KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 17:00:11 2014 Check: 00 .. Name: ENSP00000341957/1-1134 Len: 1173 Check: 6779 Weight: 1.00 Name: ENSBTAP00000016985/1-1134 Len: 1173 Check: 1029 Weight: 1.00 Name: ENSTTRP00000012995/1-1125 Len: 1173 Check: 8404 Weight: 1.00 Name: bmy_13238T0/1-1173 Len: 1173 Check: 3770 Weight: 1.00 Name: BACU001677/1-1127 Len: 1173 Check: 6306 Weight: 1.00 // 1 50 ENSP00000341957/1-1134 MRFGSKMMPM FLTVYLSNNE QHFTEVPVTP ETICRDVVDL CKEPGESDCH ENSBTAP00000016985/1-1134 LCF-SFCFQM FLTVYLSNNE QHFTEVPVTP ETICRDVVDL CKEPGESDCH ENSTTRP00000012995/1-1125 -TSGERNPRM FLTVYLSNNE QHFTEVPVTP ETICRDVVDL CKEPGESDCH bmy_13238T0/1-1173 MRFGSKMMPM FLTVYLSSNE QHFTEVPVTP ETVCRDVVDL CKEPGESDCH BACU001677/1-1127 ---------M FLTVYLSNNE QHFTEVPVTP ETVCRDVVDL CKEPGESDCH 51 100 ENSP00000341957/1-1134 LAEVWCGS-- ---------- ---------- ---------- -----ERPVA ENSBTAP00000016985/1-1134 LAEVWCGS-- ---------- ---------- ---------- -----ERPVA ENSTTRP00000012995/1-1125 LAEVWCGS-- ---------- ---------- ---------- -----ERPVA bmy_13238T0/1-1173 LAEVWXGSGM PALVVPSFII IGFRRGXVCR TRVSVEKLQD RVPIRERPVA BACU001677/1-1127 LAEVWCGS-- ---------- ---------- ---------- -----ERPVA 101 150 ENSP00000341957/1-1134 DNERMFDVLQ RFGSQRNEVR FFLRHERPPG RDIVSGPRSQ DPSLKRNGVK ENSBTAP00000016985/1-1134 DNERMFDVLQ RFGSQRSEVR FFLRHERPPG RDVVSGPRSQ DPSLKRNGVK ENSTTRP00000012995/1-1125 DNERMFDVLQ RFGSQRSEVR FFLRHERPPG RDIVSGPRSQ DPSLKRNGVK bmy_13238T0/1-1173 DSERMFDVLQ RFGSQRSEVR FFLRHERPPG RDVVSGPRSQ DPSLKRNGVK BACU001677/1-1127 DSERMFDVLQ RFGSQRSEVR FFLRHERPPG RDVVSGPRSQ DPSLKRNGVK 151 200 ENSP00000341957/1-1134 VPGEYRRKEN GVNSPRMDLT LAELQEMASR QQQQIEAQQQ LLATKEQRLK ENSBTAP00000016985/1-1134 VPGEHRRKEN GVNSPRMDLT LAELQEMASR QQQQIEAQQQ MLATKEQRLK ENSTTRP00000012995/1-1125 VPGEHRRKEN GVNSPRMDLT LAELQEMASR QQQQIEAQQQ -----EQRLK bmy_13238T0/1-1173 VPGEHRRKEN GVNSPRMDLT LAELQEMASR QQQQIEAQQQ MLATKEQRLK BACU001677/1-1127 VPGEHRRKEN GVNSPRMDLT LAELQEMASR QQQQIEAQQQ MLATKEQRLK 201 250 ENSP00000341957/1-1134 FLKQQDQRQQ QQVAEQEKLK RLKEIAENQE AKLKKVRALK GHVEQKRLSN ENSBTAP00000016985/1-1134 FLKQQDQRQQ QQAAEQEKLK RLKEIAENQE AKLKKVRALK GHVEQKRLSN ENSTTRP00000012995/1-1125 FLKQQDQRQQ QQAAEQEKLK RLKEIAENQE AKLKKVRALK GHVEQKRLSN bmy_13238T0/1-1173 FLKQQDQRQQ QQAAEQEKLK RLKEIAENQE AKLKKVRALK GHVEQKRLSN BACU001677/1-1127 FLKQQDQRQE QQAAEQEKLK RLKEIAENQE AKLKKVRALK GHVEQKRLSN 251 300 ENSP00000341957/1-1134 GKLVEEIEQM NNLFQQKQRE LVLAVSKVEE LTRQLEMLKN GRIDSHHDNQ ENSBTAP00000016985/1-1134 GKLVEEIEQM NSLFQQKQRE LVLAVSKVEE LTRQLEMLKN GRIDGHHDNQ ENSTTRP00000012995/1-1125 GKLVEEIEQM NSLFQQKQRE LVLAVSKVEE LTRQLEMLKN GRIDGHHDNQ bmy_13238T0/1-1173 GKLVEEIEQM NSLFQQKQRE LVLAVSKVEE LTRQLEMLKN GRIDGHHDNQ BACU001677/1-1127 GKLVEEIEQM NSLFQQKQRE LVLAVSKVEE LTRQLEMLKN GRIDGHHDNQ 301 350 ENSP00000341957/1-1134 SAVAELDRLY KELQLRNKLN QEQNAKLQQQ RECLNKRNSE VAVMDKRVNE ENSBTAP00000016985/1-1134 SAVAELDRLY KELQLRNKLN QEQNAKLQQQ RECLNKRNSE VAVMDKRVNE ENSTTRP00000012995/1-1125 SAVAELDRLY KELQLRNKLN QEQNAKLQQQ RECLNKRNSE VAVMDKRVNE bmy_13238T0/1-1173 SAVAELDRLY KELQLRNKLN QEQNAKLQQQ RECLNKRNSE VAVMDKRVNE BACU001677/1-1127 SAVAELDRLY KELQLRNKLN QEQNAKLQQQ RECLNKRNSE VAVMDKRVNE 351 400 ENSP00000341957/1-1134 LRDRLWKKKA ALQQKENLPV SSDGNLPQQA ASAPSRVAAV GPYIQSSTMP ENSBTAP00000016985/1-1134 LRDRLWKKKA ALQQKENLPV SSDGHVPQPG ASGQSRVAAV GPYIQSSTMP ENSTTRP00000012995/1-1125 LRDRLWKKKA ALQQKENLPV SSDGHLPQPG ASGPSRVAAV GPYIQSSTMP bmy_13238T0/1-1173 LRDRLWKKKA ALQQKENLPV SSDGHLPQPG ASGPSRVAAV GPYIQSSTMP BACU001677/1-1127 LRDRLWKKKA ALQQKENLPV SSDGHLPQPG ASGPSRVAAV GPYIQSSTMP 401 450 ENSP00000341957/1-1134 RMPSRPELLV KPALPDGSLV IQASEGPMKI QTLPNMRSGA ASQTKGSKIH ENSBTAP00000016985/1-1134 RIPSRPELLV KPALPDGPGA TQASEGPMKV QTLPNMRSGA ASQAKGSKIH ENSTTRP00000012995/1-1125 RIASRPELLV KPALPDGPGA THASEGSMKV QTLLNMRSGA ASQVKGSKIH bmy_13238T0/1-1173 RIPSRPELLV KPALPDGPGA TQASEGSMKV QTLPNMRSGA ASQVKGSKIH BACU001677/1-1127 RIASRPELLV KPALPDGPGA TQASEGSMKV QTLPNMRSGA ASQLKGSKIH 451 500 ENSP00000341957/1-1134 PVGPDWSPSN ADLFPS-QGS ASVPQSTGNA LDQVDDGEVP LREKEKKVRP ENSBTAP00000016985/1-1134 LLGPDWTPPN ADLFSS-QAS ASVSKSSGNV PDQVDDGEVP LREKEKKVRP ENSTTRP00000012995/1-1125 LLGPDWTPPN ADLFSSQQAS ASVSKSSGNA PDQADDGEVP LREKEKKVRP bmy_13238T0/1-1173 LXGPDWTSPN ADLFSSQQAS ASVSKSSGNA PDQADDGEVP LREKEKKVRP BACU001677/1-1127 LLGPDWTPPN ADLFSSQQAS ASVSKSSGNA PDQADDGEVP LREKEKKVRP 501 550 ENSP00000341957/1-1134 FSMFDAVDQS NAPPSFGTLR KNQSSEDILR DAQVANKNVA KVPPPVPTKP ENSBTAP00000016985/1-1134 FSMFDTVDQS AAPPAFGTLR KNQSSEDILR DAQAANKNVA KVPPPVPSKP ENSTTRP00000012995/1-1125 FSMFDTVDQS AAPPAFGTLR KNQSSEDILR DAQAANKNVS NVPPPVPSKP bmy_13238T0/1-1173 FSMFDTVDQS AAPPAFGTLR KNQSSEDILR DAQAANKNVA KVPPPVPSKP BACU001677/1-1127 FSMFDTVDQS AAPPAFGTLR KNQSSEDILR DAQAANKNVA KVPPPVPSKP 551 600 ENSP00000341957/1-1134 KQINLPYFGQ TNQPPSDIKP DGSSQQLSTV VPSMGTKPKP AGQQPRVLLS ENSBTAP00000016985/1-1134 KQINLPYFGQ TNQSPSDMKP DGTAPQLSAA VASMGGKPKP TVQQQRGLLA ENSTTRP00000012995/1-1125 KQINLPYFGQ TNQSP-DVKP DGNPQQ-SAA VASMGNKPKP AGQQQR-LLA bmy_13238T0/1-1173 KQINLPYFGQ TNQSPSDIKP DGNPQQLSAA VASMGNKPKP AGQQQRVLLA BACU001677/1-1127 KQINLPYFGQ TNQSPSDIKP DGNPQQSSAA VASMGNKPKP AGQQQRVLLA 601 650 ENSP00000341957/1-1134 PSIPSVGQ-D QTLSPGSKQE SPPAAAVRPF TPQPSKDTLL PPFRKPQTVA ENSBTAP00000016985/1-1134 PGGPSVGPAD QTLPPGSKQE SPPAAAVRPF TPQPSKDALL PPFRKPQTVA ENSTTRP00000012995/1-1125 VSMPSVGQAD QT-PTGSKQE S-PAAAVRPF TPQPSKDTLL PPFRKPQTVA bmy_13238T0/1-1173 ASIPSGGQAD QTLPPGSKQE SPPAAAVRPF TPQPSKDTLL PPFRKPQTVA BACU001677/1-1127 ASVPSGGQAD QTLPPGSKQE SPPAAAVRPF TPQPSKDTLL PPFRKPQTVA 651 700 ENSP00000341957/1-1134 ASSIYSMYTQ QQAPGKNFQQ AVQSALTKTH TRGPHFSSVY GKPVIAAAQN ENSBTAP00000016985/1-1134 ASSIYSMYTQ HQAPGKNFQQ AVQSALTKPH PRAPHFPSVY GKPVIAAAQN ENSTTRP00000012995/1-1125 ASSIYSMYTQ HQAPGKNFQQ AVQSALTKSH SRGPHFPSVY GKPVIATAQN bmy_13238T0/1-1173 ASSIYSMYTQ HQAPGKNFQQ AVQSALTKSH SRGPHFPSVY GKPVIATAQN BACU001677/1-1127 ASSIYSMYTQ HQVPGKNFQQ AVQSALTKSH SRGPHFPSVY GKPVIATAQN 701 750 ENSP00000341957/1-1134 QQQHPENIYS NSQGKPGSPE PETEPVSSVQ ENHENERIPR PLSPTKLLPF ENSBTAP00000016985/1-1134 QQQLPENVYS NNQGKSGSPE PETEPVSSVQ ETHENERIPR PLSPTKLLPF ENSTTRP00000012995/1-1125 PQQLPENIYS NTQGKPGSPE PETEPISSVQ ETHENERIPR PLSPTKLLPF bmy_13238T0/1-1173 PQQLPENIYS NTQGKPGSPE PETEPISSVQ ETHENERIPR PLSPTKLLPF BACU001677/1-1127 PQQLPENIYS NTQGKPGSPE PETEPTSSVQ ETHENERIPR PLSPTKLLPF 751 800 ENSP00000341957/1-1134 LSNPYRNQSD ADLEALRKKL SNAPRPLKKR SSITEPEGPN GPNIQKLLYQ ENSBTAP00000016985/1-1134 LSNPYRNQSD ADLEALRKKL SNAPRPLKKR SSITEPEGPN GPNIQKLLYQ ENSTTRP00000012995/1-1125 LSNPYRNQSD ADLEALRKKL SNAPRPLKKR SSITEPEGPN GPNIQKLLYQ bmy_13238T0/1-1173 LSNPYRNQSD ADLEALRKKL SNAPRPLKKR SSITEPEGPN GPNIQKLLYQ BACU001677/1-1127 LSNPYRNQSD ADLEALRKKL SNAPRPLKKR SSITEPEGPN GPNIQKLLYQ 801 850 ENSP00000341957/1-1134 RTTIAAMETI SVPSYPSKSA SVTASSESPV EIQNPYLHVE PEKEVVSLVP ENSBTAP00000016985/1-1134 RTTIAAMETI SVPAYPSKSA SGTASPESPL EIQNPYLPVE PEKEVVPLVP ENSTTRP00000012995/1-1125 RTTIAAMETI SVPAHASKST SGTASPESPL ETQSPYLHVE PEKEVLPLAP bmy_13238T0/1-1173 RTTIAAMETI SVPAHPSKST SGTASPESPV EIQNPYLHVE PEKEALPLAP BACU001677/1-1127 RTTIAAMETI SVPAHASKST SGTASPESPV EIPNPYLNVE PEKEVLPLAP 851 900 ENSP00000341957/1-1134 ESLSPEDVGN ASTENSDMPA PSPGLDYEPE GVPDNSPNLQ NNPEEPNPEA ENSBTAP00000016985/1-1134 EPASPEEAGS ASTESNDAPA PSTGLEYVPE GVPDSSPNFQ NSVEEPNPEA ENSTTRP00000012995/1-1125 EPVSPGEAGS ASTESSDLPA PSPGLEYEPE GVPDSSPSFQ NNVEEPNPEA bmy_13238T0/1-1173 EPVSPEEAGS ASTESSDLPA PSPGLEYEPE GVPDSSPSFQ NNVEDPNPEA BACU001677/1-1127 EPVSPEEAGS ASTESSDLPA PSPGLEYEPE GVPDSSPSFQ NNLEEPNPEA 901 950 ENSP00000341957/1-1134 PHVLDVYLEE YPPYPPPPYP SGEPEGPGED SVSMRPPEIT GQVSLPPGKR ENSBTAP00000016985/1-1134 PPLLEVYLEE YPPYPPPPYP SGEPEGPGED SVSLRPPEIT GQVSLPPGKR ENSTTRP00000012995/1-1125 PPLLEVYLEE YPPYPPPPYP SGEPEGPGED PVSLRPPEIT GQVSLPPGKR bmy_13238T0/1-1173 PPLLEVYLEE YPPYPPPPYP SGEPEGPGED PVSLRPPEIT GQVSLPPGKR BACU001677/1-1127 PPLLEVYLEE YPPSPPPPYP SGEPEGPGED PVSLCPPEIT GQVSLPPGKR 951 1000 ENSP00000341957/1-1134 TNLRKTGSER IAHGMRVKFN PLALLLDSSL EGEFDLVQRI IYEVDDPSLP ENSBTAP00000016985/1-1134 TNLRKTGSER IAHGMRVKFN PLALLLDSSL EGEFDLVQRI IYEVDDPSLP ENSTTRP00000012995/1-1125 TNLRKTGSDR IAHGMRVKFN PLALLLDSSL EGEFDLVQRI IYEVDDPSLP bmy_13238T0/1-1173 TNLRKTGSER IAHGMRVKFN PLALLLDSSL EGEFDLVQRI IYEVDDPSLP BACU001677/1-1127 TNLRKTGSER IAHGMRVKFN PLALLLDSSL EGEFDLVQRI IYEVDDPSLP 1001 1050 ENSP00000341957/1-1134 NDEGITALHN AVCAGHTEIV KFLVQFGVNV NAADSDGWTP LHCAASCNNV ENSBTAP00000016985/1-1134 NDEGITALHN AVCAGHTEIV KFLVQFGVNV NAADSDGWTP LHCAASCNNV ENSTTRP00000012995/1-1125 NDEGITALHN AVCAGHTEIV KFLVQFGVNV NAADSDGWTP LHCAASCNSV bmy_13238T0/1-1173 NDEGITALHN AVCAGHTEIV KFLVQFGVNV NAADSDGWTP LHCAASCNSV BACU001677/1-1127 NDEGITALHN AVCAGHTEIV KFLVQFGVNV NAADSDGWTP LHCAASCNSV 1051 1100 ENSP00000341957/1-1134 QVCKFLVESG AAVFAMTYSD MQTAADKCEE MEEGYTQCSQ FLYGVQEKMG ENSBTAP00000016985/1-1134 QVCKFLVESG AAVFAMTYSD MQTAADKCEE MEEGYTQCSQ FLYGVQEKMG ENSTTRP00000012995/1-1125 QVCKFLVESG AAVFAMTYSD MQTAADKCEE TEEGYTQCSQ FLYGVQEKMG bmy_13238T0/1-1173 QVCKFLVESG AAVFAMTYSD MQTAADKCEE TEEGYTQCSQ FLYGVQEKMG BACU001677/1-1127 QVCKFLVESG AAVFAMTYSD MQTAADKCEE TEEGYTQCSQ FLYGVQEKMG 1101 1150 ENSP00000341957/1-1134 IMNKGVIYAL WDYEPQNDDE LPMKEGDCMT IIHREDEDEI EWWWARLNDK ENSBTAP00000016985/1-1134 IMNKGIIYAL WDYEPQNDDE LPMKEGDCMT IVRREDEDEI EWWWARLNDK ENSTTRP00000012995/1-1125 IMNKGVIYAL WDYEPQNDDE LPMKEGDCMT IIRREDEDEI EWWWARLNDK bmy_13238T0/1-1173 IMNKGVIYAL WDYEPQNDDE LPMKEGDCMT IIRREDEDEI EWWWARLNDK BACU001677/1-1127 IMNKGVIYAL WDYEPQNDDE LPMKEGDCMT IIRREDEDEI EWWWARLNDK 1151 1200 ENSP00000341957/1-1134 EGYVPRNLLG LYPRIKPRQR SLA ENSBTAP00000016985/1-1134 EGYVPRNLLG LYPRIKPRQR SLA ENSTTRP00000012995/1-1125 EGYVPRNLLG LYPRIKPRQR SLA bmy_13238T0/1-1173 EGYVPRNLLG LYPRIKPRQR SLA BACU001677/1-1127 EGYVPRNLLG LYPRIKPRQR SLA