KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 17:00:00 2014 Check: 00 .. Name: BACU008639/1-833 Len: 834 Check: 3895 Weight: 1.00 Name: ENSBTAP00000016915/1-548 Len: 834 Check: 8431 Weight: 1.00 Name: ENSP00000262713/1-538 Len: 834 Check: 7069 Weight: 1.00 Name: bmy_13934T0/1-557 Len: 834 Check: 8349 Weight: 1.00 Name: ENSTTRP00000001419/1-537 Len: 834 Check: 2789 Weight: 1.00 // 1 50 BACU008639/1-833 MERLGEKASR LLEKLRLSDS GSAKFGRRKG ESSRSGSDGT PGPGKGRLSG ENSBTAP00000016915/1-548 MERLGEKASR LLEKLRLSDS GSAKFGRRKG ESSRSGSDGT PGPGKGRLSG ENSP00000262713/1-538 MERLGEKASR LLE------- ---KFGRRKG ESSRSGSDGT PGPGKGRLSG bmy_13934T0/1-557 MERLGEKASR LLEKLRLSDS GSAKFGRRKG ESSRSGSDGT PGPGKGRLSG ENSTTRP00000001419/1-537 MERLGEKASR LLE------- ---KFGRRKG ESSRSGSDGT PGPGKGRLSG 51 100 BACU008639/1-833 LGGPRKSGPR GATGGPGDEP LEPAREQGPL DAERNPRGSF EAPRYEGSFP ENSBTAP00000016915/1-548 LGGPRKSGPR GAAGGPGDEP LEPAREQGPL DAERNPRGSF EVPRYEGSFP ENSP00000262713/1-538 LGGPRKSGPR GATGGPGDEP LEPAREQGSL DAERNQRGSF EAPRYEGSFP bmy_13934T0/1-557 LGGPSKSGPR GATGGPGDEP LEPAREQGPL DAERNPRGSF EAPRYEGSFP ENSTTRP00000001419/1-537 LGGPRKSGPR GATGGPGDEP LEPAREQGPL DAERNPRGSF EAPRYEGSFP 101 150 BACU008639/1-833 GGPPSTRALP LPQSLPPDFR LE-TAPALSP RSSFASSSAS DASKPSSPRG ENSBTAP00000016915/1-548 GGPPPSRALP LPQSLPPDFR LETTAPALSP RSSFASSSAS DASKPSSPRG ENSP00000262713/1-538 AGPPPTRALP LPQSLPPDFR LEPTAPALSP RSSFASSSAS DASKPSSPRG bmy_13934T0/1-557 GGPPSTRALP LPQSLPPDFR LE-TAPALSP RSSFASSSAS DASKPSSPRG ENSTTRP00000001419/1-537 GGPPPTRALP LPQSLPPDFR LE-TAPALSP RSSFASSSAS DASKPSSPRG 151 200 BACU008639/1-833 SLLLDGAGAG GAGGSRPCSN RTSGISMGYD QRHGSPLPAG PCLFGPPLAG ENSBTAP00000016915/1-548 SLLLDGAGAG GAGGSRPCSN RTSGISMGYD QRHGSPLPAG PCLFGPPLAG ENSP00000262713/1-538 SLLLDGAGAG GAGGSRPCSN RTSGISMGYD QRHGSPLPAG PCLFGPPLAG bmy_13934T0/1-557 SLLLDGAGAG GAGGSRPCSN RTSGISMGYD QRHGSPLPAG PCLFGPPLAG ENSTTRP00000001419/1-537 SLLLDGAGAG GAGGSRPCSN RTSGISMGYD QRHGSPLPAG PCLFGPPLAG 201 250 BACU008639/1-833 VPAGYSSGGV PSAYPELHAA LDRLCAHRPA GFGCQESRHS YPPALGSPGA ENSBTAP00000016915/1-548 VPAGYSSGGV PSAYPELHAA LDRLCAHRPA GFGCQESRHS YPPALGSPGA ENSP00000262713/1-538 APAGYSPGGV PSAYPELHAA LDRLYAQRPA GFGCQESRHS YPPALGSPGA bmy_13934T0/1-557 VPAGYSSGGV PSAYPELHAA LDRLCAHRPA GFGCQESRHS YPPALGSPGA ENSTTRP00000001419/1-537 VPAGYSSGGV PSAYPELHAA LDRLCAHRPA GFGCQESRHS YPPALGSPGA 251 300 BACU008639/1-833 LAGAGVGAAG PLERRGAQPG RHSVTGYGDC AAGARYQDEL TALLRLTVGT ENSBTAP00000016915/1-548 LAGAGVGATG PLERRGAQPG RHSVTGYGDC AAGARYQDEL TALLRLTVGT ENSP00000262713/1-538 LAGAGVGAAG PLERRGAQPG RHSVTGYGDC AVGARYQDEL TALLRLTVGT bmy_13934T0/1-557 LAGAGVGAAG PLERRGAQPG RHSVTGYGDC AAGARYQDEL TALLRLTVGT ENSTTRP00000001419/1-537 LAGAGVGAAG PLERRGAQPG RHSVTGYGDC AAGARYQDEL TALLRLTVGT 301 350 BACU008639/1-833 GGREAGARGE PSGIEPSGLE EPPGAFVPEA ARARMREPES REDYFGTCIK ENSBTAP00000016915/1-548 GGREAGVRGE SAGIEASGLE EPPGAFVPEA ARARIREPES REDYFGTCIK ENSP00000262713/1-538 GGREAGARGE PSGIEPSGLE EPPGPFVPEA ARARMREPEA REDYFGTCIK bmy_13934T0/1-557 GGREAGARGE PSGIEPSGLE EPPGAFVPEA ARARMREPES REDYFGTCIK ENSTTRP00000001419/1-537 GGREAGARGE PSGIEPSGLE EPPGAFVPEA ARARMREPES REDYFGTCIK 351 400 BACU008639/1-833 CNKGIYGQSN ACQALDSLYH TQCFVCCSCG RTLRCKAFYS VNGSVYCEED ENSBTAP00000016915/1-548 CNKGIYGQSN ACQALDSLYH TQCFVCCSCG RTLRCKAFYS VNGSVYCEED ENSP00000262713/1-538 CNKGIYGQSN ACQALDSLYH TQCFVCCSCG RTLRCKAFYS VNGSVYCEED bmy_13934T0/1-557 CNKGIYGQSN ACQALDSLYH TQCFVCCSCG RTLRCKAFYS VNGSVYCEED ENSTTRP00000001419/1-537 CNKGIYGQSN ACQALDSLYH TQCFVCCSCG RTLRCKAFYS VNGSVYCEED 401 450 BACU008639/1-833 YLFSGFQEAA EKCCVCGHLI LEKILQAMGK SYHPGCFRCI VCNKCLDGIP ENSBTAP00000016915/1-548 YLFSGFQEAA EKCCVCGHLI LEKILQAMGK SYHPGCFRCI VCNKCLDGIP ENSP00000262713/1-538 YLFSGFQEAA EKCCVCGHLI LEKILQAMGK SYHPGCFRCI VCNKCLDGIP bmy_13934T0/1-557 YLFSGFQEAA EKCCVCGHLI LEKILQAMGK SYHPGCFRCI VCNKCLDGIP ENSTTRP00000001419/1-537 YLFSGFQEAA EKCCVCGHLI LEKILQAMGK SYHPGCFRCI VCNKCLDGIP 451 500 BACU008639/1-833 FTVDFSNQVY CVTDYHKNYA PKCAACGQPI LPSEGCEDIV RVISMDRDYH ENSBTAP00000016915/1-548 FTVDFSNQVY CVTDYHKSYA PKCAACGQPI LPSEGCEDIV RVISMDRDYH ENSP00000262713/1-538 FTVDFSNQVY CVTDYHKNYA PKCAACGQPI LPSEGCEDIV RVISMDRDYH bmy_13934T0/1-557 FTVDFSNQVY CVTDYHKNYA PKCAACGQPI LPSEGCEDIV RVISMDRDYH ENSTTRP00000001419/1-537 FTVDFSNQVY CVTDYHKNYA PKCAACGQPI LPSEGCEDIV RVISMDRDYH 501 550 BACU008639/1-833 FECYHCENPH FSKLLLSLSQ HMDESGLSLT LAKEQAQAWK EVRLHKTTWL ENSBTAP00000016915/1-548 FECYHCED-- -CRMQLS--- --DEEGCC-- ---------- ---------- ENSP00000262713/1-538 FECYHCED-- -CRMQLS--- --DEEGCC-- ---------- ---------- bmy_13934T0/1-557 FECYHCED-- -CRMQLS--- --DEEGCC-- ---------- ---------- ENSTTRP00000001419/1-537 FECYHCED-- -CRMQLS--- --DEEGCC-- ---------- ---------- 551 600 BACU008639/1-833 RSEILQRVIQ ELLVDYYVKS QDRNLTSEDK KFHETLEQRL LVTELTQLLG ENSBTAP00000016915/1-548 ---------- ---------- ---------- ---------- ---------- ENSP00000262713/1-538 ---------- ---------- ---------- ---------- ---------- bmy_13934T0/1-557 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000001419/1-537 ---------- ---------- ---------- ---------- ---------- 601 650 BACU008639/1-833 PSQEREVPPL LGLEKVDLLE LMPPSEDFVW MRARLLLEVE EQLKKKCFTL ENSBTAP00000016915/1-548 ---------- ---------- ---------- ---------- ------CFP- ENSP00000262713/1-538 ---------- ---------- ---------- ---------- ------CFP- bmy_13934T0/1-557 ---------- ---------- ---------- ---------- ------CFP- ENSTTRP00000001419/1-537 ---------- ---------- ---------- ---------- ------CFP- 651 700 BACU008639/1-833 LCYHNPSSDS DSETLKAAKV WNLAEVLVGE KQQCQDARSQ QKEQMVLLEK ENSBTAP00000016915/1-548 ---------- ---------- ---------- ---------- ---------- ENSP00000262713/1-538 ---------- ---------- ---------- ---------- ---------- bmy_13934T0/1-557 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000001419/1-537 ---------- ---------- ---------- ---------- ---------- 701 750 BACU008639/1-833 KSATYSQVLL RCLALLQRLL QEHRLKTQSE LDRINAQYLE IKCSAMILKL ENSBTAP00000016915/1-548 ---------- ---------L DGHLLCHGCH MQRLSA---- ---------- ENSP00000262713/1-538 ---------- ---------L DGHLLCHGCH MQRLNA---- ---------- bmy_13934T0/1-557 ---------- ---------L DGHLLCHGCH MQRLNA---- ---------- ENSTTRP00000001419/1-537 ---------- ---------L DGHLLCHGCH MQRLNA---- ---------- 751 800 BACU008639/1-833 RMEELKILSD TYTDEKVEVH RLIRDRLEGA IHLQEQDMEK SRQVLNTYEV ENSBTAP00000016915/1-548 ---------- ---------- ---------- ---------- -RQPPANY-- ENSP00000262713/1-538 ---------- ---------- ---------- ---------- -RQPPANY-- bmy_13934T0/1-557 ---------- ---------- ---------- ---------- -RQPPANY-- ENSTTRP00000001419/1-537 ---------- ---------- ---------- ---------- -RQPPANY-- 801 850 BACU008639/1-833 LGEEFDRLVK EYTQLKQATE NKRWALQEFS KACR ENSBTAP00000016915/1-548 ---------- ---------- ---I------ ---- ENSP00000262713/1-538 ---------- ---------- ---I------ ---- bmy_13934T0/1-557 ---------- ---------- ---WVGQKVP SVFK ENSTTRP00000001419/1-537 ---------- ---------- ---I------ ----