KEY:
ENSP* - Homo sapiens (Human)
ENSBTA* - Bos taurus (Cow)
ENSTTR* - Tursiops truncatus (Dolphin)
bmy_* - Balaena mysticetus (Bowhead whale)
BACU* - Balaenoptera acutorostrata (Minke whale)
Copy from below the line for a valid .msf file.
----------------------------------------------------------------------------------
NoName MSF: 5 Type: P Thu May 15 17:00:04 2014 Check: 00 ..
Name: ENSP00000369948/1-424 Len: 426 Check: 3590 Weight: 1.00
Name: bmy_18196T0/1-369 Len: 426 Check: 8157 Weight: 1.00
Name: ENSTTRP00000009139/1-423 Len: 426 Check: 9858 Weight: 1.00
Name: ENSBTAP00000016935/1-424 Len: 426 Check: 625 Weight: 1.00
Name: BACU003588/1-424 Len: 426 Check: 373 Weight: 1.00
//
1 50
ENSP00000369948/1-424 MQGARAPRDQ GRSPGRMSAL GRSSVILLTY VLAATELTCL FMQFSIVPYL
bmy_18196T0/1-369 MREVRASRGQ GQSPSGIGTL DLSWVMLLVY VLAALELACL FMQFSIMPYL
ENSTTRP00000009139/1-423 MREVRASRG- GRSPSRTGTL DLSRVMLLVY VLAALELACL FMQFSVMPYL
ENSBTAP00000016935/1-424 MRKVGAPGGQ GQAPSGMGAL GRSGVVLLTY VLAALELTCL FMQFSIMPYL
BACU003588/1-424 MREVRASRGQ GQSPSGIGTL DLSWVMLLMY VLAALELACL FMQFSIMPYL
51 100
ENSP00000369948/1-424 SRKLGLDSIA FGYLQTTFGV LQLLGGPVFG RFADQRGARA ALTLSFLAAL
bmy_18196T0/1-369 SRRLGLDSVA FGYQQTIFGV LQLLGGPVFG RFADQRGARA AFTLSFLASS
ENSTTRP00000009139/1-423 SRRLGLDSVA FGYQQTIFGV LQLLGGPVFG RFADQRGARA AFTLSFLASS
ENSBTAP00000016935/1-424 SRRLGLDSVA FGYQQTVFGV LQLLGGPVFG RFADQHGARA AFTLSFLASS
BACU003588/1-424 SRRLGLDSVA FGYQQTIFGV LQLLGGPVFG RFADQRGARA AFTLSFLASS
101 150
ENSP00000369948/1-424 ALYLLLAAAS SPALPGVYLL FASRLPGALM HTLPAAQMVI TDLSAPEERP
bmy_18196T0/1-369 ALYLLLAAAC SPTLPGVALL FASRLPGALM HTLPAVQMVI TDLSAPEERP
ENSTTRP00000009139/1-423 ALYLLLAAAC SPALPGVPLL FASRLPGALM HTLPXXXXXX XXXXXXXXXX
ENSBTAP00000016935/1-424 ALYLLLAAAC IPALPGVALL FASRLPGALM HTLPAAQMVI ADLSTPEERP
BACU003588/1-424 ALYLLLAAAC SPALPGVALL FASRLPGALM HTLPAAQMVI TDLSAPEERP
151 200
ENSP00000369948/1-424 AALGRLGLCF GVGVILGSLL GGTLVSAYGI QCPAILAALA TLLGAVLSFT
bmy_18196T0/1-369 AALGRLGLCF GVGVIFGSLL GGTLSSTCGI QCPVIVALVV NLLGAILSFT
ENSTTRP00000009139/1-423 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXI QCPVIVAFVV SLLGAVLSLT
ENSBTAP00000016935/1-424 AALGRLGLCF GVGLIFGSLL GGTLSSSCGI QCPVIVAFVV TLLGALLSVT
BACU003588/1-424 AALSRLGLCF GVGVIFGSLL GGTLSSTCGI QCPVIVALVV NLLGAILSFT
201 250
ENSP00000369948/1-424 CIPASTKGAK TDAQAPLPGG PRASVFDLKA IASLLRLPDV PRIFLVKVAS
bmy_18196T0/1-369 CIPTSTKGAS AHAQAALPGK ---------- ---------- ----------
ENSTTRP00000009139/1-423 CIPTSTKGAS ARAQAALPGK PKASVFDLKA ITCLLLQPGV LPVFLVKVIC
ENSBTAP00000016935/1-424 CIPASTKGAS AHAQTTLPGR PKASVFDLKA ITRLLLQPGV LPVFLVKVIC
BACU003588/1-424 CIPTSTKGAS ARAQASLPGK PKASLLDLKA ITCLLLQPGV LPVFLVKVIC
251 300
ENSP00000369948/1-424 NCPTGLFMVM FSIISMDFFQ LEAAQAGYLM SFFGLLQMVT QGLVIGQLSS
bmy_18196T0/1-369 ---------L HQTHPSRYTQ SRPHQ----- --------VF QGLVIGWLSS
ENSTTRP00000009139/1-423 GFPSGLFMVM FSLISMDFFQ LEAAQAGYLM SFFGVLQMVF QGLVIGWLSS
ENSBTAP00000016935/1-424 GLPIGLFMVM FSIISMDFFQ LEAAQAGYLM SFFGVLQMVI QGLVIGRLSS
BACU003588/1-424 GFPSGLFMVM FSLISMDFFQ LEAAQAGYLM SFFGLLQMVF QGLVIGWLSG
301 350
ENSP00000369948/1-424 HFSEEVLLRA SVLVFIVVGL AMAWMSSVFH FCLLVPGLVF SLCTLNVVTD
bmy_18196T0/1-369 HFSEGALLRA SVLLFSVVGL AMALMANVFH FCLLMPGLVF SLCALNVVTD
ENSTTRP00000009139/1-423 RFSEGALLRA SVLAFSVVGL AMALMANVFH LCLLMPGLVF SLCALNVVTD
ENSBTAP00000016935/1-424 HFSEGDLLRA SVLVFSVVGL AMALMANVFH FCLLMPGLVF SMCALNVVTD
BACU003588/1-424 HFSEGALLRA SVLVFSVVGL AMALMANVFH FCLLMPGLVF SLCALNVVTD
351 400
ENSP00000369948/1-424 SMLIKAVSTS DTGT-MLGLC ASVQPLLRTL GPTVGGLLYR SFGVPVFGHV
bmy_18196T0/1-369 SMLTKAVSAS DTDCDVTELS EEVHMEEQKR HITTAEDRTR AFRLHVADRG
ENSTTRP00000009139/1-423 SMLTNAVSAS DTGT-MLGLC ASVQPLTRTL GPTLGGLLYH RFGVPVFGHV
ENSBTAP00000016935/1-424 SMLTKAVSTS DTGT-MLGLC ASVQPLMRTL GPTLGGLLYR GFGVPVFGHV
BACU003588/1-424 SMLTKAVSAS DTGT-MLGLC ASVQPLTRTL GPTLGGLLYH SFGVPVFGHV
401 450
ENSP00000369948/1-424 QVAINTLVLL VLWRKPMPQR KDKVR-
bmy_18196T0/1-369 ALLRHLA--- --HSQPTQQT EGFTKA
ENSTTRP00000009139/1-423 QLAVNFLVLL VLWRQPVPPK MDKAW-
ENSBTAP00000016935/1-424 QFAVNFIVFL VLWRQPVPRK MGKAQ-
BACU003588/1-424 QFVVNFLVLL VLWRQPMPPK MDKAW-