KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 16:59:56 2014 Check: 00 .. Name: ENSP00000285046/1-1462 Len: 1576 Check: 1079 Weight: 1.00 Name: ENSBTAP00000016893/1-1496 Len: 1576 Check: 745 Weight: 1.00 Name: ENSTTRP00000009361/1-1466 Len: 1576 Check: 737 Weight: 1.00 Name: bmy_16390T0/1-1043 Len: 1576 Check: 1829 Weight: 1.00 Name: BACU015199/1-932 Len: 1576 Check: 9686 Weight: 1.00 // 1 50 ENSP00000285046/1-1462 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000016893/1-1496 ---------- ---------- -----FHPLD SPKPPVAPKP KAASSLTPQT ENSTTRP00000009361/1-1466 ---------- ---------- ---------- ---------- ---------- bmy_16390T0/1-1043 MLVEGVSLTE HGRLGSRGLG NHLQCSLVND SPKPPVAPKP KAASPLTPVT BACU015199/1-932 ---------- ----MVITPH TVIDRIPELN SPKPPVAPKP KAASPLTPVT 51 100 ENSP00000285046/1-1462 ---------- ---------- MFRGPKPPIA PKPRLTAPNE WRASVYLNDS ENSBTAP00000016893/1-1496 PPKFCPSSLR PESLHSPNSS MSRGPKPPIA PKPRLATPSE WRASVYVINS ENSTTRP00000009361/1-1466 ---------- ---------- MSRGPKPPIA PKPRLATPSE WRASIYMINS bmy_16390T0/1-1043 APKF-PSSPR PESLHSPN-S MSRGPKPPIA PKPRLATPSE WRASIYMINS BACU015199/1-932 APKF-PSSPR PESLHSPN-S MSRGPKPPIA PKPRLATPSE WRASIYMINS 101 150 ENSP00000285046/1-1462 LNKCSNGRLP CVDRGLDEGP RSIPKCSESE TDEDYIVVPR VPLREDEPKD ENSBTAP00000016893/1-1496 LNKCSNGKLP CVDRGLYEEH RSTPECSESE ADEDYIVAPR APPGEDGARD ENSTTRP00000009361/1-1466 LNKCSNGKLP CVDRGLYDEH RSTPECSKPE ADEDYIVAPG APAAEDGPRD bmy_16390T0/1-1043 LNKCSNGKLP CVDRGLYDEH RSTPECSEPE ADEDYIVAPR APPAEDGPRD BACU015199/1-932 LNKCSNGKLP CVDRGLYDEH RSTPECSEPE ADEDYIVAPR APPAEDGPSD 151 200 ENSP00000285046/1-1462 EGSVGNKALV SPESSAEEEE EREEGGEACG LEGTGAGEDS VAPAAPGAGA ENSBTAP00000016893/1-1496 AGCVENAVTG PPEAG--EEE EGQDGGEGCG PAGSAAAEAW --------AV ENSTTRP00000009361/1-1466 GGSVENAVTV PPEAS--GGE ECQERGKECE QEGAAAAEDW ---AAPAEAV bmy_16390T0/1-1043 GGSVENAVPV PPEAS--GGE ECQERGEECE QEGAAAAEDW ---AAPAEAV BACU015199/1-932 GGSVENAVTV PPEGS--GGE ECQERGEECE QEGAAAAEDW ---AAPAEAV 201 250 ENSP00000285046/1-1462 LSREGEEGTD LALED-EGEG CADEPGTLEQ VSRS-EEEEK LVQPHRECSL ENSBTAP00000016893/1-1496 LSEQADRDVA PAPEDAEGPD CAGAVGTEDQ TLASEEEEEK LAEEHRACSL ENSTTRP00000009361/1-1466 LGGEDDGGVT PTPENMEVED CACAPGAEEQ KFTS-DDEEK QVEEHSVYSL bmy_16390T0/1-1043 LSGEGDGGVT PTSENVEVED CACDSGAEEQ KFTS-EEEEK QVEEHSVYSL BACU015199/1-932 LSGEGDGGIT PTPEDMEVED CACDSGAEEQ KFTS-EEEEK QVEEHSVYSL 251 300 ENSP00000285046/1-1462 E--------- ---DSG--PW AGEGVFQSDL LLPHIHG--- ------EDQE ENSBTAP00000016893/1-1496 EDEDGEAEPG EPGDGGAEPG DGWAESLSDS IPAHLEVLED TVVGGEEEPG ENSTTRP00000009361/1-1466 E--------- ---DGG--AG DGEAVLPSDI ILTHLDAEDP AARG--EEPR bmy_16390T0/1-1043 E--------- ---DGG--PG DGEAVLPSDI ILSHLDAEDP AAR---EEPG BACU015199/1-932 E--------- ---DGG--PG DGEVVLPSDI ILSHLDAEDP AARG--EEPG 301 350 ENSP00000285046/1-1462 PPDTPGEAEE DDEEGCASTD PAGADEGSGP DRPTEDMGQD AEDTSEEPPE ENSBTAP00000016893/1-1496 APGTPQEAEE EDAEPGHSVD EGG------- ---------E GDDAGEEPPE ENSTTRP00000009361/1-1466 PPVTPGESEE DGEEGRTNTE LGASDECVGS DGPPE---RD AADGSEEPPE bmy_16390T0/1-1043 PPVTPGESEE DGEEGRTNTE LGAPDECVGS DGPAE---QD AADGGKEPPE BACU015199/1-932 PPVTPGESEE DGEEGRTSTE LGAPDECVGS DGPAE---RD AADGGEEPPE 351 400 ENSP00000285046/1-1462 KEELA-GVQE AETATDCPEV LEEGCEEATG VTGGEQVDLS EPPDHEKKTN ENSBTAP00000016893/1-1496 DEESATGVPE AEVASDDPEV SREACEDAAG Y-GGQHDGQD EPADPAEA-- ENSTTRP00000009361/1-1466 NEGLAPGVPE AEVATDSPDV SQEACEDAPG G-GGQ-DGQD EPADQKEKPD bmy_16390T0/1-1043 NEGLATGVPE AEAATDSPDI SQEACEDAPG G-GGQ-DGQD EPPDQKEKTD BACU015199/1-932 NEGLATGVPE VEAATDSPDI SQEACEDAPG G-GGQ-DGQD EPPDQKEKTD 401 450 ENSP00000285046/1-1462 QEVAAATL-- --------ED HAQDESAEES CQIVPFENDC MEDFVTSLTG ENSBTAP00000016893/1-1496 ---------E AGQDPRQGED PVQDEAAEES CHIIPFESDS VDDLVPPLSA ENSTTRP00000009361/1-1466 TEATAVVTQ- --------ED PVQDEGAEES CQIIPFERDC VDDFVAPLLG bmy_16390T0/1-1043 PEEAAVVTQE AGEDPQEGED PVQDEGAEES CQIIPFERDF VDDFVAPLSG BACU015199/1-932 LEETAVVTQE AGEDPQEGED PVQDEGAEES CQIIPFERDF VDDFVAPLSG 451 500 ENSP00000285046/1-1462 SPYEFFPTES TSFCSESCSP LSESAKGLES EQAPKLGLRA EENPMVGALC ENSBTAP00000016893/1-1496 SPYEFFPTES TSFCSESYPP YSESAG--ES AQEPGPEERA ERDPEAGPGR ENSTTRP00000009361/1-1466 RPYEFFPSES TSFCSESCSP YSESAQSLES EQEPRSGERA QQDPVAGPGC bmy_16390T0/1-1043 RPYEFFPSES TSFCSESCSP YSESAQSLES EQEPRSGERA EQDPVAGPGC BACU015199/1-932 RPYEFFPSES TSFCSESCSP YSESAQSLES EQEPRSGERA EQDPVAGPGC 501 550 ENSP00000285046/1-1462 GQCGSLQGGA A-EGPAAPDV VVVLEEE-AL DDALANPYVM GVGLPGQAAP ENSBTAP00000016893/1-1496 ERRGSAQGGA GEEGAPVPDV LVLPEDED-- ----ANPYEM GVGPTCEADP ENSTTRP00000009361/1-1466 GRRGSLQGGA G-EGPSVPDV VVMPEEEDAV DDALANPYEM GVGLACGVDP bmy_16390T0/1-1043 GRRGSLQGGA G-EGPSVPDV VVMPDEEDAA DDALANPYEM GVGLACGADP BACU015199/1-932 GRRGSLQGGA R-EGPSVPDV VVMPEEEGAA DDALANPYEM GVGLACGADP 551 600 ENSP00000285046/1-1462 GEG----GQA ASDALGGYGS KEELNCEAEG GLVPADRKNT STRVRPHSGK ENSBTAP00000016893/1-1496 GEAETPGAQA AL-------- -QELSPDAEG GLVPIDRKNV MARARPHSGK ENSTTRP00000009361/1-1466 GEEEKPEAQA ASGTANGCGL KEEVSSDAEG SLVPIDRKNV TTRARPHSGK bmy_16390T0/1-1043 GEGEKPEAQA ASDTASGCGL KEEVSSDAEG GLVPIDRKNV ITRARPHSGK BACU015199/1-932 GEGEKPEAQA ASDTASGCGL KEEVNSDAEG GLVPIDRKNV ITRARPHSGK 601 650 ENSP00000285046/1-1462 VAGYVPETVP EETGPEAGSS APGIGGAAEE VGKTLLSLEG KPLEASRALP ENSBTAP00000016893/1-1496 LAGYVPETVP EEMGPEAGSA AAGVGAAAAE GRKTVLSLEG KPLDVGRALP ENSTTRP00000009361/1-1466 MAGYVPETVP EETGPEAGSS AIGIGGVTKE ARKAVLSLEG KPLDVGRALP bmy_16390T0/1-1043 MAGCVPETVP EETGPEAGSS AIGIGGATKE ARKAVLSLEG KLLDVGRALP BACU015199/1-932 MAGCVPETVP EETGPEAGSS AIGIGGATKE ARKAVLSLEG KLLDVGRALP 651 700 ENSP00000285046/1-1462 AKPRAFTLYP RSFSVEGREI PVSVYQEPEG SGLDDHRIKR KEDNLSLSCV ENSBTAP00000016893/1-1496 AKPRGFTLYP RSFSVEGREI PVSLYREPEA CGLEGHGIKR KEDNLSLPCV ENSTTRP00000009361/1-1466 AKPRAFTLYP RSFSVEGREI PMSLCREPEA CGLDGHGIKR KDDNLSLPCV bmy_16390T0/1-1043 AKPRAFTLYP RSFSVEGREI PVSLCREPEA CGLDSHGIKR KDDNLSLPCM BACU015199/1-932 AKPRAFTLYP RSFSVEGREI PLSLCREPEA CGLDGHGIKR KDDNLSLPCM 701 750 ENSP00000285046/1-1462 IGSSGSFSQR NHLPSSGTST PSSMVDIPPP FDLACITKKP ITKSSPSLLI ENSBTAP00000016893/1-1496 IGSSGSFSQR SHLPSSGTST PSSMVDIPPP FDLACITKKP ITKSSPSLLV ENSTTRP00000009361/1-1466 IGSSGSFSQR GHLPSSGTST PSSVVDIPPP FDLACITKKP ITKSSPSLLV bmy_16390T0/1-1043 IGSSGSFSQR GHLPSSGTST PSSVVDIPPP FDLACITKKP ITKSSPSLLV BACU015199/1-932 IGSSGSFSQR GHLPSSGTST PSSVVDIPPP FDLACITKKP ITKSSPSLLV 751 800 ENSP00000285046/1-1462 ESDSPDKY-K KKKSSFKRFL ALTFKKKTEN KLHVDVNVSS SRSSSESSYH ENSBTAP00000016893/1-1496 ESEPPDKHSK KKKSSFKRFL ALTFKKKTES KVHVDVNVSS SRSSSESSYH ENSTTRP00000009361/1-1466 ESEPPDKHTK KKKPSFKRFL ALTFKKKTES KVHVDVNVSS SRSSSESSYH bmy_16390T0/1-1043 ESEPPDKHTK KKKPSFKRFL ALTFKKKTES KVHVDVNVSS SRSSSESSYH BACU015199/1-932 ESEPPDKHTK KKKPSFKRFL ALTFKKKTES KVHVDVNVSS SRSSSESSYH 801 850 ENSP00000285046/1-1462 GPSRILEVDR RSLSNSPQLK SRTGKLRASE SPSSLIFYRD GKRKGVPFSR ENSBTAP00000016893/1-1496 GPARLLEMDR RSLSNSPQLR ARTGKLRACD SPSSLIFCRE GKRKGVPFSR ENSTTRP00000009361/1-1466 GPARLLEMDR RSLSNSPQLR ARTGKLRACD SPSSLIFYRD GKRKGVPFSR bmy_16390T0/1-1043 GPARLLEMDR RSLSNSPQLK ARTGKLRACD SPSSLIFYRD GKRKGVPFSR BACU015199/1-932 GPARLLEMDR RSLSNSPQLK ARTGKLRACD SPSSLIFYRD GKRKG----- 851 900 ENSP00000285046/1-1462 TVSRVESFED RSRPPFLPLP LTKPRSISFP SADTSDYENI PAMNSDYENI ENSBTAP00000016893/1-1496 TVSRVESFED RSRPPFLPLP LTKPRSISFP NADTSDYENI PAMNSDYENI ENSTTRP00000009361/1-1466 TVSRVESFED RSRPPFLPLP LTKPRSISFP NADTSDYENI PAMNSDYENI bmy_16390T0/1-1043 TVSRVESFED RSRPPFLPLP LTKPRSISFP NADTSDYENI PAMNSDYENI BACU015199/1-932 ---------- ---------- ---PRSISFP NADTSDYENI PAMNSDYENI 901 950 ENSP00000285046/1-1462 QIPPRRPARA GAFTKLFEDQ SRALSTANEN DGYVDMSSFN AFESKQQSAD ENSBTAP00000016893/1-1496 QIPPRRPARA GTFTKLFEDQ SRALSTANEN DGYVDMSSFN AFESKPQSAD ENSTTRP00000009361/1-1466 QIPPRRPPRA GTFTKLFEDQ SRALSTANEN DGYVDMSSFN AFESKQQSAD bmy_16390T0/1-1043 QIPPRRPPRA GTFTKLFEDQ SRALSTANEN DGYVDMSSFN AFESKQQSAD BACU015199/1-932 QIPPRRPPRA GTFTKLFEDQ SRALSTANEN DGYVDMSSFN AFESKQQSAD 951 1000 ENSP00000285046/1-1462 QDAESAYTEP YKVCPISSAA PKEDLTSDEE QRSS-EEEDS ASRDPSVTHK ENSBTAP00000016893/1-1496 PEAESAYTEP YKVCPISAVA PKEDLTSEEE RGSSEEEEDR AARDPTLPHK ENSTTRP00000009361/1-1466 QEAESAYTEP YKVCPISAVA PKEDLTSDEE RGSS-EEEDS APRDPSLTHK bmy_16390T0/1-1043 QEAESHFGRP WG-------- ---------- ---------- ---DP----- BACU015199/1-932 QEAERH---- ---------- ---------- ---------- ---------- 1001 1050 ENSP00000285046/1-1462 VEGQSRALVI AQELLSSEKA YVEMLQHLNL DFHGAVMRAL DDMDHEGRDT ENSBTAP00000016893/1-1496 VEGQSRAHVI AQELLSSEKA YVEMLQHLYL DFHGAVVRAL DEMDYEGKDP ENSTTRP00000009361/1-1466 VDGQSRAHVI AQELLSSEKA YVEMLQHIHL DFHGAVMGAL DEMDQEGKDT bmy_16390T0/1-1043 ---------- ---------- ---------- ---------- ---------- BACU015199/1-932 ---------- ---------- ---------- ---------- ---------- 1051 1100 ENSP00000285046/1-1462 LAREELRQGL SELPAIHDLH QGILEELEER LSNWESQQKV ADVFLAREQG ENSBTAP00000016893/1-1496 VGREELRRGL SELPAIHDLH QGILEELEER LAHWEGQQKV ADVFLAREQE ENSTTRP00000009361/1-1466 LAREELRRGL SELPPIRDLH QGILEELEER LSHWESQQKV ADVFLAREQE bmy_16390T0/1-1043 ---------- ---------- ---------- ---------- ---------- BACU015199/1-932 ---------- ---------- ---------- ---------- ---------- 1101 1150 ENSP00000285046/1-1462 FDHHATHILQ FDRYLGLLSE NCLHSPRLAA AVREFEQSVQ GGSQTAKHRL ENSBTAP00000016893/1-1496 FAHHATHILQ FDRYLSLLGE NCLHAPRLAA AVREFEQSQQ GGGQNVKHRL ENSTTRP00000009361/1-1466 FEHHAAHIQQ FDRYLSLLGE NCLHAPRLAA AVREFEQSQQ GGGQNVKHRL bmy_16390T0/1-1043 ---------- ---------- ----GPPVAP CVR------- ---------- BACU015199/1-932 ---------- ---------- ---------- ---------- ---------- 1151 1200 ENSP00000285046/1-1462 LRVVQRLFQY QVLLTDYLNN LCPDSAEYDN TQGALSLISK VTDRANDSME ENSBTAP00000016893/1-1496 LRVVRRLFQY EALLTDYLNN LCPDSAEYDD TQGALTLISK ITDRANDSME ENSTTRP00000009361/1-1466 LRVQR--VQX XXXXXXYLNN LCPDSAEYDN TQGSLTLISK VTDRANDSME bmy_16390T0/1-1043 ---------- ---------- ---------- ---------- ---------- BACU015199/1-932 ---------- ---------- ---------- ---------- ---------- 1201 1250 ENSP00000285046/1-1462 QGENLQKLVH IEHSVRGQGD LLQPGREFLK EGTLMKVTGK NRRPRHLFLM ENSBTAP00000016893/1-1496 QGENLQKLVH IEHSVRGQGD LLQPGREFLK EGTLMKVTGK NRRPRHLFLM ENSTTRP00000009361/1-1466 QGENLQKLVH IEHSVRGQGD LLQPGREFLK EGTLMKVTGK NRRPRHLFLM bmy_16390T0/1-1043 ---------- ---------- ---------- ---------- ---------- BACU015199/1-932 ---------- ---------- ---------- ---------- ---------- 1251 1300 ENSP00000285046/1-1462 NDVLLYTYPQ KDGKYRLKNT LAVANMKVSR PVMEKVPYAL KIETSESCLM ENSBTAP00000016893/1-1496 SDVLLYTYPQ KDGKYRLKSA LAVASMKVSR PVMEKVPYAL KIETPESCLT ENSTTRP00000009361/1-1466 SDVLLYTYPQ KDGKYRLKNA LAVASMKVSR PVMEKVPYAL KIETSESCLT bmy_16390T0/1-1043 ---------- --GAARRSSG LEQLSVPLIR GASDD----- ---------S BACU015199/1-932 ---------- --GDYVGETG LKALSTKLT- ---------- ---------- 1301 1350 ENSP00000285046/1-1462 LSASSCAERD EWYGCLSRAL PEDYKAQALA AFHHSVEIRE RLGVSLGERP ENSBTAP00000016893/1-1496 LSASSCAERD EWHSCVSRAL PEDYKAQALA AFQHSVEIRE RLGVSLGERP ENSTTRP00000009361/1-1466 LSASSCAERD EWHSCLSRAL PEDSKAQALA AFQHSVEIRE RLGVSLGERP bmy_16390T0/1-1043 APHSSPFQRE LW-------- ---------- ---------- -----MGRGP BACU015199/1-932 ---------- ---------- PSSSRSQSV- ---------- ---------- 1351 1400 ENSP00000285046/1-1462 PTLVPVTHVM MCMNCGCDFS LTLRRHHCHA CGKIVCRNCS RNKYPLKYLK ENSBTAP00000016893/1-1496 PTLVPVTHVM MCMNCGCDFS LTLRRHHCHA CGKIVCRNCS RNKYPLKYLK ENSTTRP00000009361/1-1466 PTLVPVTHVM MCMNCGCDFS LTLRRHHCHA CGKIVCRNCS RNKYPLKYLK bmy_16390T0/1-1043 AFQALLQS-- -CSLSECSSN YMLRSSW--- ---------- -----IGHVV BACU015199/1-932 -----VEH-- -CT------- ---------- ---------- ---------- 1401 1450 ENSP00000285046/1-1462 DRMAKVCDGC FGELKKRGRA VPGLMRERPV SMSFPLSSPR FSGSAFSSVF ENSBTAP00000016893/1-1496 DRMAKVCDGC YGELKKRGGD APGMMRERPL SMSFPLSSAR FSSSAFSSVF ENSTTRP00000009361/1-1466 DRMAKVCDGC YGELKKRGGD IPGLMRGRPV SMSFPLSSTR FSSSAFSSVF bmy_16390T0/1-1043 QRKMRIMSG- ---------- ---------- ---------- ---------- BACU015199/1-932 --------G- ---------- ---------- ---------- ---------- 1451 1500 ENSP00000285046/1-1462 QSINPSTFKK QKKVPSALTE VAASGEGSAI SGYLSRCKRG KRHWKKLWFV ENSBTAP00000016893/1-1496 HSINPSAFRK QRKVPSALTE VAASGEGSAI SGYLNRCKKG KRHWKKLWFV ENSTTRP00000009361/1-1466 QSINPSAFKK QKKVPSALTE VAASGEGSAI SGYLSRCKKG KRHWKKLWFV bmy_16390T0/1-1043 ---------- ---------- ---------- ---------- ---------- BACU015199/1-932 ---------- ---------- ---------- ---------- ---------- 1501 1550 ENSP00000285046/1-1462 IKGKVLYTYM ASEDKVALES MPLLGFTIAP EKEEGSSEVG PIFHLYHKKT ENSBTAP00000016893/1-1496 INGKVLYTYA AREDTVALES MPLLGFTVAS SKEEGSSEAS PTFHLYHKKT ENSTTRP00000009361/1-1466 IKGKVLYTYM ASEDTVALES MPLLGFTIAP EKEEGSSEVG PIFHLYHKKT bmy_16390T0/1-1043 ---------- ------SIQG IEYFGSPMTT IREMSNSE-- ---------- BACU015199/1-932 ---------- ------SANS LT--GQPL-- --NIGCRS-- ---------- 1551 1600 ENSP00000285046/1-1462 LFYSFKAEDT NSAQRWIEAM EDASVL ENSBTAP00000016893/1-1496 LFYSFKAEDS SLAQRWIEAM EDASVL ENSTTRP00000009361/1-1466 VFYSFKAEDT NSAQRWIEAM EDASVL bmy_16390T0/1-1043 ---------- ---------- ------ BACU015199/1-932 ---------- ---------- ------