KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 4 Type: P Thu May 15 16:59:48 2014 Check: 00 .. Name: bmy_16667T0/1-608 Len: 663 Check: 259 Weight: 1.00 Name: BACU001322/1-502 Len: 663 Check: 5219 Weight: 1.00 Name: ENSTTRP00000011466/1-535 Len: 663 Check: 3697 Weight: 1.00 Name: ENSBTAP00000016830/1-621 Len: 663 Check: 7908 Weight: 1.00 // 1 50 bmy_16667T0/1-608 MATTVTCTRF TDEYQLYEDI GKGAFSVVRR CVKLCTGHEY AAKIINTKKL BACU001322/1-502 ---------- ---------- -MG------- ----REVTDY QEE---QGRL ENSTTRP00000011466/1-535 ---------- ---------- --GAFSVVRR CVKKTSTQEY AAKIINTKKL ENSBTAP00000016830/1-621 ---------- ---------- -RGAFSVVRR CVKKTSTQEY AAKIINTKKL 51 100 bmy_16667T0/1-608 SARDHQKLER EARICRLLKH SNIVRLHDSI SEEGFHYLVF DLVTGGELFE BACU001322/1-502 CEADHQKLER EARICRLLKH PNIVRLHDSI SEEGFHYLVF DLVTGGELFE ENSTTRP00000011466/1-535 SARDHQKLER EARICRLLKH PNIVRLHDSI SEE-FHYLVF DLVTGGELFE ENSBTAP00000016830/1-621 SARDHQKLER EARICRLLKH PNIVRLHDSI SEEGFHYLVF DLVTGGELFE 101 150 bmy_16667T0/1-608 DIVAREYYSE ADASHCIQQI LEAVLHCHQM GVVHRDLKPE NLLLASKCKG BACU001322/1-502 DIVAREYYSE ADASHCIHQI LESVNHIHQH DIVHRDLKPE NLLLASKCKG ENSTTRP00000011466/1-535 DIVAREYYSE ADASHCIHQI LESVNHIHQH DIVHRDLKPE NLLLASKCKG ENSBTAP00000016830/1-621 DIVAREYYSE ADASHCIHQI LESVNHIHQH DIVHRDLKPE NLLLASKCKG 151 200 bmy_16667T0/1-608 AAVKLADFGL AIEVQGDQQA WFGFAGTPGY LSPEVLRKEA YGKPVDIWAC BACU001322/1-502 AAVKLADFGL AIEVQGEQQA WFGFAGTPGY LSPEVLRKDP YGKPVDIWAC ENSTTRP00000011466/1-535 AAVKLADFGL AIEVQGEQQA WFGFAGTPGY LSPEVLRKDP YGKPVDIWAC ENSBTAP00000016830/1-621 AAVKLADFGL AIEVQGEQQA WFGFAGTPGY LSPEVLRKDP YGKPVDIWAC 201 250 bmy_16667T0/1-608 GVILYILLVG YPPFWDEDQH KLYQQIKAGA YDFPSPEWDT VTPEAKNLIN BACU001322/1-502 GVILYILLVG YPPFWDEDQH KLYQQIKAGA YDFPSPEWDT VTPEAKNLIN ENSTTRP00000011466/1-535 GVILYILLVG YPPFWDEDQH KLYQQIKAGA YDFPSPEWDT VTPEAKNLIN ENSBTAP00000016830/1-621 GVILYILLVG YPPFWDEDQH KLYQQIKAGA YDFPSPEWDT VTPEAKNLIN 251 300 bmy_16667T0/1-608 QMLTINPAKR IAAHEALKHP WVCQRSTVAS MMHRQETVEC LKKFNARRKL BACU001322/1-502 QMLTINPAKR ITADQALKHP WVCQRSTVAS MMHRQETVEC LRKFNARRKL ENSTTRP00000011466/1-535 QMLTINPAKR ITADQALKHP WVCQRSTVAS MMHRQETVEC LRKFNARRKL ENSBTAP00000016830/1-621 QMLTINPAKR ITADQALKHP WVCQRSTVAS MMHRQETVEC LRKFNARRKL 301 350 bmy_16667T0/1-608 KGAILTTMLA TRNFS----- ---------- ---------- -VGRQTTAPA BACU001322/1-502 KGAILTTMLV SRNFS----- ---------- ---------- ---------- ENSTTRP00000011466/1-535 KGAILTTMLV SRNFS----- ---------- ---------- ---------- ENSBTAP00000016830/1-621 KGAILTTMLV SRNFSGMCSA TMLKIFSVIP TLCALRDCIP SVGRQSSAPA 351 400 bmy_16667T0/1-608 TMSTAASGTT MGLVEQAAKS LLNKKAD-GV K--------- --PQTNSTKN BACU001322/1-502 ---------- ------AAKS LLNKKSDGGV K--------- ---------- ENSTTRP00000011466/1-535 ---------- ------AAKS LLNKKSDGGV KKRKSSSSVH LMPQSNN-KN ENSBTAP00000016830/1-621 SPAASAA--- -GLAGQAAKS LLNKKSDGGV K--------- --PQSNN-KN 401 450 bmy_16667T0/1-608 SAAATSPKGT LPPAALEPQS TVIHNPVDGI KESSDSTHTT IEDEDTKA-- BACU001322/1-502 ---------- ------EPQT TVVHNATDGI KGSTESCNTT TEDEDLKA-- ENSTTRP00000011466/1-535 SLVSPAQEPA PLQTAMEPQT TVVHNATDGI KGSTESCNTT TEDEDLKG-- ENSBTAP00000016830/1-621 SLVSPAQEPA PLQTAMEPQT TVVHNATDGI KGSTESCNTT TEDEDLKAAP 451 500 bmy_16667T0/1-608 ------PRVP DILSSVRRGS GTPEGEGPPP CPSPAPISPL PTPSPRICDI BACU001322/1-502 ---------- -SRSCEER-- ---------- ---------- -----LVAWA ENSTTRP00000011466/1-535 -------SVP EGRSSRDR-T APSAGMQPQP SLCSSA---- ---------- ENSBTAP00000016830/1-621 LRTGNGSSMP EGRSSRDR-T APSAGMQPQP SLCSSASSHL SCSLSLMAWA 501 550 bmy_16667T0/1-608 LSSVRRGSGT PEAE----GP PPT-----PS RKQEIIKITE QLIEAVNNGD BACU001322/1-502 GLGLRSGLAR AQYEASLTLA VPSANSGAPL RKQEIIKITE QLIEAINNGD ENSTTRP00000011466/1-535 ---------- ---------- ---------M RKQEIIKITE QLIEAINNGD ENSBTAP00000016830/1-621 SLGLRSGLGW ASLA----LA APSANSGAPL RKQEIIKITE QLIEAINNGD 551 600 bmy_16667T0/1-608 FEAYAKICDP GLTSFEPEAL GNLVEGMDFH RFYFENLLAK NSKPIHTTIL BACU001322/1-502 FEAYTKICDP GLTSFEPEAL GNLVEGMDFH KFYFENLLSK NSKPIHTTIL ENSTTRP00000011466/1-535 FEAYTKICDP GLTSFEPEAL GNLVEGMDFH KFYFENLLSK NSKPIHTTIL ENSBTAP00000016830/1-621 FEAYTKICDP GLTSFEPEAL GNLVEGMDFH KFYFENLLSK NSKPIHTTIL 601 650 bmy_16667T0/1-608 NPHVHVIGED AACIAYIRLT QYIDGQGRPR TSQSEETRVW HRRDGKWQNV BACU001322/1-502 NPHVHVIGED AACIAYIRLT QYIDGQGRPR TSQSEETRVW HRRDGKWLNV ENSTTRP00000011466/1-535 NPHVHVIGED AACIAYIRLT QYIDGQGRPR TSQSEETRVW HRRDGKWLNV ENSBTAP00000016830/1-621 NPHVHVIGED AACIAYIRLT QYIDGQGRPR TSQSEETRVW HRRDGKWLNV 651 700 bmy_16667T0/1-608 HFHCSGAPVA PLQ BACU001322/1-502 HYHCSGAPAA PLQ ENSTTRP00000011466/1-535 HYHCSGAPAA PLQ ENSBTAP00000016830/1-621 HYHCSGAPAA PLQ