KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 4 Type: P Thu May 15 17:00:12 2014 Check: 00 .. Name: ENSBTAP00000016986/1-712 Len: 780 Check: 6472 Weight: 1.00 Name: bmy_03553T0/1-780 Len: 780 Check: 6676 Weight: 1.00 Name: ENSTTRP00000006464/1-712 Len: 780 Check: 7335 Weight: 1.00 Name: BACU006262/1-720 Len: 780 Check: 5954 Weight: 1.00 // 1 50 ENSBTAP00000016986/1-712 ---------- ---------- -MWVC----L QLPV------ ---------F bmy_03553T0/1-780 RYKRPAPPRR ETPVAATGGQ GTWQLAYKKF RVKAHDEGID LRAGISSGNL ENSTTRP00000006464/1-712 ---------- ---------- -MRVL----F HLPV------ ---------L BACU006262/1-720 ---------- ---------- -MRVL----F HLPV------ ---------L 51 100 ENSBTAP00000016986/1-712 LASVTLFEVA ASDT--IAQA ASTTTISDAV SKVKIQVNKA FLDSRTRLKT bmy_03553T0/1-780 EHSCELWRAL SFATIFIQQA TRTFTISDAV SQVKIQVNKA FLDSRTRLKT ENSTTRP00000006464/1-712 LASLSLFQVA ESDT--NEQA TRTLTISDAV SQVKIQVNKA FLDSRTRLKT BACU006262/1-720 LASLSLFQVV ESDT--NEQA TRTFTISDAV SQVKIQVNKA FLDSRTRLKT 101 150 ENSBTAP00000016986/1-712 TLSSEAPTTQ QLSEYFKHAK GRTRTAIRNG QVWEESLKRL RRDTTLTNVT bmy_03553T0/1-780 AMSSEAPTTR QLSEYLKHAK GWTRMAIRNG QVWEESLKRL RHKATLTNVT ENSTTRP00000006464/1-712 AMSSEAPTTR QLSKYLKHAK GWTRMAIRHG QVWEESLKRL RQKVTLTNIT BACU006262/1-720 AMSSEAPTTR QLSEYLKHAK GWTRMAIRNG QVWEESLKRL RHKATLTNVT 151 200 ENSBTAP00000016986/1-712 DPSLDLTALS WEVGCGAPVP LVKCDENSPY RTITGDCNNR RSPALGAANR bmy_03553T0/1-780 DPSLDLTALS QEVGCGAPVP LVKCDENSPY RTITGDCNNR RNPALGASNR ENSTTRP00000006464/1-712 DLSLDFTALS QEVGCGAPVP LVKCDENSPY RTITGDCNNR RNPALGASNR BACU006262/1-720 DPSLELTALS QEVGCGVPVP LVKCDENSPY RTITGDCNNR RNPGLGASNR 201 250 ENSBTAP00000016986/1-712 ALARWLPAEY EDGLALPFGW TQRKTRNGFR VPLAREVSN- --------KI bmy_03553T0/1-780 ALARWLPAEY EDGLSLPFGW TPRKTRNGFP LPLVRADTGW GRAPSRRVKD ENSTTRP00000006464/1-712 ALARWLPAEY EDGLSLPFGW TPRKKRNGFP VPLAREVSN- --------KI BACU006262/1-720 ALARWLPAEY EDGLSLPFGW TPRKTRNGFP LPLAREVSN- --------KI 251 300 ENSBTAP00000016986/1-712 VGYLDEEGVL DQNRSLLFMQ WGQIVDHDLD FAPETELGSN EHSKTQCEEY bmy_03553T0/1-780 GSYLNEEGAL DQNRSLLFMQ WGQIVDHDLD FAPDTELGSS EYSKVQCDEH ENSTTRP00000006464/1-712 VGYLNEEGVL DPNRSLLLMQ WGQIVDHDLD FAPDTELESS EYSKVQCDEH BACU006262/1-720 VGYLNEEGAL DQNRSLLFMQ WGQIVDHDLD FAPDTELGSS EYSKVQCDEH 301 350 ENSBTAP00000016986/1-712 CIQGDNCFPI MFPKNDPKLK TQGKCMPFFR AGFVCPTPPY QSLAREQINA bmy_03553T0/1-780 CIQGDNCFPI MFPCNDPKVK TQGKCMPFFR AGFVCPTPPY QSLAREQINA ENSTTRP00000006464/1-712 CIQGDNCFPI MFPCNDPKVK TQGKCMPFFR AGFVCPTPPY QSLAREQINA BACU006262/1-720 CIQGDNCFPI MFPCNDPKVK TQGKCMPFFR AGFVCPTPPY QSLAREQINA 351 400 ENSBTAP00000016986/1-712 VTSFLDASLV YGSEPSLASR LRNLSSPLGL MAVNQEAWDH GLAYLPFNNK bmy_03553T0/1-780 LTSFLDASLV YSPEPSLAGR LRDLSSPLGL MAINQEAQDH GLAYPPFDNK ENSTTRP00000006464/1-712 LTSFLDASLV YSPEPSLASR LRDLSSPLGL MAINQEAQDH GLAYPPFDNK BACU006262/1-720 LTSFLDASLV YSPEPSLAGR LRDLSSPLGL MAINQEAQDH GLAYPPFDNK 401 450 ENSBTAP00000016986/1-712 KPSPCEFINT TARVPCFLAG DFRASEQILL ATAHTLLLRE HNRLARELKK bmy_03553T0/1-780 KPSPCEFINT TACVPCFLTG DPRASEQILL AVSHTLLLRE HNRLARELKR ENSTTRP00000006464/1-712 KPSPCEFINA TARVPCFLAG DPRASEQILL AVSHTLLLRE HNRLARELKR BACU006262/1-720 KPSPCEFINT TACVPCFLTG DPRASEQILL AISHTLLLRE HNRLARELKR 451 500 ENSBTAP00000016986/1-712 LNPHWNGEKL YQEARKILGA FIQIITFRDY LPIVLGSEMQ KWIPPYQGYN bmy_03553T0/1-780 LNPHWDGEKL YQEARKILGA FIQIITFRDY LPIVLGDEMQ KWIPPYQGYN ENSTTRP00000006464/1-712 LNPHWDGEKL YQEARKILGA FIQIITFRDY LPIVLGDEMQ KWIPPYQGYN BACU006262/1-720 LNPHWDGEKL YQEARKILGA FIQIITFRDY LPIVLGDEMQ KWIPPYQGYN 501 550 ENSBTAP00000016986/1-712 NSVDPRISNV FTFAFRFGHM EVPSTVSRLD ENYQPWGPEA ELPLHTLFFN bmy_03553T0/1-780 KSVDPRISNV FTFAFRFGHL EVPSTVFRLD ENYQPWGLEA ELPLHTLFFN ENSTTRP00000006464/1-712 ESVDPRISNV FTFAFRFGHL EVPSTVFRLD ENYQPWGLEA ELPLHTLFFN BACU006262/1-720 KSVDPRISNV FTFAFRFGHL EVPSTVFRLD ENYQPWGLEA ELPLHTLFFN 551 600 ENSBTAP00000016986/1-712 TWRIIKDGGI DPLVRGLLAK KSKLMNQDKM VTSELRNKLF QPTHKIHGFD bmy_03553T0/1-780 TWRIVKDGGI DPLVRGLLAK KSKSMNQNKM MTGELRNKLF QPTHTIHGFD ENSTTRP00000006464/1-712 TWRIVKDGGI DPLVRGLLAK KSKSMNQNKM MTGELRNKLF QPTHVIHGFD BACU006262/1-720 TWRIVKDGGI DPLVRGLLAK KSKSMNQNKM MTGELRNKLF QPTHTIHGFD 601 650 ENSBTAP00000016986/1-712 LAAINLQRCR DHGMPGYNSW RGFCGLSQPK TLKGLQTVLK NKILAKKLMD bmy_03553T0/1-780 LAAINIQRCR DHGMPGYNSW RGFCGLSQPQ TLKELHAVLK SKVLAEKLLV ENSTTRP00000006464/1-712 LAAINIQRCR DHGMPGYNSW RGFCGLSQPQ TLKQLHAVLK NKLLAEKLLV BACU006262/1-720 LAAINIQRCR DHGMPGYNSW RGFCGLSQPQ TLKELHAVLK NKVLAEKLLV 651 700 ENSBTAP00000016986/1-712 LYKTPDNIDI WIGGNAEPMV ERGRVGPLLA CLLGRQFQQI RDGDR----- bmy_03553T0/1-780 LYGTPANIDI WIGAIAEPLV ERGQVGPLLA CLLGRQFQQI RDGDRRTGEG ENSTTRP00000006464/1-712 LYGTPDNIDI WIGAIAEPLV ERGQVGHLLA CLLGRQFQQI RDGDR----- BACU006262/1-720 LYGTPANIDI WIGAIAEPLV ERGQVGPLLA CLLGRQFQQI RDGDRRVRPQ 701 750 ENSBTAP00000016986/1-712 ---------- --FWWENPGV FTEKQRDSLQ KVSFSRLICD NTHITKVPLH bmy_03553T0/1-780 PTAGLYGETL LLFWWENPGV FTEEQRNSLQ KMSLSRLVCD NTHITKVPLH ENSTTRP00000006464/1-712 ---------- --FWWENPGV FTEEQRNSLQ KMSLSRLVCD NTHVTKVPLH BACU006262/1-720 RGG------- --FWWENPGV FTEEQRNSLQ KMSLSRLVCD NTHVTKVPLH 751 800 ENSBTAP00000016986/1-712 AFQANNYPHD FVDCSTVDKL DLSPWASREN bmy_03553T0/1-780 PFQANSYPHG FVDCSAIDKL DLSPWASEEN ENSTTRP00000006464/1-712 PFQANSYPQG FVDCSAIDKL DLSPWTSEEN BACU006262/1-720 PFQANSYPHG FVDCSAIDKL DLSPWASEEN