KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 16:59:43 2014 Check: 00 .. Name: ENSP00000420686/1-305 Len: 343 Check: 8377 Weight: 1.00 Name: ENSTTRP00000016605/1-304 Len: 343 Check: 6825 Weight: 1.00 Name: ENSBTAP00000016779/1-340 Len: 343 Check: 6255 Weight: 1.00 Name: bmy_19057T0/1-334 Len: 343 Check: 9778 Weight: 1.00 Name: BACU009343/1-251 Len: 343 Check: 6022 Weight: 1.00 // 1 50 ENSP00000420686/1-305 MLAVRKARRK LRMGTICSPN PSGTKTSSEV CNADWMASLP PHLHNLPLSN ENSTTRP00000016605/1-304 MLAVRKVRRK LRMGTICSPS PSGTKT-LEV CNADWMASLP PLLHNVPLSN ENSBTAP00000016779/1-340 MLAFRKVRRK LRMGTICSPN PSGTKT-LEV CNADWMASLP SHLHNVPLSN bmy_19057T0/1-334 ---------K LENFCICSQY SACVLGSKFL LLFSYQLDYL SQLQSQPLSS BACU009343/1-251 ---------- ---------- ---------- ---------- ---------- 51 100 ENSP00000420686/1-305 --LAIPGSHD SFSYWVDEKS PVGPDQTQAI KRLARISLVK KLMKKWSVTQ ENSTTRP00000016605/1-304 --LAIPGSHD SFSYWVDEKS PVGPDQTPAI KRLARISLVK KLMKKWSVTQ ENSBTAP00000016779/1-340 --LAIPGSHD SFSYWVDEKS PVGPDQTPAI KRLARISFVK KVMKKWSVTQ bmy_19057T0/1-334 HLLLHIGSHD SFSYWVDEKS PVGPDQTPAI KRLARISLVK KLMKKWSVTQ BACU009343/1-251 ---------- ---------- ---------- ---------- --MKKWSVTQ 101 150 ENSP00000420686/1-305 NLTFREQLEA GIRYFDLRVS SKPGDADQEI YFIHGLFGIK VWDGLMEIDS ENSTTRP00000016605/1-304 NLTFREQLDA GIRYFDLRVS SKPGDADQEI YFIHGLFGIR VWDGLMEIDS ENSBTAP00000016779/1-340 NLTFREQLDA GIRYFDLRVS SKPGDADQEI YFIHGLFGIK VWDGLMEINS bmy_19057T0/1-334 NLTFREQLDA GIRYFDLRVS SKPGDADQEI YFIHGLFGIR VWDGLMEIDS BACU009343/1-251 NLTFREQLDA GIRYFDLRVS SKPGDADQEI YFIHGLFGIR VWDGLMEIDS 151 200 ENSP00000420686/1-305 FLTQHPQEII FLDFNHFYAM DETHHKCLVL RIQEAFGNKL CPACSVESLT ENSTTRP00000016605/1-304 FLTQHPQEIV FLDFNHFYAM DEAHHKRLIL RIQEAFGNKL CSACSVESMT ENSBTAP00000016779/1-340 FLTQHPQEIV FLDFNHFYAM DEAHHKRLIL RIQEAFGSKL CSACSVESMT bmy_19057T0/1-334 FLTQHPQEIV FLDFNHFYAM DEAHHKRLIL RIQEAFGSKL CSACSVESMT BACU009343/1-251 FLTQHPQEIV FLDFNHFYAM DEAHHKRLIL RIQEAFGSKL CSACSVESMT 201 250 ENSP00000420686/1-305 LRTLWEKNCQ VLIFYHCPFY KQYPFLWPGK KIPAPWANTT SVRKLILFLE ENSTTRP00000016605/1-304 LQTLWEKKSQ VLIFYHCPFY KQYPFLWPGK KIPAPWANTT SVRKLILFLE ENSBTAP00000016779/1-340 LQRLWEKKYQ VLIFYHCPFY KQYAFLWPGK KIPAPWANTT SVRKLILFLE bmy_19057T0/1-334 LQTLWEKKCQ VLIFYHCPFY KQYPFLWPGK KIPAPWANTT SVHKLILFLE BACU009343/1-251 LRTLWEKKCQ VLIFYHCPFY KQYPFLWPGK KIPAPWANTT SVHKLILFLE 251 300 ENSP00000420686/1-305 TTLSERASRG SFHVSQAILT PRVKTIARGL VGGLKNTLVH SN-----RWN ENSTTRP00000016605/1-304 TTLSERSPHG SFHVSQAILT PRVKTIARGL VGGLKNTLVH XX-----XXX ENSBTAP00000016779/1-340 TTLSERSPHG SFHVSQAILT PRVKTIARGL VGGLKNTLVH RNLPAILDWV bmy_19057T0/1-334 TTLSERSPHG SFHVSQAILT PRVKTIARGL VGGLKNTLVH RNLPAILDWV BACU009343/1-251 TTLSERSPHG SFHVSQAILT PRVKTIARGL VGGLKNTLVH RNLPAILDWV 301 350 ENSP00000420686/1-305 SHGPS----- ---------- ---------- --LLSQERS- --- ENSTTRP00000016605/1-304 XXXPP----- ---------- ---------- --LLNQEGS- --- ENSBTAP00000016779/1-340 KTQKPGAMGV NIITSDFVDL VDFATTVIEL NDLLQEDRAL AKC bmy_19057T0/1-334 KTQKPGALGV NIITSDFVDL VDFATAVIEL NDLLQEDRAL AKC BACU009343/1-251 KTQKPGALGV NIITSDFVDL VDFATAVIEL NDLLQEDRAL AKC