KEY:
ENSP* - Homo sapiens (Human)
ENSBTA* - Bos taurus (Cow)
ENSTTR* - Tursiops truncatus (Dolphin)
bmy_* - Balaena mysticetus (Bowhead whale)
BACU* - Balaenoptera acutorostrata (Minke whale)
Copy from below the line for a valid .msf file.
----------------------------------------------------------------------------------
NoName MSF: 5 Type: P Thu May 15 16:59:35 2014 Check: 00 ..
Name: ENSP00000377971/1-615 Len: 638 Check: 3791 Weight: 1.00
Name: ENSBTAP00000016715/1-598 Len: 638 Check: 6129 Weight: 1.00
Name: ENSTTRP00000002938/1-603 Len: 638 Check: 1707 Weight: 1.00
Name: bmy_02587T0/1-357 Len: 638 Check: 1344 Weight: 1.00
Name: BACU016693/1-614 Len: 638 Check: 8505 Weight: 1.00
//
1 50
ENSP00000377971/1-615 MCSEARLARR LRDALREEEP WAVEELLRCG ADPNLVLEDG AAAVHLAAGA
ENSBTAP00000016715/1-598 MGPAVGLARR LRTALQEEEL RSVEELLRRG ADPNLVLEDG AAAMHLAARA
ENSTTRP00000002938/1-603 MGSATVLARR LQAALRKEEL RAVEELLRRG ADPNLVLEDG AAAMHLAARA
bmy_02587T0/1-357 MGSATGLARR LRAALREEEL RAVEELLRRG ADPNLVLEDG AAAMHLAARA
BACU016693/1-614 MGSATGLARR LRAALREEEL RAVEELLRRG ADPNLVLEDG AAAMHLAARA
51 100
ENSP00000377971/1-615 RHPRGLRCLG ALLRQGGDPN ARSVEALTPL HVAAAWGCRR GLELLLSQGA
ENSBTAP00000016715/1-598 QHLRSLCCLE ALLRRGGDPN ARSAEALTPL HVAAAWGCRR GLELLLSQGA
ENSTTRP00000002938/1-603 QRPRSLCCLE ALLRRGGDPN TRSAEALTPL HVAAAWGCRR GLELLLSQGA
bmy_02587T0/1-357 QHPRSLCCLE ALLRRGGDPN TR-------- ---------- ----------
BACU016693/1-614 QHPRSLCCLE ALLRRGGDPN TRSAEALTPL HVAAAWGCRR GLELLLSQGA
101 150
ENSP00000377971/1-615 DPALRDQDGL RPLDLALQQG HLECARVLQD LDTRTR--TR TRIGAETQEP
ENSBTAP00000016715/1-598 DPALRDQDGF LPLDLAEQQG HQNCARLLRE LEARTRTPTR TWKGSRKPEP
ENSTTRP00000002938/1-603 DPALRDQDGL RPVDLAEQQG HQNCVRVLRE LEARTRTPTR TRADPQEPEP
bmy_02587T0/1-357 ---------- ---------- ---------- ---------- ----------
BACU016693/1-614 DPALGDQDGL RPLDLAEQQG HQNCVRVLRE LEARTRTPTR TRADPQEPEP
151 200
ENSP00000377971/1-615 EPAPGTPG-- -------LSG PTDETLDSIA LQKQPCRGDN RDIGLEADPG
ENSBTAP00000016715/1-598 EPEPG----- -------ASG PPHVMLNSTT LG----TGDG KDVSLEAGPG
ENSTTRP00000002938/1-603 EPKPGTPG-- -------PSG PPSVTLDSTT LG----RGDD KDMSLEAGPG
bmy_02587T0/1-357 ---------- ---------- ---VTLDSTT LG----RGDG KDMSLEAGPG
BACU016693/1-614 EPKPGSPGPW GKGLNTSPSG PPSVTLDSTT LG----RGDG KDMSLEAGPG
201 250
ENSP00000377971/1-615 PPSLPVPLET VDKHGSSASP PGHWDYSSDA SFVTAVEVSG AEDPASDTPP
ENSBTAP00000016715/1-598 PPGLLAHPET ADTDGGLESP LGRWDCSSVT SFVTAVEASG AEDLTGHTSP
ENSTTRP00000002938/1-603 PPSLLAHPEI AGTDGSLESP LGCWDCSSVA SFVTAVEASG AEDPTAHMSP
bmy_02587T0/1-357 PPSLLAHPEI ADTDGSLESP LGRWDCSSVT SFVTAVEASG AEDPTAHTSP
BACU016693/1-614 PPSLLAHPEI ADTDGSLESP LGRWDCSSVA SFVTAVEASG AEDPTAHTSP
251 300
ENSP00000377971/1-615 WAGSLPPTRQ GLLHVVHANQ RVPRSQGT-- ---------- EAELNARLQA
ENSBTAP00000016715/1-598 WAGVRLSQ-- ---------- RVPRSLGTLQ LAHQPLMEDR EAELNAHLQA
ENSTTRP00000002938/1-603 WAG-RPSQRV PL-------- RVPHSTSSPQ --------DR EAELNARLQA
bmy_02587T0/1-357 WAGVRPSQ-- ---------- KVPRSSGTPQ QEHRALVEDR EAELNARLQA
BACU016693/1-614 WAGVRPSQ-- ---------- KVPRSSGTPQ QEHRALVEGR EAELNARLQA
301 350
ENSP00000377971/1-615 LTLTPPNAAG FQSSPSSMPL LDRSPAHSPP RTPTPGASDC HCLWEHQTSI
ENSBTAP00000016715/1-598 LTLTLPDD-- ---SPSPKFF PDRSPTHSPP RELLPGPSDT HITREDQLSP
ENSTTRP00000002938/1-603 LTLTLPDA-- ---SPSPKFF PERSPAHSAP WEPLPGPSDL HIPKDDQLSL
bmy_02587T0/1-357 LTLTLPDA-- ---SPSPKFF PDRSPAHSAP WEPLPGPSDF HIPKDDQLSL
BACU016693/1-614 LTLTLPDA-- ---SPSPKFF PDRSPAHSAP WEPLPGPSDF HIPKDDQLSL
351 400
ENSP00000377971/1-615 DSDMATLWLT EDEASSTGGR EPVGPCRHLP VSTVSDLELL KGLRALGENP
ENSBTAP00000016715/1-598 DGDLAALWLT EDEASATVGR DPSPSDQCPP DPTMSDLELL QGLRALGKSP
ENSTTRP00000002938/1-603 DSDVAALWLT EDEASATGGR DPITSCQCPP DPTTSDLELL QGLRALGKSR
bmy_02587T0/1-357 DSDVAALWLT EDEASATGGR DPIPSCQCPP DPTMSDLELL QGLRALGKSR
BACU016693/1-614 DSDVATLWLT EDEASATGGR DPIPSCQCPP DPTMSDLELL QGLRALGKSR
401 450
ENSP00000377971/1-615 HPITPFTRQL YHQQLEEAQI APGPEFSGHS LELAAALRTG CIPDVQADED
ENSBTAP00000016715/1-598 GPITSFTRPR YLRRLKEAQA APSPDFSGHS PELAEALRTG RIPDAQADED
ENSTTRP00000002938/1-603 GPITSFTRPY YLQPLEEAQA ARGLEFSGHS PELAKALRTG RIPDAQADED
bmy_02587T0/1-357 GTITSFTRPY YLRPLEEAQA AP-------- ---------- ----------
BACU016693/1-614 GTITSFTRPY YLRPLEEAQA APGPEFSGHS PELAKALRTG RIPDAQADED
451 500
ENSP00000377971/1-615 ALAQQFEQPD PARRWREGVV KSSFTYLLLD PRETQDLPAR AFSLTPAERL
ENSBTAP00000016715/1-598 ALAQQFERPD PTRRWREGVV KSSFTYLLLD PRKTQDLPAR AFSMTLAECL
ENSTTRP00000002938/1-603 ALAKQFEQPE PTRRWREGVM KSSFTYLLLD PRKTQNLPAR AFSLTLAECL
bmy_02587T0/1-357 ---------- ---------- ---------- ---------- ----------
BACU016693/1-614 ALAKQFERPE PTRRWREGVM KSSFTYLLLD PRKTQNLPAR ASSLTLAECL
501 550
ENSP00000377971/1-615 QTFIRAIFYV GKGTRARPYV HLWEALGHHG RSRKQPHQAC PKVRQILDIW
ENSBTAP00000016715/1-598 RIFVQAIFYV GKGTRARPDV HLWEALSHRR RPGK---QAC PKVRRILDIW
ENSTTRP00000002938/1-603 RIFVHAIFYV GKGTRTRPNV HLWKALSHRG WPGKQPPQAC PKVRQILDIW
bmy_02587T0/1-357 ---------- ---------- ---------- ---------- ----------
BACU016693/1-614 RIFVHAIFYV GKGTRARPNV HLWKALSHRG WPGK---QAC PKVRQILDIW
551 600
ENSP00000377971/1-615 ASGCGVVSLH CFQHVVAVEA YTREACIVEA LGIQTLTNQK QGHCYGVVAG
ENSBTAP00000016715/1-598 ATGRGIVSLH CFQHVVPAEA YTREACLVDA LGIQMLTNQK QGHCYGVVAD
ENSTTRP00000002938/1-603 ASGRGVVSLH CFQHVVAVEA YTREACLVDA LXXXXXXXXX XXXXXXXXXX
bmy_02587T0/1-357 ---------- ---------- ---------- -GIQTLTNQK QGHCYGVVAG
BACU016693/1-614 ASGRGVVSLH CFQHVVAVEA YTREACLVDA LGIQTLTNQK QGHCYGVVAG
601 650
ENSP00000377971/1-615 WPPARRRRLG VHLLHRALLV FLAEGERQLH PQDIQARG
ENSBTAP00000016715/1-598 WSPTRRRRLG VHLLHRALLV FLAEGERELR PQDI----
ENSTTRP00000002938/1-603 XXXXXXXXXX XXXXXXXXXX FLAEGERELW PQDIQARG
bmy_02587T0/1-357 WPPTRRRRLG VHLLHRALLV FLAEGERELW PQDIQARG
BACU016693/1-614 WPPTRRRRLG VHLLHRALLV FLAEGERELR PQDIQARG