KEY:
ENSP* - Homo sapiens (Human)
ENSBTA* - Bos taurus (Cow)
ENSTTR* - Tursiops truncatus (Dolphin)
bmy_* - Balaena mysticetus (Bowhead whale)
BACU* - Balaenoptera acutorostrata (Minke whale)
Copy from below the line for a valid .msf file.
----------------------------------------------------------------------------------
NoName MSF: 5 Type: P Thu May 15 16:59:42 2014 Check: 00 ..
Name: ENSP00000341268/1-312 Len: 326 Check: 6248 Weight: 1.00
Name: ENSBTAP00000016776/1-312 Len: 326 Check: 7402 Weight: 1.00
Name: ENSTTRP00000009696/1-262 Len: 326 Check: 4823 Weight: 1.00
Name: bmy_05282T0/1-324 Len: 326 Check: 7506 Weight: 1.00
Name: BACU019683/1-264 Len: 326 Check: 2379 Weight: 1.00
//
1 50
ENSP00000341268/1-312 ---------- MAAGQNGHEE WVGSAYLFVE SSLDKVVLSD AYAHPQQKVA
ENSBTAP00000016776/1-312 ---------- MAAGPNGLEE WVGSAYLFVE SSLDKVVLSD AYAHQQQKVA
ENSTTRP00000009696/1-262 ---------- ---------- ---------- ---------- ----------
bmy_05282T0/1-324 MLERPCPGGK MAAGPNGLEE WVGSAYLFVE SSLEKVVLSD AYAHPQQKVA
BACU019683/1-264 ---------- ---------- ---------- ---------- ----------
51 100
ENSP00000341268/1-312 VYRALQAALA ESGGSPDVLQ MLKIHRSDPQ LIVQLRFCGR QPCGRFLRAY
ENSBTAP00000016776/1-312 MYGALQTALA ESGGSPDVLQ MLKIHRSDPQ LIVQLRFSGR QACSRFLRAY
ENSTTRP00000009696/1-262 ---------- -SGGSPDVLQ MLKIHRSDPQ LIVQLRFSGR QACGRFLRTY
bmy_05282T0/1-324 VYRALRTALA ESGGSSDVLQ MLKIHRSDPQ LIVQLRFSGR QACGRFLRTY
BACU019683/1-264 ---------- -SGGSPDVLQ MLKIHRSDPQ LIVQLRFSGR QACGRFLRTY
101 150
ENSP00000341268/1-312 REGALRAALQ RSLAAALAQH SVPLQLELRA GAERLDALLA DEERCLSCIL
ENSBTAP00000016776/1-312 REGALRATLQ GCLARALALN SVPLQLELRA GAEQLDALLT NEERCLNCIC
ENSTTRP00000009696/1-262 REGALRAALQ GCLAAELTLH SVPLQLELRA GAEQLDALLT DEERCLNCIF
bmy_05282T0/1-324 REGALRAALQ GCLAAELTLH SMPLQLELRA GAEQLDALLT DEERCLNCIF
BACU019683/1-264 REGALRAALQ GCLAAELTLH SMPLQLELRA GAEQLDALLT DEERCLNCIF
151 200
ENSP00000341268/1-312 AQQPDRLRDE ELAELEDALR NLKCGS-GAR GGDGEVASAP LQPPVPSLSE
ENSBTAP00000016776/1-312 AQKPDRLRDE ELTELENALR NLTCGSAGGQ GSDVQGTPAP LQSLAPSPPE
ENSTTRP00000009696/1-262 AQKPDRLRDE ELTELEDALR NLTCGS-GGQ GGDVEGAPAP SQSLAPSPSE
bmy_05282T0/1-324 AQKPDRLRDE ELTELEDALR NLTCGS-EGQ GGDVEGAPAP SQSLAPSPSE
BACU019683/1-264 AQKPDRLRDE ELTELEDALR NLTCGS-GGQ GGDVEGAPAP SQSLAPSPSE
201 250
ENSP00000341268/1-312 VKPP---PPP PPAQTFLFQG QPVVNRPLSL KDQQTFARSV GLKWRKVGRS
ENSBTAP00000016776/1-312 EKP----PPP QPGQTFLFQG QPIVNRPLNL QDQQKFARSV GLKWRKVGRS
ENSTTRP00000009696/1-262 EKPPPP-PPP PSGQTFLFHD QPVMNRPLSL QD-QTFARSV GLKWRKVGRS
bmy_05282T0/1-324 EKPPPP-PPP SSGQTFLFQG QPVVNRPLSL QDQQTFARSV GLKWRKVGRS
BACU019683/1-264 EKPPPPPPPP PSGQTFLFQG QPVVNRPLSL QDQQTFARSV GLKWRKVGRS
251 300
ENSP00000341268/1-312 LQRGCRALRD PALDSLAYEY EREGLYEQAF QLLRRFVQAE GRRATLQRLV
ENSBTAP00000016776/1-312 LQRSCRALRD PALDSLAYEY ERDGLYEQAF QLLRRFVQAE GRRATLQRLV
ENSTTRP00000009696/1-262 LQRGCRALRD PALDSLAYEY EREGLYEQAF QLLRRFVQAE GRRATLQRLV
bmy_05282T0/1-324 LQRGCRALRD PALDSLAYEY EREGLYEQAF QLLRRFVQAE GRRATLQRLV
BACU019683/1-264 LQRGCRALRD PALDSLAYEY EREGLYEQAF QLLRRFVQAE GRRATLQRLV
301 350
ENSP00000341268/1-312 EALEENELTS LAEDLLGLTD PNGGLA
ENSBTAP00000016776/1-312 EALEENELTS LAEDLLGLAN PDGSLA
ENSTTRP00000009696/1-262 EALEENELTS LAEDLLGLAN PHGGLA
bmy_05282T0/1-324 EALEENELTS LAEDLLGLTN PHGGLA
BACU019683/1-264 EALEENELTS LAEDLLGLTN PHGGLA