KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 16:59:36 2014 Check: 00 .. Name: bmy_06046T0/1-222 Len: 384 Check: 3059 Weight: 1.00 Name: BACU003005/1-383 Len: 384 Check: 8588 Weight: 1.00 Name: ENSTTRP00000010340/1-334 Len: 384 Check: 3444 Weight: 1.00 Name: ENSBTAP00000016736/1-327 Len: 384 Check: 7357 Weight: 1.00 Name: ENSP00000366628/1-335 Len: 384 Check: 4996 Weight: 1.00 // 1 50 bmy_06046T0/1-222 MDQALLSGGE DPLVVFPS-- ---------- ----GATPHQ RSVGRGHC-- BACU003005/1-383 MRDCAVQCGT MARRPQPQGT GLLYALSLRE AAFRGLAPGV TSPIKIAVQR ENSTTRP00000010340/1-334 ---------- MPPPAPPT-- ---------- ----ELVPSE RAVVLLSC-- ENSBTAP00000016736/1-327 ---------- MPLPVPPT-- ---------- ----ELVPSE RAVVLLSC-- ENSP00000366628/1-335 ---------- MQPSPPPT-- ---------- ----ELVPSE RAVVLLSC-- 51 100 bmy_06046T0/1-222 LLHA------ -------WES TVLLA----Y PASRSPR--- ---------- BACU003005/1-383 FLSSKSPTYE RVPFREHICS GLLVATDGLW PDLRSRARRL LLFLSLADLL ENSTTRP00000010340/1-334 ALSA------ -------LGS GLLVATHALW PDLRSRARRL LLFLSLADLL ENSBTAP00000016736/1-327 VLSA------ -------LGS GLLMATHALW PDLRSQARRL LLFLSLADLL ENSP00000366628/1-335 ALSA------ -------LGS GLLVATHALW PDLRSRARRL LLFLSLADLL 101 150 bmy_06046T0/1-222 ---------- -----PRWLC REPG-LTSPP PVCSLF---- ---------- BACU003005/1-383 SAASYFYGVL QDFEGPSWDC VLQGALSTFA NTSSFFWTVA IALYLYLSIV ENSTTRP00000010340/1-334 SAASYFYGVL QDFEGPSWDC VLQGALSTFA NTSSFFWTVA IALYLYLSIV ENSBTAP00000016736/1-327 SAASYFYGVL QDFKDSSWDC VLQGALSTFA NTSSFFWTVA IALYLYLSIV ENSP00000366628/1-335 SAASYFYGVL QNFAGPSWDC VLQGALSTFA NTSSFFWTVA IALYLYLSIV 151 200 bmy_06046T0/1-222 ---------- -------LSW GVPLVITVAA VTLKKIGYDA SDVSVGWCWI BACU003005/1-383 RTSRGPGDGR LLCAFHVVSW GVPLVITVAA VTLKKIGYDA SDVSVGWCWI ENSTTRP00000010340/1-334 RTSRGPGDGR LLWAFHVVSW GIPLVITVAA VTLRKIGYDA SDVSVGWCWI ENSBTAP00000016736/1-327 RTAHGSETGR LLWAFHVISW GVPLAITVAA VALKKIGYDA SDVSVGWCWI ENSP00000366628/1-335 RAARGPRTDR LLWAFHVVSW GVPLVITVAA VALKKIGYDA SDVSVGWCWI 201 250 bmy_06046T0/1-222 DLEAEDRVLW MLLTGKVWEM LAYVALPVLY LLIRKHINRA ---------- BACU003005/1-383 DLEAEDCVLW MLLTGKAWEM LAYVTLPVLY LLIRKHINRA HEALSEYRPL ENSTTRP00000010340/1-334 DLEAEDRVLW MLLTGKLWEM LAYVTLPVIY LLIRKHINRA HEALSEYRPL ENSBTAP00000016736/1-327 NLEAEDRVLW MLLTGKLWEL LAYVTLPVLY LLIRKHIHRA HEELSEYRPI ENSP00000366628/1-335 DLEAKDHVLW MLLTGKLWEM LAYVLLPLLY LLVRKHINRA HTALSEYRPI 251 300 bmy_06046T0/1-222 ---------- ---------- ---------- ---------- ---------- BACU003005/1-383 VSRAHQLQRR TSAADKKLVL IPIIFICLRV WSTVRFVLTL CGSPAVQTPV ENSTTRP00000010340/1-334 VSQ-HQLQRR TSAADNKLAL IPLIFVCLRI WSTVRFXXXX XXXXAVRTPV ENSBTAP00000016736/1-327 LSEAHQLQRR TSVANKKLVL IPLIFICLRV WSTVRFVLTL CGSPAVRMPV ENSP00000366628/1-335 LSQEHRLLRH SSMADKKLVL IPLIFIGLRV WSTVRFVLTL CGSPAVQTPV 301 350 bmy_06046T0/1-222 -----GIGNS FQGGANCIMF VLCTRTVRTR LLSLCCCCTS QPSAA-AESP BACU003005/1-383 LVVLHGIGNT FQGGANCIMF VLCTRTVRTR LLSLCCCCTS QPSAAAAESL ENSTTRP00000010340/1-334 LVVLHGIGNT FQGGANCITF VLCTRTVRTR LLSLCSCCCP QASA--AAES ENSBTAP00000016736/1-327 LVVLHGIGNT FQGGANCIMF VFCTRVVRTR LLSLCCCCCS PQP------- ENSP00000366628/1-335 LVVLHGIGNT FQGGANCIMF VLCTRAVRTR LFSLCCCCCS SQPP--TKSP 351 400 bmy_06046T0/1-222 GDPPGPLRPP RPASLRGPGG PQMNFQAPEL LPS- BACU003005/1-383 GGPPGPLRPP RPASLRGPGG PQMNFQAPEL LPS- ENSTTRP00000010340/1-334 AGPPKAPAPS RAGESQGPRR ------AAGE LPST ENSBTAP00000016736/1-327 ---PEAPAPS KRGESQRPRR ------TPNE LPST ENSP00000366628/1-335 AGTPKAPAPS KPGESQESQG ------TPGE LPST