLG bmy_12253T0/1-677 PCCSKTLAIC ARRPGAAG-- -----AEGPP SEDKDEDSDP EGFVRHHGLG ENSBTAP00000016697/1-685 PCCSKSLAAC AHHPGAMD-- -----AGGPP S--EDEDRDP DGFVRRHGLG 301 350 ENSP00000374501/1-709 SHKYTLDVEL CSEGLKVQEN EDNLALIHAA RDTLKLIRNK FLPAVCSWIQ ENSTTRP00000009105/1-434 SREYTLEVEL SSXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX bmy_12253T0/1-677 SREYTLEVEL SSDSLKVHED EDNLVVIHVA QDTLRLIQNR FLPAVCSWVQ ENSBTAP00000016697/1-685 SRQYTLDVEL SSDSLRVREN EDNSAVIRAA RDALRLIQNK LLPAACSWVQ 351 400 ENSP00000374501/1-709 RFTRVGTHGG CLKRAIDLKA ELELVLRKYK ELDIEPEGGE RRRTEALGDA ENSTTRP00000009105/1-434 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXAAAPR-- bmy_12253T0/1-677 LFTRAGTHGG HLEGAIDLKA ELETALRRSR ELDVMPEEGC RREAAAPGDR ENSBTAP00000016697/1-685 LFTRAGTYGG HLEGAIHLKA ELEAALKRSR ELDIVPEEGR SGETAAPG-- 401 450 ENSP00000374501/1-709 EEDEDDEDFV EVPEKEGYEP HIPDHLRPEY -GLEAAPEKD ------TVVR ENSTTRP00000009105/1-434 DEDEDDEDFV EVPEKEGYEA CVPEHLQPEC ARPEKDPA-- ------TPAS bmy_12253T0/1-677 DEDEDDEDFV EVPEKEGYEA CIPERLQPEC -ELKKDPA-- ------TLAS ENSBTAP00000016697/1-685 DEDEDEDDFV EVPEKEGYEA CVPEHLRPEC GEQRHGPGRG LEEGLAAPGS 451 500 ENSP00000374501/1-709 CLRTRTRMDE EVSDPTSAAA QLRQLRDHLP PPSSASPSRA LPEPQEAQKL ENSTTRP00000009105/1-434 HARKRTRSSE EACDPTSAAA QLHWLQR--- ---------- ---------- bmy_12253T0/1-677 QARKRTGSSE EACDPTSAAA QLHWLQRHLP PALPPSP-RV PLGPEEAEKL ENSBTAP00000016697/1-685 QARKRPGSDM EAFDPTSAAA QQQWPRPHGP PASPPSP-RA PLAPEQAAWR 501 550 ENSP00000374501/1-709 AAERARAPVV PYGVDLHYWG QELPTAGKIV KSDSQHRFWK PSEVEEEVVN ENSTTRP00000009105/1-434 ---------- ---------- ---------- ---------- ---------- bmy_12253T0/1-677 AAERARAPVV PFGVDLCYWG REEPMAGKIL KSDSEHRFWK PREVDAEVES ENSBTAP00000016697/1-685 AAEQARAPVV PFGVDLCYWG QEELMAGKIL KCDSEHRFWK PCEVDAEVES 551 600 ENSP00000374501/1-709 ADISEMLRSR HITFAGKFEP VQHWCRAPRP DGRLCERQDR LKCPFHGKIV ENSTTRP00000009105/1-434 ---------- ---------- ---------- ---------- ---------- bmy_12253T0/1-677 ATVSESLRSR QITFAGRFEP VQHRCRAPRP DGRLCERQDR LKCPFHGKII ENSBTAP00000016697/1-685 ASVSEALRSR RITFAGQFEP VQHRCRAPRP DGQLCARQDR LKCPFHGKII 601 650 ENSP00000374501/1-709 PRDDEGRPLD PEDRAREQRR QLQKQE-RPE WQDPELMRDV EAATGQDLGS ENSTTRP00000009105/1-434 ---------- ---------- ---------- ---------- ---------- bmy_12253T0/1-677 PRDDTGRPLH PEDRAREQKQ RLQRPAGCRA WQDPELMRDV EAATGVDLGS ENSBTAP00000016697/1-685 PRDDAGRPLN AEDRAREQRQ QLQRPAGRPD WQDPEFLRDV EAATGVDLGS 651 700 ENSP00000374501/1-709 SRYSGKGRGK KRRYPSLTNL KAQADTARAR IGRKVFAKAA VRRVVAAMNR ENSTTRP00000009105/1-434 ---------- ---------- ---------- ---------- ---------- bmy_12253T0/1-677 SRPGGKGR-- -RRRSGLTDL KRQADTARAR IAKKVFAKAA VQRVVTAMNQ ENSBTAP00000016697/1-685 SRPGGKGKGK RRKHSGLTDL KRQADTARAR IAKKVFAKAA VQRVVTAMNQ 701 750 ENSP00000374501/1-709 MDQKKHEKFS NQFNYALN ENSTTRP00000009105/1-434 ---------- -------- bmy_12253T0/1-677 MDRKKHEKFA NQFNYALH ENSBTAP00000016697/1-685 MDEKKHEKFA NQFNYALN