KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 17:00:04 2014 Check: 00 .. Name: ENSP00000369948/1-424 Len: 426 Check: 3590 Weight: 1.00 Name: bmy_18196T0/1-369 Len: 426 Check: 8157 Weight: 1.00 Name: ENSTTRP00000009139/1-423 Len: 426 Check: 9858 Weight: 1.00 Name: ENSBTAP00000016935/1-424 Len: 426 Check: 625 Weight: 1.00 Name: BACU003588/1-424 Len: 426 Check: 373 Weight: 1.00 // 1 50 ENSP00000369948/1-424 MQGARAPRDQ GRSPGRMSAL GRSSVILLTY VLAATELTCL FMQFSIVPYL bmy_18196T0/1-369 MREVRASRGQ GQSPSGIGTL DLSWVMLLVY VLAALELACL FMQFSIMPYL ENSTTRP00000009139/1-423 MREVRASRG- GRSPSRTGTL DLSRVMLLVY VLAALELACL FMQFSVMPYL ENSBTAP00000016935/1-424 MRKVGAPGGQ GQAPSGMGAL GRSGVVLLTY VLAALELTCL FMQFSIMPYL BACU003588/1-424 MREVRASRGQ GQSPSGIGTL DLSWVMLLMY VLAALELACL FMQFSIMPYL 51 100 ENSP00000369948/1-424 SRKLGLDSIA FGYLQTTFGV LQLLGGPVFG RFADQRGARA ALTLSFLAAL bmy_18196T0/1-369 SRRLGLDSVA FGYQQTIFGV LQLLGGPVFG RFADQRGARA AFTLSFLASS ENSTTRP00000009139/1-423 SRRLGLDSVA FGYQQTIFGV LQLLGGPVFG RFADQRGARA AFTLSFLASS ENSBTAP00000016935/1-424 SRRLGLDSVA FGYQQTVFGV LQLLGGPVFG RFADQHGARA AFTLSFLASS BACU003588/1-424 SRRLGLDSVA FGYQQTIFGV LQLLGGPVFG RFADQRGARA AFTLSFLASS 101 150 ENSP00000369948/1-424 ALYLLLAAAS SPALPGVYLL FASRLPGALM HTLPAAQMVI TDLSAPEERP bmy_18196T0/1-369 ALYLLLAAAC SPTLPGVALL FASRLPGALM HTLPAVQMVI TDLSAPEERP ENSTTRP00000009139/1-423 ALYLLLAAAC SPALPGVPLL FASRLPGALM HTLPXXXXXX XXXXXXXXXX ENSBTAP00000016935/1-424 ALYLLLAAAC IPALPGVALL FASRLPGALM HTLPAAQMVI ADLSTPEERP BACU003588/1-424 ALYLLLAAAC SPALPGVALL FASRLPGALM HTLPAAQMVI TDLSAPEERP 151 200 ENSP00000369948/1-424 AALGRLGLCF GVGVILGSLL GGTLVSAYGI QCPAILAALA TLLGAVLSFT bmy_18196T0/1-369 AALGRLGLCF GVGVIFGSLL GGTLSSTCGI QCPVIVALVV NLLGAILSFT ENSTTRP00000009139/1-423 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXI QCPVIVAFVV SLLGAVLSLT ENSBTAP00000016935/1-424 AALGRLGLCF GVGLIFGSLL GGTLSSSCGI QCPVIVAFVV TLLGALLSVT BACU003588/1-424 AALSRLGLCF GVGVIFGSLL GGTLSSTCGI QCPVIVALVV NLLGAILSFT 201 250 ENSP00000369948/1-424 CIPASTKGAK TDAQAPLPGG PRASVFDLKA IASLLRLPDV PRIFLVKVAS bmy_18196T0/1-369 CIPTSTKGAS AHAQAALPGK ---------- ---------- ---------- ENSTTRP00000009139/1-423 CIPTSTKGAS ARAQAALPGK PKASVFDLKA ITCLLLQPGV LPVFLVKVIC ENSBTAP00000016935/1-424 CIPASTKGAS AHAQTTLPGR PKASVFDLKA ITRLLLQPGV LPVFLVKVIC BACU003588/1-424 CIPTSTKGAS ARAQASLPGK PKASLLDLKA ITCLLLQPGV LPVFLVKVIC 251 300 ENSP00000369948/1-424 NCPTGLFMVM FSIISMDFFQ LEAAQAGYLM SFFGLLQMVT QGLVIGQLSS bmy_18196T0/1-369 ---------L HQTHPSRYTQ SRPHQ----- --------VF QGLVIGWLSS ENSTTRP00000009139/1-423 GFPSGLFMVM FSLISMDFFQ LEAAQAGYLM SFFGVLQMVF QGLVIGWLSS ENSBTAP00000016935/1-424 GLPIGLFMVM FSIISMDFFQ LEAAQAGYLM SFFGVLQMVI QGLVIGRLSS BACU003588/1-424 GFPSGLFMVM FSLISMDFFQ LEAAQAGYLM SFFGLLQMVF QGLVIGWLSG 301 350 ENSP00000369948/1-424 HFSEEVLLRA SVLVFIVVGL AMAWMSSVFH FCLLVPGLVF SLCTLNVVTD bmy_18196T0/1-369 HFSEGALLRA SVLLFSVVGL AMALMANVFH FCLLMPGLVF SLCALNVVTD ENSTTRP00000009139/1-423 RFSEGALLRA SVLAFSVVGL AMALMANVFH LCLLMPGLVF SLCALNVVTD ENSBTAP00000016935/1-424 HFSEGDLLRA SVLVFSVVGL AMALMANVFH FCLLMPGLVF SMCALNVVTD BACU003588/1-424 HFSEGALLRA SVLVFSVVGL AMALMANVFH FCLLMPGLVF SLCALNVVTD 351 400 ENSP00000369948/1-424 SMLIKAVSTS DTGT-MLGLC ASVQPLLRTL GPTVGGLLYR SFGVPVFGHV bmy_18196T0/1-369 SMLTKAVSAS DTDCDVTELS EEVHMEEQKR HITTAEDRTR AFRLHVADRG ENSTTRP00000009139/1-423 SMLTNAVSAS DTGT-MLGLC ASVQPLTRTL GPTLGGLLYH RFGVPVFGHV ENSBTAP00000016935/1-424 SMLTKAVSTS DTGT-MLGLC ASVQPLMRTL GPTLGGLLYR GFGVPVFGHV BACU003588/1-424 SMLTKAVSAS DTGT-MLGLC ASVQPLTRTL GPTLGGLLYH SFGVPVFGHV 401 450 ENSP00000369948/1-424 QVAINTLVLL VLWRKPMPQR KDKVR- bmy_18196T0/1-369 ALLRHLA--- --HSQPTQQT EGFTKA ENSTTRP00000009139/1-423 QLAVNFLVLL VLWRQPVPPK MDKAW- ENSBTAP00000016935/1-424 QFAVNFIVFL VLWRQPVPRK MGKAQ- BACU003588/1-424 QFVVNFLVLL VLWRQPMPPK MDKAW-