KEY:
    ENSP* - Homo sapiens (Human)
    ENSBTA* - Bos taurus (Cow)
    ENSTTR* - Tursiops truncatus (Dolphin)
    bmy_* - Balaena mysticetus (Bowhead whale)
    BACU* - Balaenoptera acutorostrata (Minke whale)

Copy from below the line for a valid .msf file.

----------------------------------------------------------------------------------
                
NoName   MSF: 5  Type: P  Thu May 15 16:59:51 2014  Check: 00 ..

 Name: ENSTTRP00000015300/1-204  Len:    208  Check:  8320  Weight:  1.00
 Name: bmy_07485T0/1-208         Len:    208  Check:  316  Weight:  1.00
 Name: BACU015019/1-198          Len:    208  Check:  5981  Weight:  1.00
 Name: ENSP00000380524/1-208     Len:    208  Check:  8608  Weight:  1.00
 Name: ENSBTAP00000016852/1-208  Len:    208  Check:  9236  Weight:  1.00

//


                          1                                                   50
ENSTTRP00000015300/1-204  MAGTPRHDRE MAIQAKQKLT MTTDPIERLR LQCLARGSAG IKGLGRAFRI 
bmy_07485T0/1-208         MAGTARHDRE MVIQAKKKLT TATDPIERLR LQCLARGSSG IKGLGRVFRV 
BACU015019/1-198          ---------- MAIQAKKKLT TATDPIERLR LQCLARGSAG IKGLGRVFRI 
ENSP00000380524/1-208     MAGTARHDRE MAIQAKKKLT TATDPIERLR LQCLARGSAG IKGLGRVFRI 
ENSBTAP00000016852/1-208  MAGTARHDRE MAIQAKKKLT VATDPIERLR LQCLARGSAG IKGLGRVFRI 


                          51                                                 100
ENSTTRP00000015300/1-204  MDDNNNRTLD F-EFVKGLND YAVVMEKEEA -ELFQRSD-D GNG-IDFNXX 
bmy_07485T0/1-208         MDDNNNRTLD FKEFVKGLND YAVVMEKEEA EELFRRFDKD GNGTMDFNEF 
BACU015019/1-198          MDDNNNRTLD FKEFVKGLND YAVVMEKEEA EELFRRFDKD GNGTIDFNEF 
ENSP00000380524/1-208     MDDDNNRTLD FKEFMKGLND YAVVMEKEEV EELFRRFDKD GNGTIDFNEF 
ENSBTAP00000016852/1-208  MDDNNNRTLD FKEFVKGLND YAVVMEKEEA EELFRRFDKD GNGTIDFNEF 


                          101                                                150
ENSTTRP00000015300/1-204  XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX 
bmy_07485T0/1-208         LLTLRPPMSR ARKEVIMQAF RKLDKTGDGM ITIEDFREVY NAKHHPKYQN 
BACU015019/1-198          LLALRPPMSR ARKEVIMQAF RKLDKTGDGV ITIEDLREVY SAKQHPKYQN 
ENSP00000380524/1-208     LLTLRPPMSR ARKEVIMQAF RKLDKTGDGV ITIEDLREVY NAKHHPKYQN 
ENSBTAP00000016852/1-208  LLTLRPPMSR ARKEVIMQAF RKLDKTGDGV ITIEDLREVY NAKHHPKYQN 


                          151                                                200
ENSTTRP00000015300/1-204  XXXXXXXXXX XXXXXXXXXX XXXXXVTPEE FMNYYAGVSA STDTDVYFII 
bmy_07485T0/1-208         GEWTEEQVFQ KFLDNFDSPY DKDGVVTSEE FMNYYAGVSA SIDTDVYFIV 
BACU015019/1-198          GEWTEEQVFQ KFLDNFDSPY DKDGVVTPEE FMNYYAGVSA SIDTDVYFIV 
ENSP00000380524/1-208     GEWSEEQVFR KFLDNFDSPY DKDGLVTPEE FMNYYAGVSA SIDTDVYFII 
ENSBTAP00000016852/1-208  GEWTEEQVFR KFLDNFDSPY DKDGVVTPEE FMNYYAGVSA SIDTDVYFIV 


                          201                                                250
ENSTTRP00000015300/1-204  MMRTAWKL 
bmy_07485T0/1-208         MMRTAWKC 
BACU015019/1-198          MMRTACKR 
ENSP00000380524/1-208     MMRTAWKL 
ENSBTAP00000016852/1-208  MMRTAWKL