KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 16:59:35 2014 Check: 00 .. Name: ENSP00000377971/1-615 Len: 638 Check: 3791 Weight: 1.00 Name: ENSBTAP00000016715/1-598 Len: 638 Check: 6129 Weight: 1.00 Name: ENSTTRP00000002938/1-603 Len: 638 Check: 1707 Weight: 1.00 Name: bmy_02587T0/1-357 Len: 638 Check: 1344 Weight: 1.00 Name: BACU016693/1-614 Len: 638 Check: 8505 Weight: 1.00 // 1 50 ENSP00000377971/1-615 MCSEARLARR LRDALREEEP WAVEELLRCG ADPNLVLEDG AAAVHLAAGA ENSBTAP00000016715/1-598 MGPAVGLARR LRTALQEEEL RSVEELLRRG ADPNLVLEDG AAAMHLAARA ENSTTRP00000002938/1-603 MGSATVLARR LQAALRKEEL RAVEELLRRG ADPNLVLEDG AAAMHLAARA bmy_02587T0/1-357 MGSATGLARR LRAALREEEL RAVEELLRRG ADPNLVLEDG AAAMHLAARA BACU016693/1-614 MGSATGLARR LRAALREEEL RAVEELLRRG ADPNLVLEDG AAAMHLAARA 51 100 ENSP00000377971/1-615 RHPRGLRCLG ALLRQGGDPN ARSVEALTPL HVAAAWGCRR GLELLLSQGA ENSBTAP00000016715/1-598 QHLRSLCCLE ALLRRGGDPN ARSAEALTPL HVAAAWGCRR GLELLLSQGA ENSTTRP00000002938/1-603 QRPRSLCCLE ALLRRGGDPN TRSAEALTPL HVAAAWGCRR GLELLLSQGA bmy_02587T0/1-357 QHPRSLCCLE ALLRRGGDPN TR-------- ---------- ---------- BACU016693/1-614 QHPRSLCCLE ALLRRGGDPN TRSAEALTPL HVAAAWGCRR GLELLLSQGA 101 150 ENSP00000377971/1-615 DPALRDQDGL RPLDLALQQG HLECARVLQD LDTRTR--TR TRIGAETQEP ENSBTAP00000016715/1-598 DPALRDQDGF LPLDLAEQQG HQNCARLLRE LEARTRTPTR TWKGSRKPEP ENSTTRP00000002938/1-603 DPALRDQDGL RPVDLAEQQG HQNCVRVLRE LEARTRTPTR TRADPQEPEP bmy_02587T0/1-357 ---------- ---------- ---------- ---------- ---------- BACU016693/1-614 DPALGDQDGL RPLDLAEQQG HQNCVRVLRE LEARTRTPTR TRADPQEPEP 151 200 ENSP00000377971/1-615 EPAPGTPG-- -------LSG PTDETLDSIA LQKQPCRGDN RDIGLEADPG ENSBTAP00000016715/1-598 EPEPG----- -------ASG PPHVMLNSTT LG----TGDG KDVSLEAGPG ENSTTRP00000002938/1-603 EPKPGTPG-- -------PSG PPSVTLDSTT LG----RGDD KDMSLEAGPG bmy_02587T0/1-357 ---------- ---------- ---VTLDSTT LG----RGDG KDMSLEAGPG BACU016693/1-614 EPKPGSPGPW GKGLNTSPSG PPSVTLDSTT LG----RGDG KDMSLEAGPG 201 250 ENSP00000377971/1-615 PPSLPVPLET VDKHGSSASP PGHWDYSSDA SFVTAVEVSG AEDPASDTPP ENSBTAP00000016715/1-598 PPGLLAHPET ADTDGGLESP LGRWDCSSVT SFVTAVEASG AEDLTGHTSP ENSTTRP00000002938/1-603 PPSLLAHPEI AGTDGSLESP LGCWDCSSVA SFVTAVEASG AEDPTAHMSP bmy_02587T0/1-357 PPSLLAHPEI ADTDGSLESP LGRWDCSSVT SFVTAVEASG AEDPTAHTSP BACU016693/1-614 PPSLLAHPEI ADTDGSLESP LGRWDCSSVA SFVTAVEASG AEDPTAHTSP 251 300 ENSP00000377971/1-615 WAGSLPPTRQ GLLHVVHANQ RVPRSQGT-- ---------- EAELNARLQA ENSBTAP00000016715/1-598 WAGVRLSQ-- ---------- RVPRSLGTLQ LAHQPLMEDR EAELNAHLQA ENSTTRP00000002938/1-603 WAG-RPSQRV PL-------- RVPHSTSSPQ --------DR EAELNARLQA bmy_02587T0/1-357 WAGVRPSQ-- ---------- KVPRSSGTPQ QEHRALVEDR EAELNARLQA BACU016693/1-614 WAGVRPSQ-- ---------- KVPRSSGTPQ QEHRALVEGR EAELNARLQA 301 350 ENSP00000377971/1-615 LTLTPPNAAG FQSSPSSMPL LDRSPAHSPP RTPTPGASDC HCLWEHQTSI ENSBTAP00000016715/1-598 LTLTLPDD-- ---SPSPKFF PDRSPTHSPP RELLPGPSDT HITREDQLSP ENSTTRP00000002938/1-603 LTLTLPDA-- ---SPSPKFF PERSPAHSAP WEPLPGPSDL HIPKDDQLSL bmy_02587T0/1-357 LTLTLPDA-- ---SPSPKFF PDRSPAHSAP WEPLPGPSDF HIPKDDQLSL BACU016693/1-614 LTLTLPDA-- ---SPSPKFF PDRSPAHSAP WEPLPGPSDF HIPKDDQLSL 351 400 ENSP00000377971/1-615 DSDMATLWLT EDEASSTGGR EPVGPCRHLP VSTVSDLELL KGLRALGENP ENSBTAP00000016715/1-598 DGDLAALWLT EDEASATVGR DPSPSDQCPP DPTMSDLELL QGLRALGKSP ENSTTRP00000002938/1-603 DSDVAALWLT EDEASATGGR DPITSCQCPP DPTTSDLELL QGLRALGKSR bmy_02587T0/1-357 DSDVAALWLT EDEASATGGR DPIPSCQCPP DPTMSDLELL QGLRALGKSR BACU016693/1-614 DSDVATLWLT EDEASATGGR DPIPSCQCPP DPTMSDLELL QGLRALGKSR 401 450 ENSP00000377971/1-615 HPITPFTRQL YHQQLEEAQI APGPEFSGHS LELAAALRTG CIPDVQADED ENSBTAP00000016715/1-598 GPITSFTRPR YLRRLKEAQA APSPDFSGHS PELAEALRTG RIPDAQADED ENSTTRP00000002938/1-603 GPITSFTRPY YLQPLEEAQA ARGLEFSGHS PELAKALRTG RIPDAQADED bmy_02587T0/1-357 GTITSFTRPY YLRPLEEAQA AP-------- ---------- ---------- BACU016693/1-614 GTITSFTRPY YLRPLEEAQA APGPEFSGHS PELAKALRTG RIPDAQADED 451 500 ENSP00000377971/1-615 ALAQQFEQPD PARRWREGVV KSSFTYLLLD PRETQDLPAR AFSLTPAERL ENSBTAP00000016715/1-598 ALAQQFERPD PTRRWREGVV KSSFTYLLLD PRKTQDLPAR AFSMTLAECL ENSTTRP00000002938/1-603 ALAKQFEQPE PTRRWREGVM KSSFTYLLLD PRKTQNLPAR AFSLTLAECL bmy_02587T0/1-357 ---------- ---------- ---------- ---------- ---------- BACU016693/1-614 ALAKQFERPE PTRRWREGVM KSSFTYLLLD PRKTQNLPAR ASSLTLAECL 501 550 ENSP00000377971/1-615 QTFIRAIFYV GKGTRARPYV HLWEALGHHG RSRKQPHQAC PKVRQILDIW ENSBTAP00000016715/1-598 RIFVQAIFYV GKGTRARPDV HLWEALSHRR RPGK---QAC PKVRRILDIW ENSTTRP00000002938/1-603 RIFVHAIFYV GKGTRTRPNV HLWKALSHRG WPGKQPPQAC PKVRQILDIW bmy_02587T0/1-357 ---------- ---------- ---------- ---------- ---------- BACU016693/1-614 RIFVHAIFYV GKGTRARPNV HLWKALSHRG WPGK---QAC PKVRQILDIW 551 600 ENSP00000377971/1-615 ASGCGVVSLH CFQHVVAVEA YTREACIVEA LGIQTLTNQK QGHCYGVVAG ENSBTAP00000016715/1-598 ATGRGIVSLH CFQHVVPAEA YTREACLVDA LGIQMLTNQK QGHCYGVVAD ENSTTRP00000002938/1-603 ASGRGVVSLH CFQHVVAVEA YTREACLVDA LXXXXXXXXX XXXXXXXXXX bmy_02587T0/1-357 ---------- ---------- ---------- -GIQTLTNQK QGHCYGVVAG BACU016693/1-614 ASGRGVVSLH CFQHVVAVEA YTREACLVDA LGIQTLTNQK QGHCYGVVAG 601 650 ENSP00000377971/1-615 WPPARRRRLG VHLLHRALLV FLAEGERQLH PQDIQARG ENSBTAP00000016715/1-598 WSPTRRRRLG VHLLHRALLV FLAEGERELR PQDI---- ENSTTRP00000002938/1-603 XXXXXXXXXX XXXXXXXXXX FLAEGERELW PQDIQARG bmy_02587T0/1-357 WPPTRRRRLG VHLLHRALLV FLAEGERELW PQDIQARG BACU016693/1-614 WPPTRRRRLG VHLLHRALLV FLAEGERELR PQDIQARG