KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 16:59:52 2014 Check: 00 .. Name: ENSTTRP00000008607/1-1382 Len: 1382 Check: 6272 Weight: 1.00 Name: ENSP00000303830/1-1382 Len: 1382 Check: 7680 Weight: 1.00 Name: ENSBTAP00000016858/1-1382 Len: 1382 Check: 8314 Weight: 1.00 Name: bmy_17835T0/1-1096 Len: 1382 Check: 6433 Weight: 1.00 Name: BACU002555/1-1161 Len: 1382 Check: 581 Weight: 1.00 // 1 50 ENSTTRP00000008607/1-1382 MGAGGGRGAA VVPLLVAVAA LLVGAAGHLY PGEVCPGMDI RNNLTRLHEL ENSP00000303830/1-1382 MATGGRRGAA AAPLLVAVAA LLLGAAGHLY PGEVCPGMDI RNNLTRLHEL ENSBTAP00000016858/1-1382 CLPGGRVGKA THSYKPSMGC LLTCLALCLF ALPVCPGMDI RNNLTRLHEL bmy_17835T0/1-1096 ---------- ---------- ---------- ---------- ---------- BACU002555/1-1161 ---------- ---------- ---------- ---------- ---------- 51 100 ENSTTRP00000008607/1-1382 ANCSVIEGHL QILLMFKTRP EDFRDLSFPK LIMITDYLLL FRVYGLESLK ENSP00000303830/1-1382 ENCSVIEGHL QILLMFKTRP EDFRDLSFPK LIMITDYLLL FRVYGLESLK ENSBTAP00000016858/1-1382 ANCSVIEGHL QILLMFKTRP EDFRDLSFPK LIMITDYLLL FRVYGLESLK bmy_17835T0/1-1096 ---------- ---------- ---------- ---------- ---------- BACU002555/1-1161 ---------- ---------- ---------- ---------- ---------- 101 150 ENSTTRP00000008607/1-1382 DLFPNLTVIR GSRLFFNYAL VIFEMVHLKE LGLYNLMNIT RGSVRIEKNN ENSP00000303830/1-1382 DLFPNLTVIR GSRLFFNYAL VIFEMVHLKE LGLYNLMNIT RGSVRIEKNN ENSBTAP00000016858/1-1382 DLFPNLTVIR GSRLFFNYAL VIFEMVHLKE LGLYNLMNIT RGSVRIEKNN bmy_17835T0/1-1096 ---------- ---------- ---------- ---------- ---------- BACU002555/1-1161 ---------- ---------- ---------- ---------- ---------- 151 200 ENSTTRP00000008607/1-1382 ELCYLATIDW SRILDSVEDN YIVLNKDDNE ECGDICPGAA KGKTNCPATV ENSP00000303830/1-1382 ELCYLATIDW SRILDSVEDN YIVLNKDDNE ECGDICPGTA KGKTNCPATV ENSBTAP00000016858/1-1382 ELCYLATIDW SRILDSVEDN YIVLNKDDNE ECGDICPGTA KGKTNCPATV bmy_17835T0/1-1096 ---------- ---------- ---------- ---------- ---------- BACU002555/1-1161 ---------- ---------- ---------- ---------- ---------- 201 250 ENSTTRP00000008607/1-1382 INGQFVERCW THSHCQKVCP TICKSHGCTA EGLCCHSECL GNCSEPDDPT ENSP00000303830/1-1382 INGQFVERCW THSHCQKVCP TICKSHGCTA EGLCCHSECL GNCSQPDDPT ENSBTAP00000016858/1-1382 INGQFVERCW THSHCQKVCP TICKSHGCTS EGLCCHSECL GNCSEPDDPT bmy_17835T0/1-1096 ---------- -------VCP TICKSHGCTA EGLCCHSECL GNCSEPDDPT BACU002555/1-1161 ---------- -------VCP TICKSHGCTA EGLCCHSECL GNCSEPDDPT 251 300 ENSTTRP00000008607/1-1382 KCVACRNFYL DGRCVETCPP PYYHFQDWRC VNFSFCQDLH NKCKNSRRQG ENSP00000303830/1-1382 KCVACRNFYL DGRCVETCPP PYYHFQDWRC VNFSFCQDLH HKCKNSRRQG ENSBTAP00000016858/1-1382 KCVACRNFYL DGRCVETCPP PYYHFQDWRC VNFSFCQDLH NKCKNSRRQG bmy_17835T0/1-1096 KCVACRNFYL DGRCVETCPP PYYHFQDWRC VNFSFCQDLH NKCKNSRRQG BACU002555/1-1161 KCVACRNFYL DGRCVETCPP PYYHFQDWRC VNFSFCQDLH NKCKNSRRQG 301 350 ENSTTRP00000008607/1-1382 CHQYVIHNNK CIPECPSGYT MNSSXXXXXX XXXXXXXXXX XXXXXXXXXX ENSP00000303830/1-1382 CHQYVIHNNK CIPECPSGYT MNSSNLLCTP CLGPCPKVCH LLEGEKTIDS ENSBTAP00000016858/1-1382 CHQYVIHNNK CIPECPSGYT MNSSNLMCTP CLGPCPKVCH LLEGEKTIDS bmy_17835T0/1-1096 CHQYVIHNNK CIPECPSGYT MNSSNLMCTP CLGPCPKVCH LLEGEKTIDS BACU002555/1-1161 CHQYVIHNNK CIPECPSGYT MNSSNLMCTP CLGPCPKVCH LLEGEKTIDS 351 400 ENSTTRP00000008607/1-1382 XXXXXXXXGC TIINGSLIIN IRGGNNLAAE LEANLGLIEE ISGYLKIRRS ENSP00000303830/1-1382 VTSAQELRGC TVINGSLIIN IRGGNNLAAE LEANLGLIEE ISGYLKIRRS ENSBTAP00000016858/1-1382 VTSAQELRGC TIINGSLIIN IRGGNNLAAE LEANLGLIEE ISGYLKIRRS bmy_17835T0/1-1096 VTSAQELRGC TIVNGSLIIN IRGGNNLAAE LEANLGLIEE ISGYLKIRRS BACU002555/1-1161 VTSAQELRGC TIINGSLIIN IRGGNNLAAE LEANLGLIEE ISGYLKIRRS 401 450 ENSTTRP00000008607/1-1382 YALVSLSFFR KLRLIRGETL EIGNYSFYAL DNQNLRQLWD WSKHNLTITQ ENSP00000303830/1-1382 YALVSLSFFR KLRLIRGETL EIGNYSFYAL DNQNLRQLWD WSKHNLTITQ ENSBTAP00000016858/1-1382 YALVSLSFFR KLRLIRGETL EIGNYSFYAL DNQNLRQLWD WSKHNLTITQ bmy_17835T0/1-1096 YALVSLSFFR KLRLIRGETL EIGNYSFYAL DNQNLRQLWD WSKHNLTITQ BACU002555/1-1161 YALVSLSFFR KLRLIRGETL EIGNYSFYAL DNQNLRQLWD WSKHNLTITQ 451 500 ENSTTRP00000008607/1-1382 GKLFFHYNPK LCLSEIHKME EVSGTKGRQE RNDIALKTNG DQASXXXXXX ENSP00000303830/1-1382 GKLFFHYNPK LCLSEIHKME EVSGTKGRQE RNDIALKTNG DQASCENELL ENSBTAP00000016858/1-1382 GKLFFHYNPK LCLSEIHKME EVSGTKGRQE RNDIALKTNG DQASCENELL bmy_17835T0/1-1096 GKLFFHYNPK LCLSEIHKME EVSGTKGRQE RNDIALKTNG DQASCENELL BACU002555/1-1161 GKLFFHYNPK LCLSEIHKME EVSGTKGRQE RNDIALKTNG DQASCENELL 501 550 ENSTTRP00000008607/1-1382 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXYKEAPYQ NVTEFDGQDA ENSP00000303830/1-1382 KFSYIRTSFD KILLRWEPYW PPDFRDLLGF MLFYKEAPYQ NVTEFDGQDA ENSBTAP00000016858/1-1382 KFSYIRTSYD KILLKWEPYW PPDFRDLLGF MLFYKEAPYQ NVTEFDGQDA bmy_17835T0/1-1096 KFSYIRTSYD KILLKWEPYW PPDFRDLLGF MLFYKEAPYQ NVTEFDGQDA BACU002555/1-1161 KFSYIRTSYD KILLKWEPYW PPDFRDLLGF MLFYKEAPYQ NVTEFDGQDA 551 600 ENSTTRP00000008607/1-1382 CGSNSWTVVD IDPPMRSNDP KSQNHPGWLM RGLKPWTQYA IFVKTLVTFS ENSP00000303830/1-1382 CGSNSWTVVD IDPPLRSNDP KSQNHPGWLM RGLKPWTQYA IFVKTLVTFS ENSBTAP00000016858/1-1382 CGSNSWTVVD IDPPTRSNDP KSQNHPGWLM RGLKPWTQYA IFVKTLVTFS bmy_17835T0/1-1096 CGSNSWTVVD IDPPMRSNDP KSQNHPGWLM RGLKPWTQYA IFVKTLVTFS BACU002555/1-1161 CGSNSWTVVD IDPPMRSNDP KSQNHPGWLM RGLKPWTQYA IFVKTLVTFS 601 650 ENSTTRP00000008607/1-1382 DERRTYGAKS DIIYVQTDAT NPSVPLDPIS VSNSSSQIIL KWKPPSDPNG ENSP00000303830/1-1382 DERRTYGAKS DIIYVQTDAT NPSVPLDPIS VSNSSSQIIL KWKPPSDPNG ENSBTAP00000016858/1-1382 DERRTYGAKS DIIYVQTDAT NPSVPLDPIS VSNSSSQIIL KWKPPSDPNG bmy_17835T0/1-1096 DERRTYGAKS DIIYVQTDAT NPSVPLDPIS VSNSSSQIIL KWKPPSDPNG BACU002555/1-1161 DERRTYGAKS DIIYVQTDAT NPSVPLDPIS VSNSSSQIIL KWKPPSDPNG 651 700 ENSTTRP00000008607/1-1382 NITHYLVFWE RQEEDGELYE LDYCLKGLKL PSRTWSPPFE SEGSQKHNQS ENSP00000303830/1-1382 NITHYLVFWE RQAEDSELFE LDYCLKGLKL PSRTWSPPFE SEDSQKHNQS ENSBTAP00000016858/1-1382 NITHYLVFWE RQAEDSELYE LDYCLKGLKL PSRTWSPPFE SEGSQKHNQS bmy_17835T0/1-1096 NITHYLVFWE RQEEDGELYE LDYCLKGLKL PSRTWSPPFE SEGSQKHNHS BACU002555/1-1161 NITHYLVFWE RQEEDGELYE LDYCLKGLKL PSRTWSPPFE SEGSQKHNQS 701 750 ENSTTRP00000008607/1-1382 EYEESAGECC SCPKTDSQIL KELEESSFRK TFEDYLHNVV FIPRKSSSGP ENSP00000303830/1-1382 EYEDSAGECC SCPKTDSQIL KELEESSFRK TFEDYLHNVV FVPRKTSSGT ENSBTAP00000016858/1-1382 EYEESAGECC SCPKTDSQIL KELEESSFRK TFEDYLHNVV FIPRKSSSGP bmy_17835T0/1-1096 EYEDPAGECC SCPKTDSQIL KELEESSFRK TFEDYLHNVV FIP------- BACU002555/1-1161 EYEDSAGECC SCPKTDSQIL KELEESSFRK TFEDYLHNVV FIPRKSSSGP 751 800 ENSTTRP00000008607/1-1382 VAEDTRPSRK RRALGDVGNV TAAVPTIPGF PNTSSTSAPT SSEEHRPFEK ENSP00000303830/1-1382 GAEDPRPSRK RRSLGDVGNV TVAVPTVAAF PNTSSTSVPT SPEEHRPFEK ENSBTAP00000016858/1-1382 VAEDARPSRK RRALGDVGNV TAAVPTALGL PNTSSTSTPM SSEEHRPFEK bmy_17835T0/1-1096 -----RPSRK RRALGDVGNV TAAVPTIPGF PNTSSTSAPT SSEEHRPFEK BACU002555/1-1161 VAEDTRPSRK RRALGDVGNV TAAVPTIPGF PNTSSTSAPT SSEEHRPFEK 801 850 ENSTTRP00000008607/1-1382 VVNKESLVIS GLRHFTGYRI ELQACNQDSP EERCSVAAYV SARTMPEAKA ENSP00000303830/1-1382 VVNKESLVIS GLRHFTGYRI ELQACNQDTP EERCSVAAYV SARTMPEAKA ENSBTAP00000016858/1-1382 VVNKESLVIS GLRHFTGYRI ELQACNQDSP EERCSVAAYV SARTMPEAKA bmy_17835T0/1-1096 VVNKESLVIS GLRHFTGYRI ELQACNQDSP EERCSVAAYV SARTMPEAKA BACU002555/1-1161 VVNKESLVIS GLRHFTGYRI ELQACNQDSP -ERCSVAAYV SARTMPE--- 851 900 ENSTTRP00000008607/1-1382 DDIVGPVTHE IFENNVVHLM WQEPKEPNGL IVLYEVSYRR YGEEELHLCV ENSP00000303830/1-1382 DDIVGPVTHE IFENNVVHLM WQEPKEPNGL IVLYEVSYRR YGDEELHLCV ENSBTAP00000016858/1-1382 DDIVGPVTHE IFENNVVHLM WQEPKEPNGL IVLYEVSYRR YGEEELHLCV bmy_17835T0/1-1096 DDIVGPVTHE IFENNVVHLM WQEPKEPNGL IVLYEVSYRR YGEEELHLCV BACU002555/1-1161 DDIVGPVTHE IFENNVVHLM WQEPKEPNGL IVLYEVSYRR YGEEELHLCV 901 950 ENSTTRP00000008607/1-1382 SRRHFALERG CRLRGLPPGN YSVRVRATSL AGNGSWTEAT YFYVTDYLDM ENSP00000303830/1-1382 SRKHFALERG CRLRGLSPGN YSVRIRATSL AGNGSWTEPT YFYVTDYLDV ENSBTAP00000016858/1-1382 SRRHYALERG CRLRGLLPGN YSVRVRATSL AGNGSWTEAT YFYVTDYLDV bmy_17835T0/1-1096 SRRHFALERG CRLRGLPPGN YSVRVRATSL AGNGSWTEAT YFYVTDYL-- BACU002555/1-1161 SRRHFALERG CRLRGLPPGN YSVRVRATSL AGNGSWTEAT YFYVTDYLDV 951 1000 ENSTTRP00000008607/1-1382 PSNIAKIIIG PLIFVFLFSV VIGSIYLFLR KRQPDGPLGP LYASSNPEYL ENSP00000303830/1-1382 PSNIAKIIIG PLIFVFLFSV VIGSIYLFLR KRQPDGPLGP LYASSNPEYL ENSBTAP00000016858/1-1382 PSNIAKIIIG PLIFVFLFSV VIGSICLFLR KRQPDGPLGP LYASSNPEYL bmy_17835T0/1-1096 ---------- ---------- ---------- ---------- ---------- BACU002555/1-1161 PSNIAKIIIG PLIFVFLFSV VIGSIYLFLR KRQPDGPLGP LYASSNPEYL 1001 1050 ENSTTRP00000008607/1-1382 SASDVFPCSV YVPDEWEVPR EKITLLRELG QGSFGMVYEG NARDIVKGEA ENSP00000303830/1-1382 SASDVFPCSV YVPDEWEVSR EKITLLRELG QGSFGMVYEG NARDIIKGEA ENSBTAP00000016858/1-1382 SASDVFPCSV YVPDEWEVPR EKITLLRELG QGSFGMVYEG NARDIVKGEA bmy_17835T0/1-1096 -----FPCSV YVPDEWEVPR EKITLLRELG QGSFGMVYEG NARDIVKGEA BACU002555/1-1161 SASDVFPCSV YVPDEWEVPR EKITLLRELG QGSFGMVYEG NARDIVKGEA 1051 1100 ENSTTRP00000008607/1-1382 ETRVAVKTVN ESASLRERIE FLNEASVMKG FTCHHVVRLL GVVSKGQPTL ENSP00000303830/1-1382 ETRVAVKTVN ESASLRERIE FLNEASVMKG FTCHHVVRLL GVVSKGQPTL ENSBTAP00000016858/1-1382 ETRVAVKTVN ESASLRERIE FLNEASVMKG FTCHHVVRLL GVVSKGQPTL bmy_17835T0/1-1096 ETRVAVKTVN ESASLRERIE FLNEASVMKG FTCHHVVRLL GVVSKGQPTL BACU002555/1-1161 ETRVAVKTVN ESASLRERIE FLNEASVMKG FTCHHVVRLL GVVSKGQPTL 1101 1150 ENSTTRP00000008607/1-1382 VVMELMAHGD LKSYLRSLRP EAENNPGRPP PTLQEMIQMA AEIADGMAYL ENSP00000303830/1-1382 VVMELMAHGD LKSYLRSLRP EAENNPGRPP PTLQEMIQMA AEIADGMAYL ENSBTAP00000016858/1-1382 VVMELMAHGD LKSYLRSLRP EAENNPGRPP PTLQEMIQMA AEIADGMAYL bmy_17835T0/1-1096 VVMELMAHGD LKSYLRSLRP EAENNPGRPP PTLQEMIQMA AEIADGMAYL BACU002555/1-1161 VVMELMAHGD LKSYLRSLRP EAENNPGRPP PTLQEMIQMA AEIADGMAYL 1151 1200 ENSTTRP00000008607/1-1382 NAKKFVHRDL AARNCMVAHD FTVKIGDFGM TRDIYETDYY RKGGKGLLPV ENSP00000303830/1-1382 NAKKFVHRDL AARNCMVAHD FTVKIGDFGM TRDIYETDYY RKGGKGLLPV ENSBTAP00000016858/1-1382 NAKKFVHRDL AARNCMVAHD FTVKIGDFGM TRDIYETDYY RKGGKGLLPV bmy_17835T0/1-1096 NAKKFVHRDL AARNCMVAHD FTVKIGDFGM TRDIYETDYY RKGGKGLLPV BACU002555/1-1161 NAKKFVHRDL AARNCMVAHD FTVKIGDFGM TRDIYETDYY RKGGKGLLPV 1201 1250 ENSTTRP00000008607/1-1382 RWMAPESLKD GVFTTSSDMW SFGVVLWEIT SLXXXXXXXX XXXXXXXXXX ENSP00000303830/1-1382 RWMAPESLKD GVFTTSSDMW SFGVVLWEIT SLAEQPYQGL SNEQVLKFVM ENSBTAP00000016858/1-1382 RWMAPESLKD GVFTTSSDMW SFGVVLWEIT SLAEQPYQGL SNEQVLKFVM bmy_17835T0/1-1096 RWMAPESLKD GVFTTSSDMW SFGVVLWEIT SLAEQPYQGL SNEQVLKFVM BACU002555/1-1161 RWMAPESLKD GVFTTSSDMW SFGVVLWEIT SLAEQPYQGL SNEQVLKFVM 1251 1300 ENSTTRP00000008607/1-1382 XXXXXXXXXX XXXXXTDLMR MCWQFNPKMR PTFLEIVDLL KDELHPSFPE ENSP00000303830/1-1382 DGGYLDQPDN CPERVTDLMR MCWQFNPKMR PTFLEIVNLL KDDLHPSFPE ENSBTAP00000016858/1-1382 DGGYLDQPDN CPERVTDLMR MCWQFNPKMR PTFLEIVDLL KDDLHPSFPE bmy_17835T0/1-1096 DGGYLDQPDN CPERVTDLMR MCWQFNPKMR PTFLEIVDLL KDELHPSFPE BACU002555/1-1161 DGGYLDQPDN CPERVTDLMR MCWQFNPKMR PTFLEIVDLL KDELHPSFPE 1301 1350 ENSTTRP00000008607/1-1382 VSFFHSEENK VPESEELEME FEDMESVPLD RSSHVQREEA GGRDGGSALG ENSP00000303830/1-1382 VSFFHSEENK APESEELEME FEDMENVPLD RSSHCQREEA GGRDGGSSLG ENSBTAP00000016858/1-1382 VSFFHSEENK APESEELEME FEDMESVPLD RASHAQREEA GGRDGGSALG bmy_17835T0/1-1096 VSFFHSEENK VPESEELEME FEDMESVPLD RSSHAQREEA GGRDGGSALG BACU002555/1-1161 VSFFHSEENK VPESEELEME FEDMESVPLD RSSHAQREEA GGRDGGSALG 1351 1400 ENSTTRP00000008607/1-1382 LKRNYQEHIP YTHMNGGKKN GRILTLPRSN PS ENSP00000303830/1-1382 FKRSYEEHIP YTHMNGGKKN GRILTLPRSN PS ENSBTAP00000016858/1-1382 LKRNYDEHIP YTHMNGGKKN GRILTLPRSN PS bmy_17835T0/1-1096 LKRNYDEHIP YTHMNGGKKN GRVLTLPRSN PS BACU002555/1-1161 LKRNYEEHIP YTHMNGGKKN GRILTLPRSN PS