KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 4 Type: P Thu May 15 16:59:38 2014 Check: 00 .. Name: ENSP00000406546/1-618 Len: 750 Check: 9228 Weight: 1.00 Name: ENSTTRP00000009504/1-492 Len: 750 Check: 667 Weight: 1.00 Name: ENSBTAP00000016751/1-619 Len: 750 Check: 4149 Weight: 1.00 Name: bmy_13372T0/1-746 Len: 750 Check: 2008 Weight: 1.00 // 1 50 ENSP00000406546/1-618 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000009504/1-492 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000016751/1-619 ---------- ---------- ---------- ---------- ---------- bmy_13372T0/1-746 MEFVQELGKG ERAVSCPKSL IPSLCFIDTP APCPLQAANF TQTLTSYSPS 51 100 ENSP00000406546/1-618 ---------- ----MSRSPL NPSQLRSVGS QDALAPLP-P PAPQNPSTHS ENSTTRP00000009504/1-492 ---------- ----MSRSPP NAIQLRSVGS QGTMASLPQP SAVQNPSSHS ENSBTAP00000016751/1-619 ---------- ----MSQSPP NAIQLQSVGS QGTLATLPRP PDVQNPSSDS bmy_13372T0/1-746 LTPGQARQDE RQGSMSRSPR NAIQLRSVGS QSTMASLPQP SAVQNPSSHS 101 150 ENSP00000406546/1-618 WDPLCGSLPW GLSCLLALQH VLVMASLLCV SHLLLLCSLS PGGLSYSPSQ ENSTTRP00000009504/1-492 WASVCGSPPW GLSCLLALQH ILVLASLLCA SHLLLLQCLP AGGLSSSPAQ ENSBTAP00000016751/1-619 WASLSGPPPW GLSCLLALQH ILVLASLLCA SHLLLLQSLP AGGLSFSPAQ bmy_13372T0/1-746 WTSLCGSPPW GLSCLLALQH ILVLASLLCA SHLLLLQSLP AGGLSSSPAQ 151 200 ENSP00000406546/1-618 LLASSFFSCG MSTILQTWMG SRLPLVQAPS LEFLIPALVL TSQKLPRAIQ ENSTTRP00000009504/1-492 LLASSLFSCG VSTALQTWMG SRLPLIQAPS LEFLIPGLVL TSQKLPLTTR ENSBTAP00000016751/1-619 LLASSLFACG VSTSLQTWMG SRLPLVQAPS LQFLIPALVL TSQKLPLALR bmy_13372T0/1-746 LLASSLFSCG VSTALQTWMG SRLPLIQAPS LEFLIPGLVL TSQKLPLTTG 201 250 ENSP00000406546/1-618 TPGNCEHRAR ARASLMLHLC RGPSCHGLGH WNTSLQEVSG AVVVSGLLQG ENSTTRP00000009504/1-492 TPGN------ --SSLVLRLC GGPGCHGLEL WNTSLREVSG AVVVSGLLQV ENSBTAP00000016751/1-619 TPGNCEHRAR AQASLVLRLC GGPGCHGLEL WNTSIREVSG AVVVSGLLQA bmy_13372T0/1-746 TPGNCEHRAR AQASLVLRLC GGPGCHGLEL WNTSLREVSG AVVVSGLLQV 251 300 ENSP00000406546/1-618 MMGLLGSPGH VFPHCGPLVL APSLVVAGLS AHREVAQFCF THWGLALLVI ENSTTRP00000009504/1-492 MLGLFGGPGH LFPHCGPLVL APSLVVAGLS AHREVALFCS AHWGLASL-- ENSBTAP00000016751/1-619 ILGLLGGPGH LFPRCGPLVL APSLVVAGLS VYREVALLCS THWGLASLLI bmy_13372T0/1-746 TLGLFGGPGH LFPHCGPLVL APSLVVAGLS AHREVALFCS AHWGLASLYV 301 350 ENSP00000406546/1-618 ---------- -LLMVVC--- ---SQHLGSC QFHVCP---W RRASTSSTHT ENSTTRP00000009504/1-492 ---------- ---------- ----TWVPAC -SRLTPGGEL QPLQPTLTSL ENSBTAP00000016751/1-619 ---------- -VLMVVC--- ---SQHLGSC ---LLPPRHW RPASTSSTHT bmy_13372T0/1-746 SPERRGARSF PLLGLSCSWW SVLSTWAPAC -YRLTPGGQL QPLQPTLTSL 351 400 ENSP00000406546/1-618 PLPVFRLLSV LIPVACVWIV SAFVGFSVIP QELSAPTKAP WIWLPHPGEW ENSTTRP00000009504/1-492 SSGSSR---- ----SCL--- ---------P RH-------- ---------- ENSBTAP00000016751/1-619 HILAFRLLSV LIPVACVWIV SALLGLSIIP GELSAPTKAP WFWLPHPAEW bmy_13372T0/1-746 SSGSSRYVEV LIPVACVWII SALLGLSIIP RELSA--EAP WFWLPHPAEW 401 450 ENSP00000406546/1-618 NWPLLTPRAL AAGISMALAA STSSLGCYAL CGRLLHLPPP PPHACSRGLS ENSTTRP00000009504/1-492 ---------- ---------- --RGFGCLTQ XXXXXXXXXX XXXXXXXXXX ENSBTAP00000016751/1-619 DWPLLTPRAL AAGISMALAA STSSLGCYAL CGQLLRLPSP PPHACSRGLS bmy_13372T0/1-746 DWPLLTPRAL AAGISMALAA STSSLGCYAL CGQLLHLPSP PPHACSRGLS 451 500 ENSP00000406546/1-618 LEGLGSVLAG LLGSPMGTAS SFPNVGKVGL IQAGSQQVAH LVGLLCVGLG ENSTTRP00000009504/1-492 XXXXXXXXXX XXXXX----- ---------- ---------- ---------- ENSBTAP00000016751/1-619 LEGLGSVLAG LLGSPMGTAS SFPNVGTVGL LQAGPRRVAH LVGLFCMALG bmy_13372T0/1-746 LEGLGSVLAG LLGSPMGTAS SFPNVGTVSL LQAGSRRVAH LVGLLCVALG 501 550 ENSP00000406546/1-618 LSPRLAQLLT TIPLPVV--- ---------- ---------- ---------- ENSTTRP00000009504/1-492 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000016751/1-619 LSPRLAQLLT TIPLPVL--- ---------- ---------- ---------- bmy_13372T0/1-746 LSPRLVQLLT TIPLPVLAIS WPLDWPSLLL GLLVVSAHYN LPWPAILSAV 551 600 ENSP00000406546/1-618 ---------- ----GGVLGV TQAVVLSAGF SSFYLADIDS GRNIFIVGFS ENSTTRP00000009504/1-492 ---------- ----XXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXVGFS ENSBTAP00000016751/1-619 ---------- ----GGVLGV TQAMVLSTGF SSFHLADIDS GRNVFIVGFS bmy_13372T0/1-746 PALSQRLQLL LYETGGVLGV TQAVVLSTGF SSFHLADIDS GRNVFIVGFS 601 650 ENSP00000406546/1-618 IFMALLLPRW FREAPVLFST GWSPLDVLLH SLLTQPIFLA GLSGFLLENT ENSTTRP00000009504/1-492 IFMALLLPRW FREAPVLLST GWSPLDVLLR SLLTEPIFLA GLLGFLLENT ENSBTAP00000016751/1-619 IFMALLLPRW FREASVLLKT GWSPLDVLLR SLLTEPIFLA GLLGFLLENT bmy_13372T0/1-746 IFMALLLPRW FREAPVLLST GWSPLDVLLR SLLTEPIFLA GLLGFFLENT 651 700 ENSP00000406546/1-618 IPGTQLERGL GQGLPSPFTA QEARMPQKPR EKAAQVYRLP FPIQNLCPCI ENSTTRP00000009504/1-492 IPGTQLERGL GQGLPSSFTA QEVRMPQKSR EKPAQEYELP FSIQNLCPCI ENSBTAP00000016751/1-619 IPGTRLERGL GQGLPPPFTA REAPMPQKSR EKADQEYELP FSIQNLCPCI bmy_13372T0/1-746 IPGTQLERGL GQGLPSSFTA QKVRMPQKSR EKAAQEYELP FSIQNLCPCI 701 750 ENSP00000406546/1-618 PQPLHCLCPL PEDPGDEEGG SSEPEEMADL LPGSGEPCPE SSREGFRSQK ENSTTRP00000009504/1-492 PHPLRCLCPL PEDSGNEEGV PSEPGETADL LPGFGEQCPG SSREELRSQL ENSBTAP00000016751/1-619 PQPLRCLCPL PQDSGNEERG PSEPGETADL LPDFGDQCPQ PSRGLFQSRD bmy_13372T0/1-746 PQSLRCLCPL PEDSGNEEGG PSEPGETADL LPGFGEQCPG SSREELRSQ-