KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 16:59:49 2014 Check: 00 .. Name: ENSTTRP00000003577/1-493 Len: 538 Check: 4093 Weight: 1.00 Name: ENSP00000423665/1-504 Len: 538 Check: 6371 Weight: 1.00 Name: ENSBTAP00000016835/1-471 Len: 538 Check: 1915 Weight: 1.00 Name: bmy_02386T0/1-486 Len: 538 Check: 153 Weight: 1.00 Name: BACU009875/1-490 Len: 538 Check: 1917 Weight: 1.00 // 1 50 ENSTTRP00000003577/1-493 ---------- ---------- ---------- ----LIMNKM KNFKRRFSLS ENSP00000423665/1-504 ---------- ---------- ---------- ----MIMNKM KNFKRRFSLS ENSBTAP00000016835/1-471 ---------- ---------- ---------- ------MSKM KNFKRRFSLS bmy_02386T0/1-486 MGRPRIHIWC RLDPLPCSHP LFSLLSQDPA ACCLLIMNKM KNFKRRFSLS BACU009875/1-490 ---------- -------MLR LLTGFLQDPA ACCLLIMNKM KNFKRRFSLS 51 100 ENSTTRP00000003577/1-493 VPRTETIEES LVEFTEQFNQ LHSRHNEGLQ LHPLGRDPQP ESSTFSPADR ENSP00000423665/1-504 VPRTETIEES LAEFTEQFNQ LHNRRNENLQ LGPLGRDPPQ ECSTFSPTDS ENSBTAP00000016835/1-471 VPRTETIEES LAEFTEQFNQ LHNRRNEDLQ LGPLGGDPQP ESSTFSPTDS bmy_02386T0/1-486 VPRTETIEES LAEFTEQFNQ LHNRRNEGLQ LRPLDRDPQP ESSTFSPADR BACU009875/1-490 VPRTETIEES LAEFTEQFNQ LHNRRNEGLQ LRPLDRDPQP ESSTFSPTDR 101 150 ENSTTRP00000003577/1-493 GEDPGQLSPG MQY-RRQNQR RFSMEVRGSA ------LRHI HRCMPGKVVA ENSP00000423665/1-504 GEEPGQLSPG VQFQRRQNQR RFSMEVRASG ALPRQVAGCT HKGVHRRAAA ENSBTAP00000016835/1-471 GKDLGQLSPG VQY-RRQNQR RFSME----- ---------- ---------- bmy_02386T0/1-486 EEDPGQLSPG MQY-RRQNQR RFSME----- ---------- ---------- BACU009875/1-490 GEDPGQLSPG MQY-RRQNQR RFSTE----- ---------- ---------- 151 200 ENSTTRP00000003577/1-493 LEPDFDISKR LSLPMDIRLP QEFLQKLQLE SPDLPKPLTR MSRRASLSDI ENSP00000423665/1-504 LQPDFDVSKR LSLPMDIRLP QEFLQKLQME SPDLPKPLSR MSRRASLSDI ENSBTAP00000016835/1-471 -----DISKR LSLPMDIRLP QEFLQKLQLE SPDLPKPLTR MSRRASLSDI bmy_02386T0/1-486 -----DISKR LSLPMDIRLP QEFLQKLQLE SPDLPKPLTR MSRRASLSDI BACU009875/1-490 -----DISKR LSLPMDIRLP QEFLQKLQLE SPDLPKPLTR MSRRASLSDI 201 250 ENSTTRP00000003577/1-493 GFGKLETYVK LDKLGEGTYA TVFKGRSKLT ENLVALKEIR LEHESA-PCT ENSP00000423665/1-504 GFGKLETYVK LDKLGEGTYA TVFKGRSKLT ENLVALKEIR LEHEEGAPCT ENSBTAP00000016835/1-471 GFGKLETYVK LDKLGEGTYA TVFKGRSKLT ENLVALKEIR LEHEEGAPCT bmy_02386T0/1-486 GFGKLETYVK LDKLGEGTYA TVFKGRSKLT ENLVALKEIR LEHEEGAPCT BACU009875/1-490 GFGKLETYVK LDKLGEGTYA TVFKGRSKLT ENLVALKEIR LEHEEGAPCT 251 300 ENSTTRP00000003577/1-493 AIREVSLLRN LKHANIVTLH DLIHTERSLT LVFEYLXXXX XXXXXXXXXX ENSP00000423665/1-504 AIREVSLLKN LKHANIVTLH DLIHTDRSLT LVFEYLDSDL KQYLDHCGNL ENSBTAP00000016835/1-471 AIREVSLLRN LKHANIVTLH DLVHTERSLT LVFEYLDRDL KQYLDHCGNL bmy_02386T0/1-486 AIREVSLLRN LKHANIVTLH DLIHTERSLT LVFEYL---- ---------- BACU009875/1-490 AIREVSLLRN LKHANIVTLH DLIHTERSLT LVFEYLDSDL KQYLDHCGNL 301 350 ENSTTRP00000003577/1-493 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXL ENSP00000423665/1-504 MSMHNVKIFM FQLLRGLAYC HHRKILHRDL KPQNLLINER GELKLADFGL ENSBTAP00000016835/1-471 MSMHNVKIFM FQLLRGLAYC HRRKILHRDL KPQNLLINER GELKLADFGL bmy_02386T0/1-486 -------IFM FQLLRGLAYC HRRKILHRDL KPQNLLINER GELKLADFGL BACU009875/1-490 MSMHNVKIFM FQLLRGLAYC HRRKILHRDL KPQNLLINER GELKLADFGL 351 400 ENSTTRP00000003577/1-493 ARTKSVPTKT -SNEVVT-WY R-PDVLLGST EYSTPIDMWG VGCIHYEMAT ENSP00000423665/1-504 ARAKSVPTKT YSNEVVTLWY RPPDVLLGST EYSTPIDMWG VGCIHYEMAT ENSBTAP00000016835/1-471 ARAKSVPTKT YSNEVVTLWY RPPDVLLGST EYSTPLDMWG VGCIQYEMAT bmy_02386T0/1-486 ARAKSVPTKT YSNEVVTLWY RPPDVLLGST EYSTPIDMWG VGCIHYEMAT BACU009875/1-490 ARAKSVPTKT YSNEVVTLWY RPPDVLLGST EYSTPIDMWG VGCIHYEMAT 401 450 ENSTTRP00000003577/1-493 GRPLFPGSTV KEELHLIFRL LGTPTEETWP GVMALSEFRA YNFPQYLPQP ENSP00000423665/1-504 GRPLFPGSTV KEELHLIFRL LGTPTEETWP GVTAFSEFRT YSFPCYLPQP ENSBTAP00000016835/1-471 GRPLFPGSTV KEELHLIFRL LGTPTEETWP GVMALTEFRA YNFPRYLPQP bmy_02386T0/1-486 GRPLFPGSTV KEELHLIFRL LGTPTEETWP GVLALSEFRA YNFPRYLPQP BACU009875/1-490 GRPLFPGSTV KEELHLIFRL LGTPTEETWP GVMALSEFRA YNFPRYLPQP 451 500 ENSTTRP00000003577/1-493 LISHAPRLDT DGINLLTGLL LYESKSRVSA EAALRHPYFR SLGERVHQLE ENSP00000423665/1-504 LINHAPRLDT DGIHLLSSLL LYESKSRMSA EAALSHSYFR SLGERVHQLE ENSBTAP00000016835/1-471 LLSHVPRLDP DGINLLSSLL LYESKSRVSA EAALRHPYFR SLGERVHQLE bmy_02386T0/1-486 LISHAPRLDT DGINLLTGLL LYESKSRVSA EAALRHPYFR SLGERVHQLE BACU009875/1-490 LISHAPRLDT DGINLLTGLL LYESKSRVSA EAALRHPYFR SLGERVHQLE 501 550 ENSTTRP00000003577/1-493 DTASIFSLKE IQLQKDPGYR GLAFQQPGRG KSRRQSIF ENSP00000423665/1-504 DTASIFSLKE IQLQKDPGYR GLAFQQPGRG KNRRQSIF ENSBTAP00000016835/1-471 DTASLFSLKE IQLQKDPGYR GLAFQQPGRG KNRRQSIF bmy_02386T0/1-486 DTASIFSLKE IQLQKDPGYR GLAFQQPGRG KSRRQSIF BACU009875/1-490 DTASIFSLKE IQLQKDPGYR GLAFQQPGRG KSRRQSIF