KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 16:59:37 2014 Check: 00 .. Name: ENSP00000299821/1-606 Len: 653 Check: 3869 Weight: 1.00 Name: ENSBTAP00000016741/1-621 Len: 653 Check: 3443 Weight: 1.00 Name: ENSTTRP00000013252/1-603 Len: 653 Check: 920 Weight: 1.00 Name: bmy_14614T0/1-613 Len: 653 Check: 9725 Weight: 1.00 Name: BACU013515/1-484 Len: 653 Check: 5065 Weight: 1.00 // 1 50 ENSP00000299821/1-606 MEDVEARFAH LLQPIRDLTK NWEVDVAAQL GEYLEELDQI CISFDEGKTT ENSBTAP00000016741/1-621 -TRLEARFPY CXLPIRDLTR NWEVDVAAQL GEYLEELDQI CISFDKGKTT ENSTTRP00000013252/1-603 MEDVEARFAH LLQPIRDLTK NWEVDVAAQL GEYLEELDQI CISFDEGKTT bmy_14614T0/1-613 MEDVEARFAH LLQPIRDLTK NWEVDVAAQL GEYLEELDQI CISFDEGKTT BACU013515/1-484 MEDVEARFAH LLQPIRDLTK NWEVDVAAQL GEYLEELDQI CISFDEGKTT 51 100 ENSP00000299821/1-606 MNFIEAALLI QGSACVYSKK VEYLYSLVYQ ALDFISGKRR AKQLSSVQED ENSBTAP00000016741/1-621 MNFIEAALLI QGSACVYSKK VEYLYSLVYQ ALDFISGKKQ AKQLSSTPED ENSTTRP00000013252/1-603 MNFIEAALLI QGSACVYSKK VEYLYSLVYQ ALDFISGKKR AKQLSCERED bmy_14614T0/1-613 MNFIEAALLI QGSACVYSKK VEYLYSLVYQ ALDFISGKKR AKQLSCERED BACU013515/1-484 MNFIEAALLI QGSACVYSKK VEYLYSLVYQ ALDFISGKKR AKQLSCERED 101 150 ENSP00000299821/1-606 RANGVASSGV PQEAENEFLS LDDFPDSRTN VDLKNDQTPS EVLIIPLLPM ENSBTAP00000016741/1-621 GTIGDASSRA PQEAEQKFRA LDDLSDSCAN VDLRDDQVVS GTLI-PLLPN ENSTTRP00000013252/1-603 GPIGDAGSRA PQEVEYEFLS LDDLSDSRAN VDLRSDQASS ETLIVPLLPM bmy_14614T0/1-613 GPIGDAGSRA PQEVEYEFLS LDDLSDSRAN VDLRSDQAPS ETLIVPLLPM BACU013515/1-484 GPIGDAGSRA PQEVEYEFLS LDDLSDSRAN VDLRSDQAPS ETLIVPLLPM 151 200 ENSP00000299821/1-606 ALVAPDEMEK NNNPLYSRQG EVLASRKDFR MNTCVPHPRG AFMLEPEGMS ENSBTAP00000016741/1-621 ALVAPDEMEK NSNPLYSCQG EVLASRKDFR VNTCTPHPRG TFLLEPLGVS ENSTTRP00000013252/1-603 ALVAPDEMEK YNNPLYSCRG EVLASRKDFR MNTCTPHPRG AFMLEPVGMS bmy_14614T0/1-613 ALVAPDEMEK NSNPLYSCRG EVLASRKDFR MNTCTPHPRG AFMLEPVGMS BACU013515/1-484 ALVAPDETEK NSNPLYRC-- ---------- ---------- ---------- 201 250 ENSP00000299821/1-606 PMEPAGVSPM PGTQK---DT GRTEEQPMEV SVCRSPVPAL GFSQEPGPSP ENSBTAP00000016741/1-621 LME----ALQ PWNPK---EP GRAEEQPMEV SVCGSPGPAL STSQEPGSSP ENSTTRP00000013252/1-603 PTG------T PRNQKGEEAS GRAEEQPVEV SVRRSPVPLL SASQEPGTIP bmy_14614T0/1-613 PMG----ALL PRNHK---EA GRAEEQPMEV SXCRSPVPAL STSQEPGTTP BACU013515/1-484 ---------- ---------- G--------- ---------- ---PEPGTTP 251 300 ENSP00000299821/1-606 EGPMPLGGG- --EDEDAEEA VELPEASAPK AALEPKESRS PQQSAALPRR ENSBTAP00000016741/1-621 EGPVPRGGGV GEDEEDAEGA AEPPEASAPE VPMEPPEPRS PEQSVAQPRR ENSTTRP00000013252/1-603 EGPVPGGGG- --EEEDTEWA AEPPEASAPE VPVEPQEPRS PEQXXXXXXX bmy_14614T0/1-613 EGPVPGGGG- --EEEDTEGA AEPPEASAPE VPMEPQEPGS PEQSAAQPRR BACU013515/1-484 EGPVPGGGG- --EEEDTEGA AEPPEASAPE VPMEPREPRS PEQ------- 301 350 ENSP00000299821/1-606 YMLREREGAP EPASCVKETP DPWQSLDPFD SLESKPFKKG RPYSVPPCVE ENSBTAP00000016741/1-621 YTLRERKEAP EPASRLKDTP DPWQGLDPFD SPDSKPFRKG RPYSVPPRVE ENSTTRP00000013252/1-603 XXXXXXXXXX XXXXXXXETP DPWQGLDPFD SLDAKPFRKG RPYSVPPSVE bmy_14614T0/1-613 CALRERREAL EPASRLKETP DPWQGLDPFD SLDSKPFRKG RPYSVPPCVE BACU013515/1-484 ---------- -------ETP DPWQGLDPFD SLDSKPFRKG RPYSVPPCVE 351 400 ENSP00000299821/1-606 EALGQKRKRK GAAKLQDFHQ WYLAAYADHA DSRRLRRKGP SFADMEVLYW ENSBTAP00000016741/1-621 EAPGQKRKRK GAVKLQDFHQ WYLAAYADHT DSRRSRRKGP SFADMEVLYW ENSTTRP00000013252/1-603 EAPGQKRKRK GTVKLQDFHQ WYLAAYADHA DSRRPRRKGP SFADMEVLYW bmy_14614T0/1-613 EAPGQKRKRK GAVKLQDFHQ WYLAAFLLQM LTT-LTAGGP GERALPL--- BACU013515/1-484 EAPGQKRKRK GAVKLQDFHQ WYLAAYALFA ---------- ---------- 401 450 ENSP00000299821/1-606 THVKEQLETL RKLQRREVAE QWLR------ -PAEEDHLED SLEDLGAAAD ENSBTAP00000016741/1-621 KHVKEQLETL RKMQRREAAE RWLPRAEQGL WPVEEDRLED SVEDLG-AAD ENSTTRP00000013252/1-603 RHVKEQLETL RKLQRREAAE RWLR------ -PAEEDRLED SLEDLGAAAR bmy_14614T0/1-613 ---------- ------QAAE RWRPRAQEEP WPAEEDRLED SLEDLGAAAG BACU013515/1-484 ---------- ------QAAE RWRPRAQEEP WPAEEDRLED SLEDLGAAAG 451 500 ENSP00000299821/1-606 DFLEPEEYME PEGADPREAA DL--DAVPMS LSYEELVRRN VELFIATS-- ENSBTAP00000016741/1-621 DFLEPEEYAE PEGAEPGEDA DMEAEAMPAS LRYEELVQRN VELFVTASKQ ENSTTRP00000013252/1-603 DFLEPEEYAE PEGAEPGEDA DL--EAVPAS LSYEELVRRN VELFIATS-- bmy_14614T0/1-613 DFLEPEEYAE PEGAEPGEDA DLEAEAMPAS LSYEELVRRN VELFIATS-- BACU013515/1-484 DFLEPEEYAE PEGAEPGEDA DLEAEAMPAS LSYEELVRRN VELFIATS-- 501 550 ENSP00000299821/1-606 --------QK FVQETELSQR IRDWEDTVQP LLQEQEQHVP FDIHTYGDQL ENSBTAP00000016741/1-621 DVFVTTSRQE LVQETELKQH IRGWEDAIQS LLQEQEEHVP FDIHTYGDQV ENSTTRP00000013252/1-603 --------QK FVQETELSQR IRDWEDVIQP LLQEQEQHVP FDIHTYGDQV bmy_14614T0/1-613 --------QK FVQETELSQR IRDWEDVIQP LLQEQEQHVP FDIHAYGDQV BACU013515/1-484 --------QK FVQETELSQR IRDWEDVIQP LLQEQEQHVP FDIHTYGDQV 551 600 ENSP00000299821/1-606 VSRFPQLNEW CPFAELVAGQ PAFEVCRSML ASLQL----- ---------- ENSBTAP00000016741/1-621 VSRFSQLNQW CPFAKLVAGQ PAFEVCRSML ASLQL----- ---------- ENSTTRP00000013252/1-603 VSRFSQLNQW CPFAELVAGQ PAFEVCRSML ASLQL----- ---------- bmy_14614T0/1-613 VSRFSQLNQW CPFAELVAGQ PAFEVCRSML ASLQLVSGPG SLGGKRSLVS BACU013515/1-484 VSRFSQLNQW CPFAELVAGQ PAFEVCRSML ASLQL----- ---------- 601 650 ENSP00000299821/1-606 -------AND YTVEITQQPG LEMAVDTMSL RLLTHQRAHK RFQTYAAPSM ENSBTAP00000016741/1-621 -------AND YTVEITQQPG LEAAVDTMSL RLLTHQRARQ RFQTYAAPST ENSTTRP00000013252/1-603 -------AND YTVEITQQPG LEAAVDTMSL RLLTYQRAHK RFQTYAAPSM bmy_14614T0/1-613 ADELSLQAND YTVEITQQPG LEAAVDTMSL RLLTYQRAHK RFQTYAAPSM BACU013515/1-484 -------AND YTVEITQQPG LEAAVDTMSL RLLTYQRAHK RFQTYAAPSM 651 700 ENSP00000299821/1-606 AQP ENSBTAP00000016741/1-621 VQP ENSTTRP00000013252/1-603 VQP bmy_14614T0/1-613 VQP BACU013515/1-484 VQP