KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 16:59:49 2014 Check: 00 .. Name: ENSTTRP00000005449/1-634 Len: 654 Check: 9692 Weight: 1.00 Name: ENSP00000374029/1-636 Len: 654 Check: 6367 Weight: 1.00 Name: ENSBTAP00000016836/1-609 Len: 654 Check: 2693 Weight: 1.00 Name: bmy_10533T0/1-554 Len: 654 Check: 4500 Weight: 1.00 Name: BACU013100/1-630 Len: 654 Check: 2003 Weight: 1.00 // 1 50 ENSTTRP00000005449/1-634 MEGRGPYRIY DPGGGVPLGE VSAAFERLVE ENSRLKEKMQ GIKMLGELLE ENSP00000374029/1-636 MEGRGPYRIY DPGGSVPSGE ASAAFERLVK ENSRLKEKMQ GIKMLGELLE ENSBTAP00000016836/1-609 MEGRGPYRIY DPGGGVPLGE ASSAFERLVE ENSRLKEKMQ GIKMLGELLE bmy_10533T0/1-554 MEGRGPYRIY DPGGGVPLGE ASAAFERLVE ENSRLKEKMQ GIKMLGELLE BACU013100/1-630 MEGRGPYRIY DPGGGVPLGE ASAAFERLVE ENSRLKEKMQ GIKMLGELLE 51 100 ENSTTRP00000005449/1-634 ESQMEASRLR QKAEELVKDS ELLPPPSPSL ASF------- ---DHLAEL- ENSP00000374029/1-636 ESQMEATRLR QKAEELVKDN ELLPPPSPSL GSF------- ---DPLAEL- ENSBTAP00000016836/1-609 ESQMEASRLR QKAEELVKDS EPLPPSSPSL ASF------- ---NDLAEL- bmy_10533T0/1-554 ESQMEASRLR QKAEELVKDS ELLPPPSPSL TSF------- ---DHLAEL- BACU013100/1-630 ESQMEASRLR QKAEELVKDT ELLPLPSPSS TTWLSSQAAG HSPSHVLAIE 101 150 ENSTTRP00000005449/1-634 --TGKDADVP ATPADPAHPS DKPEPVPKPP ASSTSSEFEV VPAEGHSSPE ENSP00000374029/1-636 --TGKDSNVT ASPTAPACPS DKPAPVQKPP SSGTSSEFEV VTPEEQNSPE ENSBTAP00000016836/1-609 --AGKDTAVP ATPADPAHPS DKPEPVPKPP SSNTSSEFEV VPTEGPSSPE bmy_10533T0/1-554 --TGKDADVP ATPADPAHPS DKPEP----- --STSSEFEV VPAEGHSSPE BACU013100/1-630 SPEGKDADVP ATPADPAHPS DKPEPVPKPP ASSTSSEFEV VPAEGHSSPE 151 200 ENSTTRP00000005449/1-634 SGGHTRNTMX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX ENSP00000374029/1-636 SSSHA-NAMA LGPLPREDGN LMLHLQRLET TLSVCAEEPD HGQLFTHLGR ENSBTAP00000016836/1-609 SSGHTRNTME LGPLPQEDST LMLHLQRLET TLSVCAEEPD HSQLFTHLGR bmy_10533T0/1-554 SGGHTRNTME LGPLPHEDSN LMLHLQRLET TLSVCAEEPD HSQLFTHLGR BACU013100/1-630 SGGHTRNTME LGPLPHEDSN LMLHLQRLET TLSVCAEEPD HSQLFTHLGR 201 250 ENSTTRP00000005449/1-634 XXXEFNRLAS KVHKNEQRTS ILQTLCEQLR KENEALKTKL DKGLEQRDQA ENSP00000374029/1-636 MALEFNRLAS KVHKNEQRTS ILQTLCEQLR KENEALKAKL DKGLEQRDQA ENSBTAP00000016836/1-609 MALEFNRLAS KVHKNEQRTS ILQTLCEQLR KENEALKSKL DKGLEQRDQA bmy_10533T0/1-554 MALEFNRLAS KVHKNEQRTS ILQTLCEQLR KENEALKAKL DKGLEQRDQA BACU013100/1-630 MALEFNRLAS KVHKNEQRTS ILQTLCEQLR KENEALKAKL DKGLEQRDQA 251 300 ENSTTRP00000005449/1-634 AERLREENLE LRKLLMSSG- KDGASRWPGS PKTEGTGKKG AAAQQQAGVT ENSP00000374029/1-636 AERLREENLE LKKLLMSNGN KEGASGRPGS PKMEGTGKKA VAGQQQASVT ENSBTAP00000016836/1-609 AERLREENLE LRKLLMSSS- KDGASGRPGS PKMEGAGKKG AAAPQQAGVT bmy_10533T0/1-554 AERLRPDAL- ---------- ----IALPG- ---------- ----KKAGVT BACU013100/1-630 AERLREENLE LRKLLMSSG- KDGASRWPGS PKTEGTGKKG AAAQQQAGVT 301 350 ENSTTRP00000005449/1-634 AGKVPEVGAL GAAEKKVRML EQQRTELLEV NKQWDQHFRS MKQQYEQKIT ENSP00000374029/1-636 AGKVPEVVAL GAAEKKVKML EQQRSELLEV NKQWDQHFRS MKQQYEQKIT ENSBTAP00000016836/1-609 TSKIPEVGSL GAAEKKVRML EQQRTELLEV NKQWDQHFRS MKQQYEQKIT bmy_10533T0/1-554 AGKVPEVGAL GAAEKKVRML EQQRTELLEV NKQWDQHFRS MKQQYEQK-- BACU013100/1-630 AGKVPEVGAL GAAEKKVRML EQQRTELLEV NKQWDQHFRS MKQQYEQKIT 351 400 ENSTTRP00000005449/1-634 ELRQKLADLQ KQVTDLEAER EQKQRDFDRK LLLAKSKIEM EE----TDKE ENSP00000374029/1-636 ELRQKLADLQ KQVTDLEAER EQKQRDFDRK LLLAKSKIEM EE----TDKE ENSBTAP00000016836/1-609 ELRQKLADLQ KQVTDLEAER EQKQRDFDRK LLLAKSKIEM EE----TDRE bmy_10533T0/1-554 ---------- ---------- ---------- ---------- ------TDKE BACU013100/1-630 ELRQKLADLQ KQVTDLEAER EQKQRDFDRK LLLAKSKIEM EEASVTTDKE 401 450 ENSTTRP00000005449/1-634 QLTAEAKELR QKVKYLQDQL SPLTRQREYQ EKEIQRLNKA LEEALSIQAS ENSP00000374029/1-636 QLTAEAKELR QKVKYLQDQL SPLTRQREYQ EKEIQRLNKA LEEALSIQTP ENSBTAP00000016836/1-609 HLTAEAKELR QKVKYLQDQL SPLTRQREYQ EKEIQRLNKA LEEALSIQAS bmy_10533T0/1-554 QLTAEAKELR QKVKYLQDQL SPLTRQREYQ EKEIQRLNKA LEEALSIQAS BACU013100/1-630 QLTAEAKELR QKVKYLQDQL SPLTRQREYQ EKEIQRLNKA LEEALSIQAS 451 500 ENSTTRP00000005449/1-634 PSSPAAAFGN PEGAGGLLRK QELVTQNELL KQQVKIFEED FQRERSDRER ENSP00000374029/1-636 PSSPPTAFGS PEGAGALLRK QELVTQNELL KQQVKIFEED FQRERSDRER ENSBTAP00000016836/1-609 PSSP-TAFGS PEGAGGLLRK QELLTQNELL KQQVKIFEED FQRERSDRER bmy_10533T0/1-554 PSSPATAFGS PEGAGGLLRK QELVTQNELL KQQVKIFEED FQRERSDRER BACU013100/1-630 PSSPATAFGS PEGAGGLLRK QELVTQNELL KQQVKIFEED FQRERSDRER 501 550 ENSTTRP00000005449/1-634 MNEEKEELKK QVEKLQAQVT LSHAQLKAFK DEERAKDALR QQKRKAKTSA ENSP00000374029/1-636 MNEEKEELKK QVEKLQAQVT LSNAQLKAFK DEEKAREALR QQKRKAKASG ENSBTAP00000016836/1-609 MNEEKEELKK QVEKLQAQVT LSHAQLKAFK DEEKAKDALR QQKRKAKTSA bmy_10533T0/1-554 MNEEKEELKK QVEKLQAQVT LSHAQLKAFK DEERAKDALR QQKRKAKTSA BACU013100/1-630 MNEEKEELKK QVEKLQAQVT LSHAQLKAFK DEERAKDALR QQKRKAKTSA 551 600 ENSTTRP00000005449/1-634 DRYHLEPHLE HLYGAYPYAY PPVPQVVPHR GFEDWSQIRY PPPPTAMEHP ENSP00000374029/1-636 ERYHVEPHPE HLCGAYPYAY PPMPAMVPHH GFEDWSQIRY PPPPMAMEHP ENSBTAP00000016836/1-609 DRYHLEPHPE HLCGACPYAY PPMPPIGPPP GFEDWSQIRY PPPPTAMEHP bmy_10533T0/1-554 DRYHVEPHPE HLFGAYPYAY PPMPPVVPHR GFEDWSQVRY PPPPTAMEHP BACU013100/1-630 DRYHVEPHPE HLFGAYPYAY PPMPPVVPHR GFEDWSQVRY PPPPTAMEHP 601 650 ENSTTRP00000005449/1-634 PQLPNSRLFH LPEYTWRLPC GGVH--NQSS QVMGSPTARP TEPEPTKNDR ENSP00000374029/1-636 PPLPNSRLFH LPEYTWRLPC GGVRNPNQSS QVMDPPTARP TEPESPKNDR ENSBTAP00000016836/1-609 PPLPNSRLFR L-----NTPG GCP----VEG YVIRAPK--- ---------- bmy_10533T0/1-554 PPLPNSRLFH LPEYTWRLPC GGIR--SQSS QVMGSPTARP TEPESTKNDR BACU013100/1-630 PPLPNSRLFH LLFSHDRSLH ASL----NTG VYCGA----- ---------- 651 700 ENSTTRP00000005449/1-634 EGPQ ENSP00000374029/1-636 EGPQ ENSBTAP00000016836/1-609 ---- bmy_10533T0/1-554 EGPQ BACU013100/1-630 ----