KEY:
ENSP* - Homo sapiens (Human)
ENSBTA* - Bos taurus (Cow)
ENSTTR* - Tursiops truncatus (Dolphin)
bmy_* - Balaena mysticetus (Bowhead whale)
BACU* - Balaenoptera acutorostrata (Minke whale)
Copy from below the line for a valid .msf file.
----------------------------------------------------------------------------------
NoName MSF: 5 Type: P Thu May 15 17:00:03 2014 Check: 00 ..
Name: bmy_03475T0/1-628 Len: 1095 Check: 557 Weight: 1.00
Name: ENSBTAP00000016933/1-1083 Len: 1095 Check: 3075 Weight: 1.00
Name: ENSP00000368761/1-1077 Len: 1095 Check: 735 Weight: 1.00
Name: BACU013555/1-799 Len: 1095 Check: 3312 Weight: 1.00
Name: ENSTTRP00000000586/1-1007 Len: 1095 Check: 4081 Weight: 1.00
//
1 50
bmy_03475T0/1-628 MSTTPFECLH ARLLLAWGVN LIFLIPPDIS RQDEAEGELS EGEHWYGNSS
ENSBTAP00000016933/1-1083 VPLRSQGEIV PLRN------ -----QEYVS RQDEAEGELS EGEHWYGNSS
ENSP00000368761/1-1077 MPRRKQE--Q PKRL------ -----PSHVS RQEEAEGELS EGEHWYGNSS
BACU013555/1-799 MPRRKQE--Q PKRL------ -----PSHIS RQDEAEGELS EGEHWYGNSS
ENSTTRP00000000586/1-1007 -PRRRET--K LIFL------ -----NSDIS RQDEAEGELS EGEHWYGNSS
51 100
bmy_03475T0/1-628 ETPSEASYGE VQENYKLSLE DRIQEQSTSP DTSLGSGTPS SHTLELVALD
ENSBTAP00000016933/1-1083 ETPSEASYGE VQENYKLCLE DRIQEQSTSP DTSLGSATPS SHTLELVALD
ENSP00000368761/1-1077 ETPSEASYGE VQENYKLSLE DRIQEQSTSP DTSLGSTTPS SHTLELVALD
BACU013555/1-799 ETPSEASYGE VQENYKLSLE DRIQEQSTSP DTSLGSGTPS SHTLELVALD
ENSTTRP00000000586/1-1007 ETPSEASYGE VQENYKLSLE DRIQEQSTSP DTSLGSGTPS SHTLELVALD
101 150
bmy_03475T0/1-628 GEVLRDPLQC PDHLSPGVSS LCDDDPAGST KPLSSNLRRL LEAGSLKLDA
ENSBTAP00000016933/1-1083 GEVLRDPLQC PDHLSPGVSS LCEEDHPGST KPLSSNLRRL LEAGSLKLDA
ENSP00000368761/1-1077 SEVLRDSLQC QDHLSPGVSS LCDDDP-GSN KPLSSNLRRL LEAGSLKLDA
BACU013555/1-799 GEVLRDPLQC PDHLSPGVSS LCDDDPAGST KPLSSNLRRL LEAGSLKLDA
ENSTTRP00000000586/1-1007 GEVLRDPLQC PDHLSPGVSS LCDDDPAGST KPLSSNLRRL LEAGSLKLDA
151 200
bmy_03475T0/1-628 TATANGRVES PVNVGSKLSF SPPSHHAQQL SVLARKLAEK HEQNDQYTPS
ENSBTAP00000016933/1-1083 AATANGRVES PVNAGSNLSF SPPSHHAQQL SVLARKLAEK QEQNDQYPPS
ENSP00000368761/1-1077 AATANGRVES PVNVGSNLSF SPPSHHAQQL SVLARKLAEK QEQNDQYTPS
BACU013555/1-799 TATANGRVES PVNVGSNLSF SPPSHHAQQL SVLARKLAEK QEQNDQYTPS
ENSTTRP00000000586/1-1007 TATANGRVES PVNV-SNLSF SPPSHHAQQL SVLARKLAEK XXXXXXXXXX
201 250
bmy_03475T0/1-628 NRFLWNQGKW LPNSTTTCGL SPDSAILKLK AAANAVLQDK SLTRTEETMR
ENSBTAP00000016933/1-1083 NRFLWNQGKW LPNSTTTCGL SPDSAILKLK AAANAVLQDK SLTRTEETVR
ENSP00000368761/1-1077 NRFIWNQGKW LPNSTTTCSL SPDSAILKLK AAANAVLQDK SLTRTEETMR
BACU013555/1-799 NRFLWNQGKW LPNSTTTCGL SPDSAILKLK AAANAVLQDK SLTRTEETTR
ENSTTRP00000000586/1-1007 XXXXXNQGKW LPNSTTTCGL SPDSAILKLK AAANAVLQDK SLTRTEETMR
251 300
bmy_03475T0/1-628 FESFSSPFSS QSASSTLAAL SKKVSERSLT PGQEHPPPAS SFLSLASMTS
ENSBTAP00000016933/1-1083 FESFSSPFSS QSASSTLAAL SKKVSERSLT PGQEHPPPAS SFLSLASMTS
ENSP00000368761/1-1077 FESFSSPFSS QSASSTLAAL SKKVSERSLT PGQEHPPPAS SFLSLASMTS
BACU013555/1-799 FESFSSPFSS QSASSTLAAL SKKVSERSLT PGQEHPPPAS SFLSLASMTS
ENSTTRP00000000586/1-1007 FESFSSPFSS QSASSTLAAL SKKVSERSLT PGQEHPPPAS SFLSLASMTS
301 350
bmy_03475T0/1-628 SAALLKEVAA RAAGTLLAEK SSLVPEDPLP PPPSEKKQDK VT---PPPPP
ENSBTAP00000016933/1-1083 SAALLKEVAA RAAGTLLAEK SSLVPEDPLP PPPSEKKQEK VTPPPPPPPP
ENSP00000368761/1-1077 SAALLKEVAA RAAGSLLAEK SSLLPEDPLP PPPSEKKPEK VTPPPPPPPP
BACU013555/1-799 SAALLKEVAA RAAGTLLAEK SSLVPEDPLP PPPSEKKQDK VT---PPPPP
ENSTTRP00000000586/1-1007 SAALLKEVAA RAAGTLLAEK SSLVPEDPLP PPPSEKKQDK VT--------
351 400
bmy_03475T0/1-628 PPPPPPPQSL ELLLLPVPKG RVSKPSNSAS EEESGKPFQC PICGLVIKRK
ENSBTAP00000016933/1-1083 PPPPPPPQSL ELLLLPVPKG RVSKPSNSAS EEESGKPFQC PICGLVIKRK
ENSP00000368761/1-1077 PPPPPPPQSL ELLLLPVPKG RVSKPSNSAS EEESGKPFQC PICGLVIKRK
BACU013555/1-799 PPPPPPPQSL ELLLLPVPKG RVSKPSNSAS EEESGKPFQC PICGLVIKRK
ENSTTRP00000000586/1-1007 -PPPPPPQSL ELLLLPVPKG RVSKPSNSAS EEESGKPFQC PICGLVIKRK
401 450
bmy_03475T0/1-628 SYWKRHMVIH TGLKSHQCPL CPFRCARKDN LKSHMKVHQH QDRGETFQCQ
ENSBTAP00000016933/1-1083 SYWKRHMVIH TGLKSHQCPL CPFRCARKDN LKSHMKVHQH QDRGETFQCQ
ENSP00000368761/1-1077 SYWKRHMVIH TGLKSHQCPL CPFRCARKDN LKSHMKVHQH QDRGETFQCQ
BACU013555/1-799 SYWKRHMVIH TGLKSHQCPL CPFRCARKDN LKSHMKVHQH QDRGETFQCQ
ENSTTRP00000000586/1-1007 SYWKRHMVIH TGLKSHQCPL CPFRCARKDN LKSHMKVHQH QDRGETFQCQ
451 500
bmy_03475T0/1-628 LCPFTSSRHF SLKLHMRCHQ HFLRTEAKVK EEIPDPDVKG SPHLSDSTCL
ENSBTAP00000016933/1-1083 LCPFTSSRHF SLKLHMRCHQ HFLRTEAKVK EETPDPEAKG PPHLSDSACL
ENSP00000368761/1-1077 LCPFTSSRHF SLKLHMRCHQ HFLRTEAKVK EEIPDPDVKG SPHLSDSACL
BACU013555/1-799 LCPFTSSRHF SLKLHMRCHQ HFLRTEAKVK EEIPDPDVKG SPHLSDSPCL
ENSTTRP00000000586/1-1007 LCPFTSSRHF SLKLHMRCHQ HFLRTEAKVK EEIPDPDVKG SPHLSDSACL
501 550
bmy_03475T0/1-628 GQQREGGGTE LVGTMMKSST PERTSQGGAG VSPLLVKEEP KEDNGLPTSF
ENSBTAP00000016933/1-1083 GQQREGGGTE LVGTMMKSST PERTSQGGAG VSPLLVKEEP KEDNGLPTSF
ENSP00000368761/1-1077 GQQREGGGTE LVGTMMTSNT PERTSQGGAG VSPLLVKEEP KEDNGLPTSF
BACU013555/1-799 GQQREGGGTE LVGTMMKSST PERTSQGGAG VSPLLVKEEP KEDNGLPTSF
ENSTTRP00000000586/1-1007 GQQREGGGTE LVGTMMTSST PERTSQGGAG VSPLLVKEEP KEDNGLPTSF
551 600
bmy_03475T0/1-628 TLNATDRPAN HTKLREPSEY AANSASALFS QDISVKMA-- ----------
ENSBTAP00000016933/1-1083 PLNATDRPAN HTKLREPSEF AANSASALFS QDISVKMASD FLMKLSAANQ
ENSP00000368761/1-1077 TLNAADRPAN HTKLKDPSEY VANSASALFS QDISVKMASD FLMKLSAANQ
BACU013555/1-799 TLNATDRPAN HTKLREPSDC AANSASALFS QDISVKMASD FLMKLSAANQ
ENSTTRP00000000586/1-1007 TLNATDRPAN HTKLREPSEY AANSASALFS QDISVKMASD FLMKLSAANQ
601 650
bmy_03475T0/1-628 ---------- ---------- ---------- ---------- ----------
ENSBTAP00000016933/1-1083 KEPMNLNFKI KEEPKEEETL SVTLPRSSYV FSPESEVSAA SISEDTLKPQ
ENSP00000368761/1-1077 KEPMNLNFKV KEEPKEGESL STTLPRSSYV FSPESEVSAP GVSEDALKPQ
BACU013555/1-799 KEPMNLNFKV KEEPKEEEAL SATLPRSNYV FSPESEVPAP SVSEDKLKPQ
ENSTTRP00000000586/1-1007 KEPMNLNFKV KEEPKEEEAL SATLPRSNYV FSPESEVPAP SISEDTLKPQ
651 700
bmy_03475T0/1-628 DVEGG----- ---------- -ERSAENW-- ---------- ----------
ENSBTAP00000016933/1-1083 EAKGNVLRRD MSVKAASELL MKLSAESYKD TQMVKIKEEP MEVDIQDSQV
ENSP00000368761/1-1077 EGKGSVLRRD VSVKAASELL MKLSAESYKE TQMVKIKEEP MEVDIQDSHV
BACU013555/1-799 EAKGNVLRRD MSVKAASELL MKLSAESYKD TQMVKIKEEP MEVDIQDPQA
ENSTTRP00000000586/1-1007 EAKGNVLRRD MSVKAASELL MKLSAESYKD TQMVKIKEEP MEVDIQDSQA
701 750
bmy_03475T0/1-628 ---------- ---------- ---------- ------FY-- LSVKMA----
ENSBTAP00000016933/1-1083 SISPSCNVGY STLIGREKTE PLQKLPEGRV APERNLFSQD ISVKMASELL
ENSP00000368761/1-1077 SISPSRNVGY STLIGREKTE PLQKMPEGRV PPERNLFSQD ISVKMASELL
BACU013555/1-799 SVSPSRSVGY STLIGREKTE PLQKMPEGRV PPERNLFSQD ISVKMASELL
ENSTTRP00000000586/1-1007 SISPSRSVGY STLIGREKTE PLQKMPESRV PPERNLFSQD ISVKMASELL
751 800
bmy_03475T0/1-628 --VPTMISKC H--------- ---------- ------FSSL EID----NTL
ENSBTAP00000016933/1-1083 FQLSEKVSKE HTQ-KENTIR TTTSPFFSED TFRQSPFTSN SKDLLPSESV
ENSP00000368761/1-1077 FQLSEKVSKE HNHTKENTIR TTTSPFFSED TFRQSPFTSN SKELLPSDSV
BACU013555/1-799 FQLSEKVSKE HSHTKENTIR TTTSPFFSED TFRQSPFTSN SKDLLPSESV
ENSTTRP00000000586/1-1007 FQLSEKVSKE HTHTKENTIR TTTSPFFSED TFRQSPFTSN SKDLLPSESV
801 850
bmy_03475T0/1-628 LNGE------ ---------- ---------- ---------- ----------
ENSBTAP00000016933/1-1083 LHGRISAPET EKIVLEAGNG LPSWKFNDQL FPCDVCGKVF GRQQTLSRHL
ENSP00000368761/1-1077 LHGRISAPET EKIVLEAGNG LPSWKFNDQL FPCDVCGKVF GRQQTLSRHL
BACU013555/1-799 LHGRISAPDT ---------- ---------- ---------- ----------
ENSTTRP00000000586/1-1007 LHGRISAPET EKIVLEAGNG LPSWKFNDQL FPCDVCGKVF GRQQTLSRHL
851 900
bmy_03475T0/1-628 ---------- ---------- ---------- ---------- ----------
ENSBTAP00000016933/1-1083 SLHTEERKYK CHLCPYAAKC RANLNQHLTV HSVKLVSTDT EDIVSAVTSE
ENSP00000368761/1-1077 SLHTEERKYK CHLCPYAAKC RANLNQHLTV HSVKLVSTDT EDIVSAVTSE
BACU013555/1-799 ---------- ---------- ---------- ---------- ----------
ENSTTRP00000000586/1-1007 SLHTEERKYK CHLCPYAAKC RANLNQHLTV HSVKLVSTDT EDIVSAVTSE
901 950
bmy_03475T0/1-628 ---------- ---------- ---------- ---------- ----------
ENSBTAP00000016933/1-1083 GSDGKKHPYY YSCHVCGFET ELNVQFVSHM SLHVDKEQWM FSICCTACDF
ENSP00000368761/1-1077 GSDGKKHPYY YSCHVCGFET ELNVQFVSHM SLHVDKEQWM FSICCTACDF
BACU013555/1-799 ---------- ------SFEQ R--------- ---------- ----------
ENSTTRP00000000586/1-1007 GSDGEKHPYY YXCHVCGFET ELNVQFVSHM SLHVDKEQWM FSICCTACDF
951 1000
bmy_03475T0/1-628 ---------- ---------- ---------- ---------- ----------
ENSBTAP00000016933/1-1083 VTMEEAEIKA HIGTKHTGED RKTPSESNSP SSSSLSALSD SANSKDDSDS
ENSP00000368761/1-1077 VTMEEAEIKT HIGTKHTGED RKTPSESNSP SSSSLSALSD SANSKDDSDG
BACU013555/1-799 ---------- ---------- ---------- ---------- ----------
ENSTTRP00000000586/1-1007 VTMEETEIKA HIGTKHTGED RKTPSESNSP SSSSLSALSD SANSKDDSDS
1001 1050
bmy_03475T0/1-628 ---------- ---------- ---------- ---------- ----------
ENSBTAP00000016933/1-1083 SQKNKSGSNL LVISVMPGSQ PSLNSEEKPE KGFECVFCNF VCKTKNMFER
ENSP00000368761/1-1077 SQKNKGGNNL LVISVMPGSQ PSLNSEEKPE KGFECVFCNF VCKTKNMFER
BACU013555/1-799 ---------- ---------- ---------- ---------- ----------
ENSTTRP00000000586/1-1007 SQKNKSGNNL LVISVVPGSQ PSLNSEEKPE K--------- ----------
1051 1100
bmy_03475T0/1-628 ---------- ---------- ---------- ---------- -----
ENSBTAP00000016933/1-1083 HLQIHLITRM FECDVCHKFM KTPEQLLEHK KCHTVPTGGL NSGQW
ENSP00000368761/1-1077 HLQIHLITRM FECDVCHKFM KTPEQLLEHK KCHTVPTGGL K----
BACU013555/1-799 ---------- ---------- ---------- ---------- -----
ENSTTRP00000000586/1-1007 ---------- ---------- ---------- ---------- -----