KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 17:00:07 2014 Check: 00 .. Name: BACU010564/1-716 Len: 880 Check: 5444 Weight: 1.00 Name: ENSTTRP00000000784/1-873 Len: 880 Check: 8663 Weight: 1.00 Name: ENSP00000428646/1-875 Len: 880 Check: 9122 Weight: 1.00 Name: bmy_16176T0/1-871 Len: 880 Check: 3073 Weight: 1.00 Name: ENSBTAP00000016959/1-863 Len: 880 Check: 5572 Weight: 1.00 // 1 50 BACU010564/1-716 ------MFMS PH-------- ---------- ---------- ---------- ENSTTRP00000000784/1-873 MASLDLPYRC PRCGEHKRFR SLSSLRAHLE YSHTYETLYI LSKTNSICDG ENSP00000428646/1-875 MASLDLPYRC PRCGEHKRFR SLSSLRAHLE YSHTYETLYI LSKTNSICDG bmy_16176T0/1-871 MASLDLPYRC PRCGEHKRFR SLSSLRAHLE YSHTYETLYI LSKTNSICDG ENSBTAP00000016959/1-863 MASLDLPYRC PRCGEHKRFR SLSSLRAHLE YSHTYETLYI LSKTNSICDG 51 100 BACU010564/1-716 ---------- -------IPV PP-PVTVPTV ------VW-- ---------- ENSTTRP00000000784/1-873 AAAAAAAAAA AAAAASGFPL APEPAALLAV PGARREVFES TSF-GKEQAA ENSP00000428646/1-875 ----AAAAAA AAAAASGFPL APEPAALLAV PGARREVFES TSFQGKEQAA bmy_16176T0/1-871 ----AAAAAA AAAAASGFPL APEPAALLAV PGARREVFES TSFQGKEQAA ENSBTAP00000016959/1-863 ----AAAA-- -------FPL APEPAALLAV PGARREVFES TSFQGKEQAV 101 150 BACU010564/1-716 ---MCAPHRI ALHEPKN--- --EGELRTEK AVSELPRSRG L--------- ENSTTRP00000000784/1-873 GPSPATPHLL HHHHHHAPLA HFPGDLVPAS LPCEELAEPG LVPAAAAARY ENSP00000428646/1-875 GPSPAAPHLL HHHHHHAPLA HFPGDLVPAS LPCEELAEPG LVP-AAAARY bmy_16176T0/1-871 GPSSAAPHLL HHHHHHAPLA HFPGDLVPAS LPCEELAEPG LVP-AAAARY ENSBTAP00000016959/1-863 GQSSAAPHLL HHHHHHAPLA HFPGDLVPAG LPCEELAEPG LVP---AARY 151 200 BACU010564/1-716 ---DTVTPVG ---LHQAIVT T--------- -----LGATD VGPQT----- ENSTTRP00000000784/1-873 ALREIEIPLG ELFARKSVAS SACSTPPPGP G----PGPAS ASPASPSPAD ENSP00000428646/1-875 ALREIEIPLG ELFARKSVAS SACSTPPPGP GPGPCPGPAS ASPASPSPAD bmy_16176T0/1-871 ALREIEIPLG ELFARKSVAS SACSTPPPGP G----PGPAS ASPASPSPAD ENSBTAP00000016959/1-863 ALREIEIPLG ELFARKSVAS SACSTPPPGP GPGPCPGPAS ASPASPSPAD 201 250 BACU010564/1-716 ---------- QIRALEKLEV DRRLERLSEE VEQKIAGQVG RLQAELERKA ENSTTRP00000000784/1-873 VAYEEGLARL KIRALEKLEV DRRLERLSEE VEQKIAGQVG RLQAELERKA ENSP00000428646/1-875 VAYEEGLARL KIRALEKLEV DRRLERLSEE VEQKIAGQVG RLQAELERKA bmy_16176T0/1-871 VAYEEGLARL KIRALEKLEV DRRLERLSEE VEQKIAGQVG RLQAELERKA ENSBTAP00000016959/1-863 VAYEEGLARL KIRALEKLEV DRRLERLSEE VEQKIAGQVG RLQAELERKA 251 300 BACU010564/1-716 AELETARQES ARLGREKEEL EERASELSRQ VDVSVELLAS LKQDLVHKEQ ENSTTRP00000000784/1-873 AELETARQES ARLGREKEEL EERASELSRQ VDVSVELLAS LKQDLVHKEQ ENSP00000428646/1-875 AELETARQES ARLGREKEEL EERASELSRQ VDVSVELLAS LKQDLVHKEQ bmy_16176T0/1-871 AELETARQES ARLGREKEEL EERASELSRQ VDVSVELLAS LKQDLVHKEQ ENSBTAP00000016959/1-863 AELETARQES ARLGREKEEL EERASELSRQ VDVSVELLAS LKQDLVHKEQ 301 350 BACU010564/1-716 ELSRKQQEVV QIDQFLKETA AREASAKLRL QQFIEELLER ADRAERQLQV ENSTTRP00000000784/1-873 ELSRKQQEVV QIDQFLKETA AREASAKLRL QQFIEELLER ADRAERQLQV ENSP00000428646/1-875 ELSRKQQEVV QIDQFLKETA AREASAKLRL QQFIEELLER ADRAERQLQV bmy_16176T0/1-871 ELSRKQQEVV QIDQFLKETA AREASAKLRL QQFIEELLER ADRAERQLQV ENSBTAP00000016959/1-863 ELSRKQQEVV QIDQFLKETA AREASAKLRL QQFIEELLER ADRAERQLQV 351 400 BACU010564/1-716 ISSSCGSTPS ASLGRGGGGS GAGPSTRGPG RTREHHAGLA MPSTYAVSRH ENSTTRP00000000784/1-873 ISSSCGSTPS ASLGRGGGGS GAGPSTRGPG RTREHHAGLA MPSTYAVSRH ENSP00000428646/1-875 ISSSCGSTPS ASLGRGGGGG GAGPNARGPG RMREHHVGPA VPNTYAVSRH bmy_16176T0/1-871 ISSSCGSTPS ASLGRGGGGS GAGPSTRGPG RTREHHAGLA MPSTYAVSRH ENSBTAP00000016959/1-863 ISSSCGSTPS ASLGRGGGGA GAGPSTRAPG RMREHHAGPA MPSTYAVSRH 401 450 BACU010564/1-716 GSSPSTGACS RIPAASQSSG CYDSDSLELP RPEEGAPEDS GPGGLGTRVQ ENSTTRP00000000784/1-873 GSSPSTGACS RIPAASQSSG CYDSDSLELP RPEEGAPEDS GPGGLGTRVQ ENSP00000428646/1-875 GSSPSTGASS RVPAASQSSG CYDSDSLELP RPEEGAPEDS GPGGLGTRAQ bmy_16176T0/1-871 GSSPSTGACS RIPAASQSSG CYDSDSLELP RPEEGAPEDS GPGGLGTRVQ ENSBTAP00000016959/1-863 GSSPSTGASS RIPAASQSSG CYDSDSLELP RPEEGAPEDS GPGGLGTRVQ 451 500 BACU010564/1-716 AANGGLERAQ PPRSSGLRRQ AIQNWQRRPR RHSTEGEEGD VSDVGSRTTE ENSTTRP00000000784/1-873 AANGGLERAQ PPRSSGLRRQ AIQNWQRRPR QHSTEGEEGD VSDVGSRTTE ENSP00000428646/1-875 AANGGSERSQ PPRSSGLRRQ AIQNWQRRPR RHSTEGEEGD VSDVGSRTTE bmy_16176T0/1-871 AANGGLERAQ PPRSSGLRRQ AIQNWQRRPR RHSTEGEEGD VSDVGSRTTE ENSBTAP00000016959/1-863 AANGGSERAQ PPRSSGLRRQ AIQNWQRRPR RHSTEGEEGD VSDVGSRTTE 501 550 BACU010564/1-716 SEAEGPSDAP RPGPAMAGPL SSCRLSARPE GGSGRGRRAE RGSPSRSNEV ENSTTRP00000000784/1-873 SEAEGPSDAP RPGPAMAGPL SSCRLSARPE GGSGRGRRAE RGSPSRSNEV ENSP00000428646/1-875 SEAEGPLDAP RPGPAMAGPL SSCRLSARPE GGSGRGRRAE RVSPSRSNEV bmy_16176T0/1-871 SEAEGPSDAP RPGPAMAGPL SSCRLSARPE GGSGRGRRAE RGSPSRSNEV ENSBTAP00000016959/1-863 SEAEGPSEVP RPGPAMAGPV SSCRLSARPE GGSGRGRRAE RGSPSRSNEV 551 600 BACU010564/1-716 ISPEILKMRA ALFCIFTYLD TRTLLHAAEV CRDWRFVARH PAVWTRVLLE ENSTTRP00000000784/1-873 ISPEILKMRA ALFCIFTYLD TRTLLHAAEV CRDWRFVARH PAVWTRVL-- ENSP00000428646/1-875 ISPEILKMRA ALFCIFTYLD TRTLLHAAEV CRDWRFVARH PAVWTRVLLE bmy_16176T0/1-871 ISPEILKMRA ALFCIFTYLD TRTLLHAAEV CRDWRFVARH PAVWTRVLLE ENSBTAP00000016959/1-863 ISPEILKMRA ALFCIFTYLD TRTLLHAAEV CRDWRFVARH PAVWTRVLLE 601 650 BACU010564/1-716 NARVCSKFLA MLAQWCTQAH SLTLQNLKPR QRGKKESKEE YARSTRGCLE ENSTTRP00000000784/1-873 DARVXXXXXX XXXXXXXXXX XXXXXXXXXX XXXKKESKEE YARSTRGCLE ENSP00000428646/1-875 NARVCSKFLA MLAQWCTQAH SLTLQNLKPR QRGKKESKEE YARSTRGCLE bmy_16176T0/1-871 NARVCSKFLA MLAQWCTQAH SLTLQNLKPR QRGKKESKEE YARSTRGCLE ENSBTAP00000016959/1-863 NARVCSKFLA MLAQWCTQAH SLTLQNLKPR QRGKKESKEE YARSTRGCLE 651 700 BACU010564/1-716 AGLESLLKAA GGNLLILRIS HCPNILTDRS LWLASCYCRA LQAVTY---- ENSTTRP00000000784/1-873 AGLESLLKAA GGNLLILRIS HCPNVLTDRS LWLASCYCRA LQAVTYRSAT ENSP00000428646/1-875 AGLESLLKAA GGNLLILRIS HCPNILTDRS LWLASCYCRA LQAVTYRSAT bmy_16176T0/1-871 AGLESLLKAA GGNLLILRIS HCPNILTDRS LWLASCYCRA LQAVTYRSAT ENSBTAP00000016959/1-863 AGLESLLKAA GGNLLILRIS HCPNILTDRS LWLASCYCRA LQAVTYRSAT 701 750 BACU010564/1-716 ---------- ---------- --------SQ QPTRFSNRCL QMIGRCWPHL ENSTTRP00000000784/1-873 DPVGHEVIWA LGAGCREIVS LQVAPLHPCQ QPTRFSNRCL QMIGRCWPHL ENSP00000428646/1-875 DPVGHEVIWA LGAGCREIVS LQVAPLHPCQ QPTRFSNRCL QMIGRCWPHL bmy_16176T0/1-871 DPVGHEVIWA LGAGCREIVS LQVAPLHPCQ QPTRFSNRCL QMIGRCWPHL ENSBTAP00000016959/1-863 DPVGHEVIWA LGAGCREIVS LQVAPLHPCQ QPMRFSNRCL QMIGRCWPHL 751 800 BACU010564/1-716 RALGVGGAGC GVQGLASLAR NCMRLQVLEL DHVSEITQEV AAEVCREGLK ENSTTRP00000000784/1-873 RALGVGGAGC GVQGLASLAR NCMRLQVLEL DHVSEITQEV AAEVCREGLK ENSP00000428646/1-875 RALGVGGAGC GVQGLASLAR NCMRLQVLEL DHVSEITQEV AAEVCREGLK bmy_16176T0/1-871 RALGVGGAGC GVQGLASLAR NCMRLQVLEL DHVSEITQEV AAEVCREGLK ENSBTAP00000016959/1-863 RALGVGGAGC GVQGLASLAR NCMRLQVLEL DHVSEITQEV AAEVCREGLK 801 850 BACU010564/1-716 GLEMLVLTAT PVTPKALLHF NSICRNLKSI VVQVGIADYF KEPSSPEAQK ENSTTRP00000000784/1-873 GLEMLVLTAT PVTPKALLHF NSICRNLKSI VVQIGIADYF KEPSSPEAQK ENSP00000428646/1-875 GLEMLVLTAT PVTPKALLHF NSICRNLKSI VVQIGIADYF KEPSSPEAQK bmy_16176T0/1-871 GLEMLVLTAT PVTPKALLHF NSICRNLKSI VVQVGIADYF KEPSSPEAQK ENSBTAP00000016959/1-863 GLEMLVLTAT PVTPKALLHF NSICRNLKSI VVQIGIADYF KEPSSPEAQK 851 900 BACU010564/1-716 LFEDMVTKLQ ALRRRPGFSK ILHIKVEGGC ENSTTRP00000000784/1-873 LFEDMVTKLQ ALRRRPGFSK ILHIKVEGGC ENSP00000428646/1-875 LFEDMVTKLQ ALRRRPGFSK ILHIKVEGGC bmy_16176T0/1-871 LFEDMVTKLQ ALRRRPGFSK ILHIKVEGGC ENSBTAP00000016959/1-863 LFEDMVTKLQ ALRRRPGFSK ILHIKVE-GC