KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 16:59:58 2014 Check: 00 .. Name: ENSBTAP00000016895/1-1466 Len: 1499 Check: 6029 Weight: 1.00 Name: ENSP00000156471/1-1485 Len: 1499 Check: 9707 Weight: 1.00 Name: ENSTTRP00000014034/1-1482 Len: 1499 Check: 7805 Weight: 1.00 Name: BACU008553/1-1485 Len: 1499 Check: 2599 Weight: 1.00 Name: bmy_09123T0/1-819 Len: 1499 Check: 1640 Weight: 1.00 // 1 50 ENSBTAP00000016895/1-1466 MTAPAQPKKI VAPTVSQINA EFVTQ----- ------LACK YWAPHIKKKS ENSP00000156471/1-1485 MAAPAQPKKI VAPTVSQINA EFVTQ----- ------LACK YWAPHIKKKS ENSTTRP00000014034/1-1482 MTAPAQPKKI VAPTVSQINA EFVTQ----- ------LACK YWAPHIKKKS BACU008553/1-1485 MTAPAQPKKI VAPTVSQINA EFVTQ----- ------LACK YWAPHIKKKS bmy_09123T0/1-819 MTAPAQPKKI VAPTVSQINA EFVTQVRLGE SGVCEGLACK YWAPHIKKKS 51 100 ENSBTAP00000016895/1-1466 PFDIKVIEDI YEKEIVKSRF AIRKIMLLEF SQYLENYLWM NYSPEVSSKA ENSP00000156471/1-1485 PFDIKVIEDI YEKEIVKSRF AIRKIMLLEF SQYLENYLWM NYSPEVSSKA ENSTTRP00000014034/1-1482 PFDIKVIEDI YEKEIVKSRF AIRKIMLLEF SQYLENYLWM NYSPEVSSKA BACU008553/1-1485 PFDIKVIEDI YEKEIVKSRF AIRKIMLLEF SQYLENYLWM NYSPEVSSKA bmy_09123T0/1-819 PFDIKVIEDI YEKEIVKSRF AIRKIMLLEF SQYLENYLWM NYSPEVSSKA 101 150 ENSBTAP00000016895/1-1466 YLMSICCMVN EKFRENVPAW ETFKKKPDHF PFFFKCILKA ALAETDGEFS ENSP00000156471/1-1485 YLMSICCMVN EKFRENVPAW EIFKKKPDHF PFFFKHILKA ALAETDGEFS ENSTTRP00000014034/1-1482 YLMSICCMVN EKFRENVPAW ETFKKKPDDF PFFFKCILKA ALAETDGEFS BACU008553/1-1485 YLMSICCMVN EKFRENVPAW ETFKKKPDDF PFFFKCILKA ALAETDGEFS bmy_09123T0/1-819 YLMSICCMVN EKFRENVPAW ETFKKKPDDF PFFFKCILKA ALAETDGEFS 151 200 ENSBTAP00000016895/1-1466 LHEQTVLLLF LDHCFNSLEV DLIRSQVQQL ISLPMWMGLQ PARLELELKK ENSP00000156471/1-1485 LHEQTVLLLF LDHCFNSLEV DLIRSQVQQL ISLPMWMGLQ LARLELELKK ENSTTRP00000014034/1-1482 LHEQTVLLLF LDHCFNSLEV DLIRSQVQQL ISF-MWMGLQ PARLELELKK BACU008553/1-1485 LHEQTVLLLF LDHCFNSLEV DLIRSQVQQL ISLPMWMGLQ PARLELELKK bmy_09123T0/1-819 LHEQTVLLLF LDHCFNSLEV DLIRSQVQQL ISLPMWMGLQ PARLELELKK 201 250 ENSBTAP00000016895/1-1466 TPKLRKFWNL IKKNDEKMDP EAREQAYQER RFLSQLIQKF ISVLKSVPLS ENSP00000156471/1-1485 TPKLRKFWNL IKKNDEKMDP EAREQAYQER RFLSQLIQKF ISVLKSVPLS ENSTTRP00000014034/1-1482 TPKLRKFWNL IKKNDEKMDP EAREQAYQER RFLSQLIQKF ISVLKSVPLS BACU008553/1-1485 TPKLRKFWNL IKKNDEKMDP EAREQAYQER RFLSQLIQKF ISVLKSVPLS bmy_09123T0/1-819 TPKLRKFWNL IKKNDEKMDP EAREQAYQER RFLSQLIQKF ISVLKSVPLS 251 300 ENSBTAP00000016895/1-1466 DPVTMDKVHY CERFIELMID LEALLPTRRW FNTILDDSHV LVHCYLSNLV ENSP00000156471/1-1485 EPVTMDKVHY CERFIELMID LEALLPTRRW FNTILDDSHL LVHCYLSNLV ENSTTRP00000014034/1-1482 EPVTMDKVHY CERFIELMID LEALLPTRRW FNTILDDSHL LVHCYLSNLV BACU008553/1-1485 EPVTMDKVHY CERFIELMID LEALLPTRRW FNTILDDSHL LVHCYLSNLV bmy_09123T0/1-819 EPVTMDKVHY CERFIELMID LEALLPTRRW FNTILDDSHL LVHCYLSNLV 301 350 ENSBTAP00000016895/1-1466 RREEDGHLFS QLLDMLKFYT GFEINDQTGN ALTENEMTTI HYDRITSLQR ENSP00000156471/1-1485 RREEDGHLFS QLLDMLKFYT GFEINDQTGN ALTENEMTTI HYDRITSLQR ENSTTRP00000014034/1-1482 RREEDGHLFS QLLDMLKFYT GFEINDQTGN ALTENEMTTI HYDRITSLQR BACU008553/1-1485 RREEDGHLFS QLLDMLKFYT GFEINDQTGN ALTENEMTTI HYDRITSLQR bmy_09123T0/1-819 RREEDGHLFS QLLDMLKFYT GFEINDQTGN ALTENEMTTI HYDRITSLQR 351 400 ENSBTAP00000016895/1-1466 AAFAHFPELY DFALSNVAEV DTRESLVKFF GPLSYFCTAL SDIICCTTIL ENSP00000156471/1-1485 AAFAHFPELY DFALSNVAEV DTRESLVKFF GPLS--SNTL HQVASYLCLL ENSTTRP00000014034/1-1482 AAFAHFPELY DFALSNVAEV DTRESLIKCF GPLS--SNTL HQVASYLCLL BACU008553/1-1485 AAFAHFPELY DFALSNVAEV DTRESLIKFF GPLS--SNTL HQVASYLCLL bmy_09123T0/1-819 AAFAHFPELY DFALSNVAEV DTRESLIKCF GPLS--SSTL HQVASYLCLL 401 450 ENSBTAP00000016895/1-1466 TV-----KTS FSLAFL---- -------IFG SLKYNYTSLF FVKFIFLNSI ENSP00000156471/1-1485 PTLPKNEDTT FDKEFLLELL VSRHERRISQ IQQLNQMPLY PTEKIIWDEN ENSTTRP00000014034/1-1482 PTLPKGEDTT FDKEFLLELL VSRHERRISQ IQQLNQMPLY PTEKIIWDEN BACU008553/1-1485 PTLPKGEDTT SDKEFLLELL VSRHERRISQ IQQLNQMPLY PTEKIIWDEN bmy_09123T0/1-819 PTLPKGEDTT FDKEFLLELL VSRHERRISQ IQQLNQMPLY PTEKIIWDEN 451 500 ENSBTAP00000016895/1-1466 CM---LFSFS GCLALPKLNL QFLTLHDYLL RNFNLFRLES TYEIRQDIED ENSP00000156471/1-1485 IVPTEYYSGE GCLALPKLNL QFLTLHDYLL RNFNLFRLES TYEIRQDIED ENSTTRP00000014034/1-1482 IVPTEYYSGE GCLALPKLNL QFLTLHDYLL RNFNLFRLES TYEIRQDIED BACU008553/1-1485 IVPTEYYSGE GCLALPKLNL QFLTLHDYLL RNFNLFRLES TYEIRQDIED bmy_09123T0/1-819 IVPTEYYSGE GCLALPKLNL QFLTLHDYLL RNFNLFRLES TYEIRQDIED 501 550 ENSBTAP00000016895/1-1466 SVSRMKPWQS EYGGVVFGGW ARMAQPIVAF TVVEVAKPNI GENWPTRVRA ENSP00000156471/1-1485 SVSRMKPWQS EYGGVVFGGW ARMAQPIVAF TVVEVAKPNI GENWPTRVRA ENSTTRP00000014034/1-1482 SVSRMKPWQS EYGGVVFGGW ARMAQPIVAF TVVEVAKPSI GENWPTRVRA BACU008553/1-1485 SVSRMKPWQS EYGGVVFGGW ARMAQPIVAF TVVEVAKPSI GENWPTRVRA bmy_09123T0/1-819 SVSRMKPWQS EYGGVVFGGW ARMAQPIVAF TVVEVAKPSI GENWPTRVRA 551 600 ENSBTAP00000016895/1-1466 DVTINLNVRD HIKDEWEGLR KHDVCFLITV RPTKPYGTKF DRRRPFIEQV ENSP00000156471/1-1485 DVTINLNVRD HIKDEWEGLR KHDVCFLITV RPTKPYGTKF DRRRPFIEQV ENSTTRP00000014034/1-1482 DVSIHLNVRD HIRDEWEGLR KHDVCFLITV RPTKPYGTKF DRRRPFVEQV BACU008553/1-1485 DVTIHLNVRD HIRDEWEGLR KHDVCFLITV RPTKPYGTKF DRRRPFIEQV bmy_09123T0/1-819 DVTIHLNVRD HIRDEWEGLR KHDVCFLITV RPTKPYGTKF DRRRPFIEQV 601 650 ENSBTAP00000016895/1-1466 GLVYVRGCEI QGMLDDKGRV IEDGPEPRPS LRGESRTFRV FLDPNQYQQD ENSP00000156471/1-1485 GLVYVRGCEI QGMLDDKGRV IEDGPEPRPN LRGESRTFRV FLDPNQYQQD ENSTTRP00000014034/1-1482 GLVYVRGCEV QGMLDDKGRV IEDGPEPRPN LRGESRTFRV FLDPNQYQQD BACU008553/1-1485 GLVYVRGCEI QGMLDDKGRV IEDGPEPRPN LRGESRTFRV FLDPNQYQQD bmy_09123T0/1-819 GLVYVRGCEI QGMLDDKGRV IEDGPEPRPN LRGESRTFRV FLDPNQYQQD 651 700 ENSBTAP00000016895/1-1466 MTNTIQNGAE DVYETFNVIM RRKPKENNFK AVLETIRNLM NTDCVVPDWL ENSP00000156471/1-1485 MTNTIQNGAE DVYETFNIIM RRKPKENNFK AVLETIRNLM NTDCVVPDWL ENSTTRP00000014034/1-1482 MTNTIQNGAE DVYETFNIIM RRKPKENNFK AVLETIRNLM NTDCVVPDWL BACU008553/1-1485 MTNTIQNGAE DVYETFNIIM RRKPKENNFK AVLETIRNLM NTDCVVPDWL bmy_09123T0/1-819 MTNTIQNGAE DVYETFNIIM RRKPKENNFK AVLETIRNLM NTDCVVPDWL 701 750 ENSBTAP00000016895/1-1466 HDIILGYGDP SSAHYSKMPN QIATLDFNDT FLSIEHLKAS FPGHNVKVTV ENSP00000156471/1-1485 HDIILGYGDP SSAHYSKMPN QIATLDFNDT FLSIEHLKAS FPGHNVKVTV ENSTTRP00000014034/1-1482 HDIILGYGDP SSAHYSKMPN QIATLDFNDT FFSIEHLKTS FPGHNVKVTV BACU008553/1-1485 HDIILGYGDP SSAHYSKMPN QIATLDFNDT FFSIEHLKTS FPGHNVKVTV bmy_09123T0/1-819 HDIILGYGDP SSAHYSKMPN QIATLDFNDT FFSIEHLKTS FPGHNVKVTV 751 800 ENSBTAP00000016895/1-1466 DDPALQIPPF RITFPVRSGK GKKRKDVDGE DEDTEEAKTL IVEPHVIPNR ENSP00000156471/1-1485 EDPALQIPPF RITFPVRSGK GKKRKDADVE DEDTEEAKTL IVEPHVIPNR ENSTTRP00000014034/1-1482 DDPALQIPPF RITFPVRNGK GKKRKDAEKE DEDTEEAKTL IVEPHVIPNR BACU008553/1-1485 DDPALQIPPF RITFPVRSGK GKKRKDAEKE DEDTEEAKTL IVEPHVIPNR bmy_09123T0/1-819 DDPALQIPPF ---------- ---------- ---------- ---------- 801 850 ENSBTAP00000016895/1-1466 GPYPYNQPKR NTIQFTHTQI EAIRAGMQPG LTMVVGPPGT GKTDVAVQII ENSP00000156471/1-1485 GPYPYNQPKR NTIQFTHTQI EAIRAGMQPG LTMVVGPPGT GKTDVAVQII ENSTTRP00000014034/1-1482 GPYPYNQPKR NTIQFTHTQI EAIRAGMQPG LTMVVGPPGT GKTDVAVQII BACU008553/1-1485 GPYPYNQPKR NTIQFTHTQI EAIRAGMQPG LTMVVGPPGT GKTDVAVQII bmy_09123T0/1-819 ---------R NTIQFTHTQI EAIRAGMQPG LTM------- ---------- 851 900 ENSBTAP00000016895/1-1466 SNIYHNFPEQ RTLIVTHSNQ ALNQLFEKIM ALDIDERHLL RLGHGEEELE ENSP00000156471/1-1485 SNIYHNFPEQ RTLIVTHSNQ ALNQLFEKIM ALDIDERHLL RLGHGEEELE ENSTTRP00000014034/1-1482 SNIYHNFPEQ RTLIVTHSNQ ALNQLFEKIM ALDIDERHLL RLGHGEEELE BACU008553/1-1485 SNIYHNFPEQ RTLIVTHSNQ ALNQLFEKIM ALDIDERHLL RLGHGEEELE bmy_09123T0/1-819 ---------- ---------- ALNQLFEKIM ALDIDERHLL RLGHGEEELE 901 950 ENSBTAP00000016895/1-1466 TEKDFSRYGR VNYVLARRIE LLEE-KRLQK SLGVPGDASY TCETAGYFFL ENSP00000156471/1-1485 TEKDFSRYGR VNYVLARRIE LLEEVKRLQK SLGVPGDASY TCETAGYFFL ENSTTRP00000014034/1-1482 TEKDFSRYGR VNYVLARRIK LLEEVKRLQK SLGVPGDASY TCETAGYFFL BACU008553/1-1485 TEKDFSRYGR VNYVLARRIE LLEEVKRLQK SLGVPGDASY TCETAGYFFL bmy_09123T0/1-819 TEKDFSR--- ---------- ---------- ---------- ---------- 951 1000 ENSBTAP00000016895/1-1466 YQVMSRWEEY ISKVKNKSNT MPDITEVSAF FPFHEYFANA PQPIFKGRSY ENSP00000156471/1-1485 YQVMSRWEEY ISKVKNKGST LPDVTEVSTF FPFHEYFANA PQPIFKGRSY ENSTTRP00000014034/1-1482 YQVMSRWEEY ISKVKNKGNT LPDVTEVSTF FPFHEYFANA PQPIFKGRSY BACU008553/1-1485 YQVMSRWEEY ISKVKNKGNT LPDVTEVSTF FPFHEYFANA PQPIFKGRSY bmy_09123T0/1-819 ---------- ---------- ---------- ---------- ---------- 1001 1050 ENSBTAP00000016895/1-1466 EEDMEIAEGC FRHIKKIFTQ LEEFRASELL RSGLDRSKYL LVKEAKIIAM ENSP00000156471/1-1485 EEDMEIAEGC FRHIKKIFTQ LEEFRASELL RSGLDRSKYL LVKEAKIIAM ENSTTRP00000014034/1-1482 EEDMEIAEGC FRHIKKIFTQ LEEFRASELL RSGLDRSKYL LVKEAKIIAM BACU008553/1-1485 EEDMEIAEGC FRHIKKIFTQ LEEFRASELL RSGLDRSKYL LVKEAKIIAM bmy_09123T0/1-819 ---------- ---------- ---------- ---------- ---------- 1051 1100 ENSBTAP00000016895/1-1466 TCTHAALKRH DLVKLGFKYD NILMEEAAQI LEIETFIPLL LQNPQDGFSR ENSP00000156471/1-1485 TCTHAALKRH DLVKLGFKYD NILMEEAAQI LEIETFIPLL LQNPQDGFSR ENSTTRP00000014034/1-1482 TCTHAALKRH DLVKLGFKYD NILMEEAAQI LEIETFIPLL L-NPQDGFSR BACU008553/1-1485 TCTHAALKRH DLVKLGFKYD NILMEEAAQI LEIETFIPLL LQNPQDGFSR bmy_09123T0/1-819 ---------- ---------- ---------- ---------- ---------- 1101 1150 ENSBTAP00000016895/1-1466 LKRWIMIGDH HQLPPVIKNM AFQKYSNMEQ SLFTRFVRVG VPTVDLDAQG ENSP00000156471/1-1485 LKRWIMIGDH HQLPPVIKNM AFQKYSNMEQ SLFTRFVRVG VPTVDLDAQG ENSTTRP00000014034/1-1482 LKRWIMIGDH HQLPPVIKNM AFQKYSNMEQ SLFTRFVRVG VPTVDLDAQG BACU008553/1-1485 LKRWIMIGDH HQLPPVIKNM AFQKYSNMEQ SLFTRFVRVG VPTVDLDAQG bmy_09123T0/1-819 ---------- ---------- ---------- ---------- ---------- 1151 1200 ENSBTAP00000016895/1-1466 RARASLCNLY NWRYKNLGNL PHVQLLLEFS TANAGLLYDF QLINVEDFQG ENSP00000156471/1-1485 RARASLCNLY NWRYKNLGNL PHVQLLPEFS TANAGLLYDF QLINVEDFQG ENSTTRP00000014034/1-1482 RARASLCNLY NWRYKNLGNL PHVQLLPEFS TANAGLLYDF QLINVEDFQG BACU008553/1-1485 RARASLCNLY NWRYKNLGNL PHVQLLPEFS TANAGLLYDF QLINVEDFQG bmy_09123T0/1-819 ---------- ---------- ---------- ---------- ---------- 1201 1250 ENSBTAP00000016895/1-1466 VGESEPNPYF YQNLGEAEYV VALFMYMCLL GYPADKISIL TTYNGQKHLI ENSP00000156471/1-1485 VGESEPNPYF YQNLGEAEYV VALFMYMCLL GYPADKISIL TTYNGQKHLI ENSTTRP00000014034/1-1482 VGESELNHYF YQXXXXAEYV VALFMYMCLL GY-ADKISIL TTYNGQKHLI BACU008553/1-1485 VGESEPNPYF YQNLGEAEYV VALFMYMCLL GYPADKISIL TTYNGQKHLI bmy_09123T0/1-819 ---------- ---------- ---------- ---------- ---------- 1251 1300 ENSBTAP00000016895/1-1466 RDIINRRCGS NPLIGRPNKV TTVDRFQGQQ NDYILLSLVR TRAVGHLRDV ENSP00000156471/1-1485 RDIINRRCGN NPLIGRPNKV TTVDRFQGQQ NDYILLSLVR TRAVGHLRDV ENSTTRP00000014034/1-1482 RDIINRRCGS NPLIGRPNKV TTVDRFQGQQ NDYILLSLVR TRAVGHLRDV BACU008553/1-1485 RDIINRRCGS NPLIGRPNKV TTVDRFQGQQ NDYILLSLVR TRAVGHLRDV bmy_09123T0/1-819 ---------- ---------- ---------- ---------- ---------- 1301 1350 ENSBTAP00000016895/1-1466 RRLVVAMSRA RLGLYIFARV SLFQNCFELT PAFSQLTARP LHLHIIPTEP ENSP00000156471/1-1485 RRLVVAMSRA RLGLYIFARV SLFQNCFELT PAFSQLTARP LHLHIIPTEP ENSTTRP00000014034/1-1482 RRLVVAMSRA RLGLYIFARV SLFQNCFELT PAFSQLTARP LHLHIIPTEP BACU008553/1-1485 RRLVVAMSRA RLGLYIFARV SLFQNCFELT PAFSQLTARP LHLHIIPTEP bmy_09123T0/1-819 ---------- ---------- ---------- ---------- ---------- 1351 1400 ENSBTAP00000016895/1-1466 FPTSRKNGER PSHEVQIIKN MPQMANFVYN MYMHLIQTTH HYHQTLLQLP ENSP00000156471/1-1485 FPTTRKNGER PSHEVQIIKN MPQMANFVYN MYMHLIQTTH HYHQTLLQLP ENSTTRP00000014034/1-1482 FPTSRKNGER PSHEVQIIKN MPQMANFVYN MYMHLIQTTH HYHQTLLQLP BACU008553/1-1485 FPTSRKNGER PSHEVQIIKN MPQMANFVYN MYMHLIQTTH HYHQTLLQLP bmy_09123T0/1-819 ---------- ---------- ---------- ---------- ---------- 1401 1450 ENSBTAP00000016895/1-1466 PAMVEESEEV QSQETELETE EEAMSAQADI VPDEATDASS SQETSASETE ENSP00000156471/1-1485 PAMVEEGEEV QNQETELETE EEAMTVQADI IPS-PTDTSC RQETPAFQTD ENSTTRP00000014034/1-1482 PAMLEEGEEV QSQETELETE EEATPAQADI VPS-LTDASS SQETSASQTE BACU008553/1-1485 PAMVEEGEEV QSQETELETE EEATPAQVDI VPS-LTDASS SQETSASQTE bmy_09123T0/1-819 ---------- ---------- ---------- ---------- ---------- 1451 1500 ENSBTAP00000016895/1-1466 TTPNQTGASS SPEAIPAESE ITGT--GPVT VPSENNTPHD VTSTPGETE ENSP00000156471/1-1485 TTPSETGATS TPEAIPALSE TTPTVVGAVS APAEANTPQD ATSAPEETK ENSTTRP00000014034/1-1482 TIPSHTGDSS SSGAIPTESE ITATVAEPVA VPAENNTPQD ATSAPRETK BACU008553/1-1485 TIPNHTGASS SSEAIPTVSE ITATVAEPVA VPVENNTPQD ATSAPRETK bmy_09123T0/1-819 ---------- ---------- ---------- ---------- ---------