KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 17:00:02 2014 Check: 00 .. Name: ENSTTRP00000014022/1-605 Len: 854 Check: 5891 Weight: 1.00 Name: ENSP00000225296/1-707 Len: 854 Check: 4127 Weight: 1.00 Name: ENSBTAP00000016932/1-714 Len: 854 Check: 8195 Weight: 1.00 Name: BACU001302/1-793 Len: 854 Check: 743 Weight: 1.00 Name: bmy_08626T0/1-622 Len: 854 Check: 1906 Weight: 1.00 // 1 50 ENSTTRP00000014022/1-605 ---------M PKXXXXXXXX XXXX------ ---------- ---------- ENSP00000225296/1-707 ---------M PEEAGFPPAK RFRP------ ---------- ---------- ENSBTAP00000016932/1-714 RLPSRCPPDM PEEAGFPPAK KFRP------ ---------- ---------- BACU001302/1-793 ---MAYQSLR LEYLQIPPVS RAYTTACVLT TAAVVSSCSA SFSLSGLDIT bmy_08626T0/1-622 ---------M PEEAGFPPAK RFRP------ ---------- ---------- 51 100 ENSTTRP00000014022/1-605 -----XXXXX ---------- ---------- ---------- ---XXXXXX- ENSP00000225296/1-707 -----GSGPP ---------- ---------- ---------- ---SRAGSF- ENSBTAP00000016932/1-714 -----SAGPP ---------- ---------- ---------- ---SRARSC- BACU001302/1-793 GSSGNGFGPP GSSEGLVSKL FGLFVSLVFL GQAFTIMLVY VWSRRNPYVR bmy_08626T0/1-622 -----GAGPP ---------- ---------- ---------- ---RRAGSC- 101 150 ENSTTRP00000014022/1-605 ---------- ---------- ---------- ---------- ---------- ENSP00000225296/1-707 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000016932/1-714 ---------- ---------- ---------- ---------- ---------- BACU001302/1-793 MNFFGLLNFQ APFLPWVLMG FSLLLGNSII VDLLGIAVGH IYFFLEDVFP bmy_08626T0/1-622 ---------- ---------- ---------- ---------- ---------- 151 200 ENSTTRP00000014022/1-605 --XXXXXXXX ---XXXX--- ---------- ----XXXXXX XXXXXXXXXX ENSP00000225296/1-707 --PPGRQVVM ---LLTA--- ---------- ----GSGGRG GGGGRRQQPP ENSBTAP00000016932/1-714 --PPGRRAVM ---LLAA--- ---------- ------GAGG GGGGRRQQPP BACU001302/1-793 NQPGGIRILK TPSILKAIFD TPDEDPNYNP LPEERPGGFA WGGGRRQQQP bmy_08626T0/1-622 --PPGRRVVM ---LLAA--- ---------- ------GGSG GGGGRRQQLP 201 250 ENSTTRP00000014022/1-605 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXETGSGKT ENSP00000225296/1-707 LAQPSASPYP EAVELQRRSL PIFQARGQLL AQLRNLDNAV LIGETGSGKT ENSBTAP00000016932/1-714 LAQPSASPYP EAVEQQRRNL PIFQARGQLL AQLRNLDSAV LIGETGSGKT BACU001302/1-793 LPQPSASPYP EAVELQRRSL PIFQARGQLL AQLRNLDSAV LLGETGSGKT bmy_08626T0/1-622 LAQPSASPYP EAVELQRRSL PIFQARGQLL AQLRNLDSAV LL-------- 251 300 ENSTTRP00000014022/1-605 TQIPQYLYEG GIGRQAIIAV TQPRRVAAIS LATRVSDEKR TELGKLVGYT ENSP00000225296/1-707 TQIPQYLYEG GISRQGIIAV TQPRRVAAIS LATRVSDEKR TELGKLVGYT ENSBTAP00000016932/1-714 TQIPQYLYEG GIGRQAIIAV TQPRRVAAIS LATRVSDEKR TELGKLVGYT BACU001302/1-793 TQIPQYLYEG GIGRQAIIAV TQPRRVAAIS LATRVSDEKR TELGKLVGYT bmy_08626T0/1-622 ---------G GIGRQAIIAV TQPRRVAAIS LATRVSDEKR TELGKL---- 301 350 ENSTTRP00000014022/1-605 VRFDDVTSED TKIKFLTDGM LLREAISDSL LRKYSCVILD EAHERTIHTD ENSP00000225296/1-707 VRFDDVTSED TRIKFLTDGM LLREAISDSL LRKYSCVILD EAHERTIHTD ENSBTAP00000016932/1-714 VRFDDVTSDD TKIKFLTDGM LLREAISDCL LRKYSCIILD EAHERTLHTD BACU001302/1-793 VRFDDVTSED TKIKFLTDGM LLREAISDSL LRKYSCVILD EAHERTIHTD bmy_08626T0/1-622 ---------- ---------- ---------- ---YSCVILD EAHERTIHTD 351 400 ENSTTRP00000014022/1-605 VLFGVVKAAQ KRRKELGKLP LKVIVMSATM DVDLFSQYFS GAPVLYLEGR ENSP00000225296/1-707 VLFGVVKAAQ KRRKELGKLP LKVIVMSATM DVDLFSQYFN GAPVLYLEGR ENSBTAP00000016932/1-714 VLFGVVKAAQ KRRKELGKLP LKVLVMSATM DVDLFSQYFN GAPVLYLEGR BACU001302/1-793 VLFGVVKAAQ KRRKELGKLP LKVIVMSATM DVDLFSQYFS GAPVLYLEGR bmy_08626T0/1-622 VLFGVVKAAQ KRRKELGKLP LKVIVMSATM DVDLFSQYFS GAPVLYLEGR 401 450 ENSTTRP00000014022/1-605 QHPIQIFYTK QPQHDYLHAA LVSVFQIHQE APSSQDILVF LTGQEEIEAM ENSP00000225296/1-707 QHPIQVFYTK QPQNDYLHAA LVSVFQIHQE APSSQDILVF LTGQEEIEAM ENSBTAP00000016932/1-714 QHPIQIFYTK QPQHDYLHAA LVSVFQIHQE APSSHDILVF LTGQEEIEAM BACU001302/1-793 QHPIQIFYTK QPQHDYLHAA LVSVFQIHQE APCSQDILVF LTGQEEIEAM bmy_08626T0/1-622 QHPIQIFYTK QPQHDYLHAA LVSVFQIHQE APCSQDILVF LTGQEEIEAM 451 500 ENSTTRP00000014022/1-605 SKTCRDIAKH LPDGCPSMLV LPLYASLPYA QQLRVFQGAP KGCRKVIIST ENSP00000225296/1-707 SKTCRDIAKH LPDGCPAMLV LPLYASLPYA QQLRVFQGAP KGYRKVIIST ENSBTAP00000016932/1-714 SKTCRDIAKH LPDGCPSMLV LPLYASLPYA QQLRVFQRAP KGYRKVIIST BACU001302/1-793 SKTCRDIAKH LPDGCSSMLV LPLYASLPYA QQLRVFQGAP KGCRKVIIST bmy_08626T0/1-622 SKTCRDIAKH LPDGCPSMLV LPLYASLPYA QQLRVFQGAP KGCRKVIIST 501 550 ENSTTRP00000014022/1-605 NIAETSITIT GIKYVVDTGM VKAKKYNPDS GLEVLAVQRV SKTQAWQRTG ENSP00000225296/1-707 NIAETSITIT GIKYVVDTGM VKAKKYNPDS GLEVLAVQRV SKTQAWQRTG ENSBTAP00000016932/1-714 NIAETSITIT GIKYVVDTGM VKAKKYNPDS GLEVLAVQRV SKTQAWQRTG BACU001302/1-793 NIAETSITIT GIKYVVDTGM VKAKKYNPDS GLEVLAVQRV SKTQAWQRTG bmy_08626T0/1-622 NIAETSITIT GIKYVVDTGM VKAKKYNPDN GLEVLAVQRV SKTQAWQRTG 551 600 ENSTTRP00000014022/1-605 RAGREDSGIC YRLYTEDEFE KFEKMTVPEI QRCNLASVML QLLAMKVPNV ENSP00000225296/1-707 RAGREDSGIC YRLYTEDEFE KFDKMTVPEI QRCNLASVML QLLAMKVPNV ENSBTAP00000016932/1-714 RAGREDSGIC YRLYTEDEFE KFEKMTVPEI QRCNLASVML QLLAMKIPNV BACU001302/1-793 RAGREDSGVC YRLYTEDEFE KFEKMTVPEI QRCNLTSVTL QLLAMKVPDV bmy_08626T0/1-622 RAGREDSGVC YRLYTEDEFE KFEKMTVPEI QRCNLTSVML QLLAMKVPDV 601 650 ENSTTRP00000014022/1-605 LTFDFMSKPS PXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX ENSP00000225296/1-707 LTFDFMSKPS PDHIQAAIAQ LDLLGALEHK DDQLTLTPMG RKMAAFPLEP ENSBTAP00000016932/1-714 LTFDFMSKPS PDHIQAAIAQ LELLGALEHR DGQLTLTPMG RKMAAFPLEP BACU001302/1-793 LTFDFMSKPS PDHIQAAIAQ LELLGALENK DGQLTLTPIG RKMAAFPLEP bmy_08626T0/1-622 LTFDFMSKPS PDHIQAAIAQ LELLGALENK DGQLTLTPIG RKMAAFPLEP 651 700 ENSTTRP00000014022/1-605 XXXXTILLSP KFHCTEEILT IISLLSVDSV LYNPPSRRDE VQAVRKKFIS ENSP00000225296/1-707 KFAKTILMSP KFHCTEEILT IVSLLSVDSV LHNPPSRREE VQGVRKKFIS ENSBTAP00000016932/1-714 KFAKTILLSP KFHCTEEILT IVALLSVDSI LYNPPSRRDE VQSVRKKFVS BACU001302/1-793 KFAKTILLSP KFHCTEEILT IISLLSVDSV LYNPPSRRDE VQAVRKKFIS bmy_08626T0/1-622 KFAKTILLSP KFHCTEEILT IISLLSVDSV LYNPPSRRDE VQAVRKKFIS 701 750 ENSTTRP00000014022/1-605 SEGDHITLLN IYRAFKNTGG NK-------- ---------- ---------- ENSP00000225296/1-707 SEGDHMTLLN IYRTFKNLGG NKDWCKENFV NSKNMTLVAE VRAQLRDICL ENSBTAP00000016932/1-714 SEGDHLTLLN VYRTFKNTGG NKEWCKENFV NSKNMMLVAE VRAQLRDICI BACU001302/1-793 SEGDHITLLN IYRAFKNTGR NK-------- ---------- ---------- bmy_08626T0/1-622 SEGDHITLLN IYRAFKNTGR NK-------- ---------- ---------- 751 800 ENSTTRP00000014022/1-605 ---------- ------DWC- ---------- ---KENFVHS KNMMLVAEVR ENSP00000225296/1-707 KMSMPIASSR GDVESVRRCL AHSLFMSTAE LQPDGTYATT DTHQPVAIHP ENSBTAP00000016932/1-714 KMSMPIVSSR GDTESIRRCL AHSLFTSTAE LQPDGSYATT DTHQPVAIHP BACU001302/1-793 ---------- ------DWC- ---------- ---KENFVNS KNMMLVAEVR bmy_08626T0/1-622 -MSMPILSSR GDTESVRRCL AHSLFVSTAE LQPDGSYATT DTHQPVAIHP 801 850 ENSTTRP00000014022/1-605 SQLRDICLK- ---------- ---------- ---------- ---------- ENSP00000225296/1-707 SSVLFHC-KP ACVVYTELLY TNKCYMRDLC VIDAQWLYEA APEYFRRKLR ENSBTAP00000016932/1-714 SSVLFHC-KP ACVVYTELLF TSKCYMRDLC VVDAEWLYEA APDFFRKKLR BACU001302/1-793 SQLRDICFKP ACVAYTELLF TNKCYMRDLC VVDAEWLYEA APDFFRRKLR bmy_08626T0/1-622 SSVLFHC-KP ACVVYTELLF TNKCYMRDLC VVDAEWLYEA APDFFRRKLR 851 900 ENSTTRP00000014022/1-605 ---- ENSP00000225296/1-707 TARN ENSBTAP00000016932/1-714 TARN BACU001302/1-793 ASRN bmy_08626T0/1-622 ASRN