KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 4 Type: P Thu May 15 16:59:45 2014 Check: 00 .. Name: ENSP00000381693/1-1842 Len: 1938 Check: 7472 Weight: 1.00 Name: ENSBTAP00000016807/1-1835 Len: 1938 Check: 3098 Weight: 1.00 Name: bmy_08684T0/1-1892 Len: 1938 Check: 4704 Weight: 1.00 Name: ENSTTRP00000011460/1-1222 Len: 1938 Check: 3322 Weight: 1.00 // 1 50 ENSP00000381693/1-1842 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000016807/1-1835 ---------- ---------- ---------- ---------- ---------- bmy_08684T0/1-1892 MGEAAPQQPR GPGCRALRPG LESRRLATIP VHTSQLGKAP SRLRSSPGTA ENSTTRP00000011460/1-1222 ---------- ---------- ---------- ---------- ---------- 51 100 ENSP00000381693/1-1842 ---------- ---------- ---------- ---------- ---MELMFAE ENSBTAP00000016807/1-1835 ---------- ---------- ---------- ---------- ---MELMFAE bmy_08684T0/1-1892 ALSAPATPSP GSPLRPRASP QPPAGGPGPG SAGGDPAPGG AGPMELMFAE ENSTTRP00000011460/1-1222 ---------- ---------- ---------- ---------- ---------- 101 150 ENSP00000381693/1-1842 WEDGERFSFE DSDRFEEDSL CSFISEAESL CQNWRGWRKQ SAGPNSPTGG ENSBTAP00000016807/1-1835 WEDGERFSFE DSDRFEEDSL CSFISEAESL CQNWRGWRKQ SAGPNSPTGG bmy_08684T0/1-1892 WEDGERFSFE DSDRFEEDSL CSFISEAESL CQNWRGWRKQ SAGPNSPTGG ENSTTRP00000011460/1-1222 ---------- ---------- ---------- ---------- ---------- 151 200 ENSP00000381693/1-1842 GGGGGSGGTR MRDGLVIPLV ELSAKQVAFH IPFEVVEKVY PPVPEQLQLR ENSBTAP00000016807/1-1835 GGGGGSGGTR MRDGLVIPLV ELSAKQVAFH IPFEVVEKVY PPVPEQLQLR bmy_08684T0/1-1892 GGGGGSGGTR MRDGLVIPLV ELSAKQVAFH IPFEVVEKVY PPVPEQLQLR ENSTTRP00000011460/1-1222 ---------- ---------- ---------- ---------- ---------- 201 250 ENSP00000381693/1-1842 IAFWSFPENE EDIRLYSCLA NGSADEFQRG DQLFRMRAVK DPLQIGFHLS ENSBTAP00000016807/1-1835 IAFWSFPENE EDIRLYSCLA NGSADEFQRG DQLFRMRAVK DPLQIGFHLS bmy_08684T0/1-1892 IAFWSFPENE EDIRLYSCLA NGSADEFQRG DQLFRMRAVK DPLQIGFHLS ENSTTRP00000011460/1-1222 ---------- ---------- ---------- ---------- ---------- 251 300 ENSP00000381693/1-1842 ATVVPPQMVP PKGAYNVAVM FDRCRVTSCS CTCGAGAKWC THVVALCLFR ENSBTAP00000016807/1-1835 ATVVPPQMVP PKGAYNVAVM FDRCRVTSCS CTCGAGAKWC THVVALCLFR bmy_08684T0/1-1892 ATVVPPQMVP PKGAYNVAVM FDRCRVTSCS CTCGAGAKWC THVVALCLFR ENSTTRP00000011460/1-1222 ---------- ---------- ---------- ---------- ---------- 301 350 ENSP00000381693/1-1842 IHNASAVCLR APVSESLSRL QRDQLQKFAQ YLISELPQQI LPTAQRLLDE ENSBTAP00000016807/1-1835 IHNASAVCLR APVSESLSRL QRDQLQKFAQ YLISELPQQI LPTAQRLLDE bmy_08684T0/1-1892 IHNASAVCLR APVSESLSRL QRDQLQKFAQ YLISELPQQI LPTAQRLLDE ENSTTRP00000011460/1-1222 ---------- ---------- ---------- ---------- ---------- 351 400 ENSP00000381693/1-1842 LLSSQSTAIN TVCGAPDPTA GPSASDQSTW YLDESTLTDN IKKTLHKFCG ENSBTAP00000016807/1-1835 LLSSQSTAIN TVCGAPDPTA GPSASDQSTW YLDESTLTDN IKKTLHKFCG bmy_08684T0/1-1892 LLSSQSTAIN TVCGAPDPTA GPSASDQSTW YLDESTLTDN IKKTLHKFCG ENSTTRP00000011460/1-1222 ---------- ---------- ---------- ---------- ---------- 401 450 ENSP00000381693/1-1842 PSPVVFSDVN SMYLSSTEPP AAAEWACLLR PLRGREPEGV WNLLSIVREM ENSBTAP00000016807/1-1835 PSPVVFSDVN SMYLSSTEPP AAAEWACLLR PLRGREPEGV WNLLSIVREM bmy_08684T0/1-1892 PSPVVFSDVN SMYLSSTEPP AAAEWACLLR PLRGREPEGV WNLLSIVREM ENSTTRP00000011460/1-1222 ---------- ---------- ---------- ---------- ---------- 451 500 ENSP00000381693/1-1842 FKRRDSNAAP LLEILTDQCL TYEQITGWWY SVRTSASHSS ASGHTGRSNG ENSBTAP00000016807/1-1835 FKRRDSNAAP LLEILTDQCL TYEQITGWWY SVRTSASHSS ASGHTGRSNG bmy_08684T0/1-1892 FKRRDSNAAP LLEILTDQCL TYEQITGWWY SVRTSASHSS ASGHTGRSNG ENSTTRP00000011460/1-1222 ---------- ---------- ---------- ---------- ---------- 501 550 ENSP00000381693/1-1842 QSEVAAHACA SMCDEMVTLW RLAVLDPALS PQRRRELCTQ LRQWQLKVIE ENSBTAP00000016807/1-1835 QSEVAAHACA SMCDEMVTLW RLAVLDPALS PQRRRELCVQ LRQWQLKVIE bmy_08684T0/1-1892 QSEVAAHACA SMCDEMVTLW RLAVLDPALS PQRRRELCVQ LRQWQLKVIE ENSTTRP00000011460/1-1222 ---------- ---------- ---------- ---------- ---------- 551 600 ENSP00000381693/1-1842 NVKRGQHKKT LERLFPGFRP AVEACYFNWE EAYPLPGVTY SGTDRKLALC ENSBTAP00000016807/1-1835 NVKRGQHKKT LERLFPGFRP AVEACYFNWE EAYPLPGVTY SATDRKLALC bmy_08684T0/1-1892 NVKRGQHKKT LERLFPGFRP AVEACYFNWE EAYPLPGVTY SATDRKLALC ENSTTRP00000011460/1-1222 ---------- ---------- ---------- ---------- ---------- 601 650 ENSP00000381693/1-1842 WARALPSRPG ASRSGGLEES RDRPRPLPTE PAVRPKEPGT KRKGLGEGVP ENSBTAP00000016807/1-1835 WARALPPRPG ASRNGGLEES RERPRPLPAE PAVRPKEPGA KRKGLGEGVP bmy_08684T0/1-1892 WARALPPRPG ASRSGGLEES RERPRPLPAE PAVRPKEPGA KRKGLGEGVL ENSTTRP00000011460/1-1222 ---------- ---------- ---------- ---------- ---------- 651 700 ENSP00000381693/1-1842 SSQRGPRRLS AEGGDKALHK MGPGGGKAKA LGGAGSGSKG SAGGGSKRRL ENSBTAP00000016807/1-1835 ASQRGPRRLS AEGGDKALHK MGPGGGKAKT LGGAGCGGKG SVGSGSKRRL bmy_08684T0/1-1892 SSQRGPRRLS AEGGDKALHK MGPGGGKAKA LGGAGSGGKG SAGGGSKRRL ENSTTRP00000011460/1-1222 ---------- ---------- ---------- ---------- ---------- 701 750 ENSP00000381693/1-1842 SSEDSSLEPD LAEMSLDDSS LALGAEASTF GGFPESPPPC PLHGGSRGPS ENSBTAP00000016807/1-1835 SSEDSSLEPD LAEMSLDDSS LALGAEASTF GGFPESPPPC PHPGGSRGPS bmy_08684T0/1-1892 SSEDSSLEPD LAEMSLDDSS LALGAEASTF GGFPESPPPC PHPGGSRGPS ENSTTRP00000011460/1-1222 ---------- ---MSLDDSS LALGAEASTF GGFPESPPPC PHPGASRGPS 751 800 ENSP00000381693/1-1842 TFLPEPPDTY EEDGGVYFSE GPEPPTASVG PPGLLPGDVC TQDDLPSTDE ENSBTAP00000016807/1-1835 TFLPEPPDTY EEDGGVYFSE GPEPPTASAG PPGLLPRELC TRDDLPSTDE bmy_08684T0/1-1892 TFLPEPPDTY EEDGGVYFSE GPEPSTASAG PPGLLPRELC TRDDLASTDE ENSTTRP00000011460/1-1222 TFLPEPPDTY EEDGGVYFSE GPEPSTASAG PPGLLPRELC TRDDLIRTDE 801 850 ENSP00000381693/1-1842 SGNGLPKTKE AAPAVGEEDD DYQAYYLNAQ DGAGGEEEKA EGGAGEEHDL ENSBTAP00000016807/1-1835 SGNGLPKTKE AAPVVGEEDD DYQAYYLNAQ DGAGGEEEKA EGGAGEEHDL bmy_08684T0/1-1892 SGNGLPKTKE AAPVVGEEED DYQAYYLNAQ DGAGGEEEKA EGGAGEEHDL ENSTTRP00000011460/1-1222 SGNGLPKTKE AAPAVGEEED DYQAYYLNAQ DGAGGEEEKA EGGAGEEHDL 851 900 ENSP00000381693/1-1842 FAGLKPLEQE SRMEVLFACA EALHAHGYSS EASRLTVELA QDLLANPPDL ENSBTAP00000016807/1-1835 FAGLKPLEQE SRMEILFACA EALHAHGYSS EASRLTVELA QDLLANPPDL bmy_08684T0/1-1892 FAGLKPLEQE SRME------ ---------- ---------- ---------- ENSTTRP00000011460/1-1222 FAGLKPLEQE SRMEILFACA EALHAHGYSS EASRLTVELA QDLLANPPDL 901 950 ENSP00000381693/1-1842 KVEPPPAKGK KNKVSTSRQT WVATNTLSKA AFLLTVLSER PEHHNLAFRV ENSBTAP00000016807/1-1835 KVEPPPAKGK KNKVSTSRQT WVATNTLTKA AFLLTVLSER PEHHNLAFRV bmy_08684T0/1-1892 --------GK KNKVSTSRQT WVATNTLTKA AFLLTVLSER PEHHNLAFRV ENSTTRP00000011460/1-1222 KVEPPPAKGK KNKVSTSRQT WVATNTLTKA AFLLTVLSER PEHHNLAFRV 951 1000 ENSP00000381693/1-1842 GMFALELQRP PASTKALEVK LAYQESEVAA LLKKIPLGPS EMSTMRCRAE ENSBTAP00000016807/1-1835 GMFALELQRP PASTKALEVK LAYQESEVAT LLKKIPLGPS EMSTVRCRAE bmy_08684T0/1-1892 GMFALELQRP PASTKALEVK LAYQESEVAT LLKKIPLGPS EMSTVRCRAE ENSTTRP00000011460/1-1222 GMFALELQRP PASTKALEVK LAYQESEVAT LLKKIPLGPS EMSTVRCRAE 1001 1050 ENSP00000381693/1-1842 ELREGTLCDY RPVLPLMLAS FIFDVLCAPV VSPTGSRPPS RNWNSETPGD ENSBTAP00000016807/1-1835 ELREGTLCDY RPVLPLMLAS FIFDVLCAPV VSPTGSRPPS RNWNNEMPGD bmy_08684T0/1-1892 ELREGTLCDY RPVLPLMLAS FIFDVLCTPV VSPTGSRPPS RNWNNEMPGD ENSTTRP00000011460/1-1222 ELREGTLCDY RPVLPLMLAS FIFDVLCTPV VSPTGSRPPS RNWNNEMPGD 1051 1100 ENSP00000381693/1-1842 EELGFEAAVA ALGMKTTVSE AEHPLLCEGT RREKGDLALA LMITYKDDQA ENSBTAP00000016807/1-1835 EELGFEAAVA ALGMKTTVSE AEHPLLCEGT RREKGDLALA LMITYKDDQA bmy_08684T0/1-1892 EELGFEAAVA ALGMKTTVSE AEHPLLCEGT RREKGDLALA LMITYKDDQA ENSTTRP00000011460/1-1222 EELGFEAAVA ALGMKTTVSE AEHPLLCEGT RREKGDLALA LMITYKDDQA 1101 1150 ENSP00000381693/1-1842 KLKKILDKLL DRESQTHKPQ TLSSFYSSSR PTTASQRSPS KHGGPSAPGA ENSBTAP00000016807/1-1835 RLKKILDKLL DRESQTHKPQ TLSSFYSSSR PATASQRSPS KHGGPSAPGA bmy_08684T0/1-1892 KLKKILDKLL DRESQTHKPQ TLSSFYSSSR PATASQRSPS KHGGPSAPGA ENSTTRP00000011460/1-1222 KLKKILDKLL DRESQTHKPQ TLSSFYSSSR PATASQRSPS KHGGPSAPGA 1151 1200 ENSP00000381693/1-1842 LQPLTSGSAG PAQPGSVAGA GPGPTEGFTE KNVP--ESSP HSPCEGLPSE ENSBTAP00000016807/1-1835 LQPLTSGSAG PAQPGSVAGA GPGPTEGFTE KNVPDVESSP HSPCEGLPPE bmy_08684T0/1-1892 LQPLTSASAG PAQPGSVAGA GPGPTEGFTE KNVP--ESSP HSPCEGLPSE ENSTTRP00000011460/1-1222 LQPLTSGSAG PAQPGSVAGA GPGPTEGFTE KNVP--ESSP HSPCEGLPSE 1201 1250 ENSP00000381693/1-1842 AALTPRPEGK VPSRLALGSR GGYNGRGWGS PGRPKKKHTG MASIDSSAPE ENSBTAP00000016807/1-1835 AALTPRPEGK VPSRLALGSR GGYNGRGWGS PGRPKKKHTG MASIDSSAPE bmy_08684T0/1-1892 AALTPRPEGK VPSRLALGSR GGYNGRGWGS PGRPKKKHTG MASIDSSAPE ENSTTRP00000011460/1-1222 AALTPRPEGK VPSRLALGSR GGYNGRGWGS PGRPKKKHTG MASIDSSAPE 1251 1300 ENSP00000381693/1-1842 TTSDSSPTLS RRPLRGGWAP TSWGRGQDSD SISSSSSDSL GSSSSSGSRR ENSBTAP00000016807/1-1835 TTSDSSPTLS RRPLRGGWAP TSWGRGQDSD SISSSSSDSL GSSSSSGSRR bmy_08684T0/1-1892 TTSDSSPTLS RRPLRGGWAP TSWGRGQDSD SISSSSSDSL GSSSSSGSRR ENSTTRP00000011460/1-1222 TTSD-SLNLS RRPLRGGWAP TSWGRGQDSD SISSSSSDSL GSSSSSGSRR 1301 1350 ENSP00000381693/1-1842 ASASGGARAK TVEVGRYKGR RPESHAPHVP NQPSEAAAHF YFELAKTVLI ENSBTAP00000016807/1-1835 ASASGGARAK TVEVGRYKGR RPESHAPHVP NQPSEAAAHF YFELAKTVLI bmy_08684T0/1-1892 ASASGGARAK TVEVGRYKGR RPESHAPHVP NQPSEAAAHF YFELAKTVLI ENSTTRP00000011460/1-1222 ASASGGARAK TVEVGRYKGR RPESHAPHVP NQPSEAAAHF YFELAKTVLI 1351 1400 ENSP00000381693/1-1842 KAGGNSSTSI FTHPSSSGGH QGPHRNLHLC AFEIGLYALG LHNFVSPNWL ENSBTAP00000016807/1-1835 KAGGNSSTSI FTHPSSSGGH QGPHRNLHLC AFEIGLYALG LHNFVSPNWL bmy_08684T0/1-1892 KAGGNSSTSI FTHPSSSGGH QGPHRNLHLC AFEIGLYALG LHNFVSPNWL ENSTTRP00000011460/1-1222 KAGGNSSTSI FTHPSSSGGH QGPHRNLHLC AFEIGLYALG LHNFVSPNWL 1401 1450 ENSP00000381693/1-1842 SRTYSSHVSW ITGQAMEIGS AALTILVECW DGHLTPPEVA SLADRASRAR ENSBTAP00000016807/1-1835 SRTYSSHVSW ITGQAMEIGS AALTILVECW DGHLTPPEVA SLADRASRAR bmy_08684T0/1-1892 SRTYSSHVSW ITGQAMEIGS AALTILVECW DGHLTPPEVA SLADRASRAR ENSTTRP00000011460/1-1222 SRTYSSHVSW ITGQAMEIGS AALTILVECW DGHLTPPEVA SLADRASRAR 1451 1500 ENSP00000381693/1-1842 DSNMVRAAAE LALSCLPHAH ALNPNEIQRA LVQCKEQDNL MLEKACMAVE ENSBTAP00000016807/1-1835 DSNMVRAAAE LALSCLPHAH ALNPNEIQRA LVQCKEQDNL MLEKACMAVE bmy_08684T0/1-1892 DSNMVRAAAE LALSCLPHAH ALNPNEIQRA LVQCKEQDNL MLEKACMAVE ENSTTRP00000011460/1-1222 DSNMVRAAAE LALSCLPHAH ALNPNEIQRA LVQCKEQDNL MLEKACMAVE 1501 1550 ENSP00000381693/1-1842 EAAKGGGVYP EVLFEVAHQW FWLYEQTAGG SSTAREGATS CSASGIRAGG ENSBTAP00000016807/1-1835 EAAKGGGVYP EVLFEVAHQW FWLYEQTAGG SSTAREGATS CSASGIRAAG bmy_08684T0/1-1892 EAAKGGGVYP EVLFEVAHQW FWLYEQTAGG SSTAREGATS CSASGIRAAG ENSTTRP00000011460/1-1222 EAAKGGGVYP EVLFEVAHQW FWLYEQTAGG SSTAREGATS CSASGIRAAG 1551 1600 ENSP00000381693/1-1842 EAGRGMPEGR GGPGTEPVTV -AAAAVTAAA TVVPVISVGS SLYPGPGLGH ENSBTAP00000016807/1-1835 EAGRGLPEGR GGPGTEPVTV --AAAAVTAA TVVPVISVGS SLYPGPGLGH bmy_08684T0/1-1892 EAGRGLPEGR GGPGTEPVTV AAAAAAVTAA TVVPVISVGS SLYPGPGLGH ENSTTRP00000011460/1-1222 EAGRGLPEGR GVPGTEPVTV AAAAAAVTAA TVVPVISVGS SLYPGPGLGH 1601 1650 ENSP00000381693/1-1842 GHSPGLHPYT ALQPHLPCSP QYLTHPAHPA HPMPHMPRPA VFPVPSSAYP ENSBTAP00000016807/1-1835 GHSPGLHPYT ALQPHLPCSP QYLTHPAHPA HPMPHMPRPA VFPVASSAYP bmy_08684T0/1-1892 GHSPGLHPYT ALQPHLPCSP QYLTHPAHPA HPMPHMPRPA VFPVPSSAYP ENSTTRP00000011460/1-1222 GHSPGLHPYT ALQPHLPCSP QYLTHPAHPA HPMPHMPRPA VFPVPSSAYP 1651 1700 ENSP00000381693/1-1842 QGVHPAFLGA QYPYSVTPPS LAATAVSFPV PSMAPITVHP YHTEPGLPLP ENSBTAP00000016807/1-1835 QGVHPAFLGA QYPYSVTPPS LAATAVSFPV PSMAPITVHP YHTEPGLPLP bmy_08684T0/1-1892 QGVHPAFLGA QYPYSVTPPS LAATAVSFPV PSMAPITVHP YHTEPGLPLP ENSTTRP00000011460/1-1222 QGVHPAFLGA QYPYSVTPPS LAATAVSFPV PSMAPITVHP YHTEPGLPLP 1701 1750 ENSP00000381693/1-1842 TSVACELWGQ GTVSSVHPAS TFPAIQGASL PALTTQPSPL VSGGFPPPEE ENSBTAP00000016807/1-1835 TSVA------ --LSSVHPAS TFPAIQGASL PALTTQPSPL VSGGFPPPEE bmy_08684T0/1-1892 TSVACELWGQ GTVSSVHPAS TFPAIQGASL PALPTQPSPL VSGGFPPPEE ENSTTRP00000011460/1-1222 TSVACELWGQ GTVSSVHPAS TFPAIQGASL PALPTQPSPL VSGGFPPPEE 1751 1800 ENSP00000381693/1-1842 ETHSQPVNPH SLHHLHAAYR VGMLALEMLG RRAHNDHPNN FSRSPPYTDD ENSBTAP00000016807/1-1835 ETHSQPVNPH SLHHLHAAYR VGMLALEMLG RRAHNDHPNN FSRSPPYTDD bmy_08684T0/1-1892 ETHSQPVNPH SLHHLHAAYR VGMLALEMLG RRAHNDHPNN FSRSPPYTDD ENSTTRP00000011460/1-1222 ETHSQPVNPH SLHHLHAAYR VGMLALEMLG RRAHNDHPNN FSRSPPYTDD 1801 1850 ENSP00000381693/1-1842 VKWLLGLAAK LGVNYVHQFC VGAAKGVLSP FVLQEIVMET LQRLSPAHAH ENSBTAP00000016807/1-1835 VKWLLGLAAK LGVNYVHQFC VGAAKGVLSP FVLQEIVMET LQRLSPAHAH bmy_08684T0/1-1892 VKWLLGLAAK LGVNYVHQFC VGAAKGVLSP FVLQEIVMET LQRLSPAHAH ENSTTRP00000011460/1-1222 VKWLLGLAAK LGVNYVHQFC VGAAKGVLSP FVLQEIVMET LQRLSPAHAH 1851 1900 ENSP00000381693/1-1842 NHLRAPAFHQ LVQRCQQAYM QYIHHRLIHL TPADYDDFVN AIRSARSAFC ENSBTAP00000016807/1-1835 NHLRAPAFHQ LVQRCQQAYM QYIHHRLIHL TPADYDDFVN AIRSARSAFC bmy_08684T0/1-1892 NHLRAPAFHQ LVQRCQQAYM QYIHHRLIHL TPADYDDFVN AIRSARSAFC ENSTTRP00000011460/1-1222 NHLRAPAFHQ LVQRCQQAYM QYIHHRLIHL TPADYDDFVN AIRSARSAFC 1901 1950 ENSP00000381693/1-1842 LTPMGMMQFN DILQNLKRSK QTKELWQRVS LEMATFSP ENSBTAP00000016807/1-1835 LTPMGMMQFN DILQNLKRSK QTKELWQRVS LEMTTFSP bmy_08684T0/1-1892 LTPMGMMQFN DILQNLKRSK QTKELWQRVS LEMTTFSP ENSTTRP00000011460/1-1222 LTPMGMMQFN DILQNLKRSK QTKELWQRVS LEMTTFSP