KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 16:59:36 2014 Check: 00 .. Name: ENSTTRP00000009088/1-181 Len: 257 Check: 8228 Weight: 1.00 Name: ENSP00000330426/1-252 Len: 257 Check: 6125 Weight: 1.00 Name: ENSBTAP00000016731/1-251 Len: 257 Check: 8983 Weight: 1.00 Name: bmy_01902T0/1-242 Len: 257 Check: 5733 Weight: 1.00 Name: BACU009237/1-115 Len: 257 Check: 2650 Weight: 1.00 // 1 50 ENSTTRP00000009088/1-181 ---------- -MLPAGAWPG LGPACWLCMH CSCP-WP--- PGPHTRMSN- ENSP00000330426/1-252 MAAPALLLLA LLLPVGAWPG L--PRRPCVH CCRPAWP--- PGPYARVSDR ENSBTAP00000016731/1-251 MVAPALLLL- LALPAGAWRG LGLPRRPCVQ CCHPAWPPAA PGPGAHVSD- bmy_01902T0/1-242 MAASALLLL- LVLPAGVWPG LGLPCWLCMH CSCPPWRPAA PSPHVRMSD- BACU009237/1-115 ---------- ---------- ---------- ---------- ---------- 51 100 ENSTTRP00000009088/1-181 ----RDEWVG LPHVRPTIDI SILKGEKGKV GVRGRSSRSR KEGPPGSWSL ENSP00000330426/1-252 DLWRGDLWRG LPRVRPTIDI EILKGEKGEA GVRGRAGRSG KEGPPGARGL ENSBTAP00000016731/1-251 ----GDAWAG LPRLRPTIDI SILKGEKGEA GVRGRSGRSG KEGPPGSRGL bmy_01902T0/1-242 ----GDEWVG LPHVRPTIDI SILK------ ---GHSSKSR KEGPPSSRGL BACU009237/1-115 ---------- ---------- ---------- ---------- ---------- 101 150 ENSTTRP00000009088/1-181 RGHKGQKGQV GPPGTLCQRA YVTFSVGWRE GLHSTDALQA VPFDTELVDL ENSP00000330426/1-252 QGRRGQKGQV GPPGAACRRA YAAFSVGRRE GLHSSDHFQA VPFDTELVNL ENSBTAP00000016731/1-251 RGRKGQKGQA GLPGAQCPRA YAAFSVGRRE GLHSADALQA VTFDTELVNL bmy_01902T0/1-242 RGHKGQKGQV GPPGTLCQRA YVAFSVGRRE GLHSTDALQA VPFDTELVNL BACU009237/1-115 ---------- ---------- ---------- ---------- --FDTELVNL 151 200 ENSTTRP00000009088/1-181 DGAFDLASGP FLFAVPGVYV LSLNVHTWNY KETYLRITCN WWAAAVLYAH ENSP00000330426/1-252 DGAFDLAAGR FLCTVPGVYF LSLNVHTWNY KETYLHIMLN RRPAAVLYAQ ENSBTAP00000016731/1-251 DGAFDLASGR FFCTAPGVYF LSLNVHTWNY KETYLHIMRN ARAAAVLYAQ bmy_01902T0/1-242 DGAFDLASGR FLCAVPGVYF LSLNVHTWNY KETYLHIMCN RRAAAALYAQ BACU009237/1-115 DGAFDLASGR FLCAVPGVYF LSLNVHTWNY KETYLHIMCN RRAAAVLYAQ 201 250 ENSTTRP00000009088/1-181 P--------- ---------- ---------- ---------- ---------- ENSP00000330426/1-252 PSERSVMQAQ SLMLLLAAGD AVWVRMFQRD RDNAIYGEHG DLYITFSGHL ENSBTAP00000016731/1-251 PSERSVMQAQ SLLLPLAAGD AVWVRMFQRD RDNAIFGESG DLYITFSGHL bmy_01902T0/1-242 PSERSVLQTQ SLLLPLAAGD AVWVRMFQRD GDNAIYSERG DLYITFSGHL BACU009237/1-115 PSERSMMQTQ SLLLPLAAGD AVWVRMFQRD GDNAIYSERG DLYITFSGHL 251 300 ENSTTRP00000009088/1-181 ------- ENSP00000330426/1-252 VKPAAEL ENSBTAP00000016731/1-251 VKPDAEL bmy_01902T0/1-242 VKPDAEL BACU009237/1-115 VKPDAEL