KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 17:00:13 2014 Check: 00 .. Name: ENSBTAP00000016989/1-719 Len: 782 Check: 6062 Weight: 1.00 Name: ENSTTRP00000006470/1-721 Len: 782 Check: 968 Weight: 1.00 Name: ENSP00000225275/1-745 Len: 782 Check: 1963 Weight: 1.00 Name: bmy_03552T0/1-714 Len: 782 Check: 7537 Weight: 1.00 Name: BACU006261/1-719 Len: 782 Check: 7626 Weight: 1.00 // 1 50 ENSBTAP00000016989/1-719 ---------- ---------- ------MRLL LGLAGLLAVL IMLQPSEGVP ENSTTRP00000006470/1-721 TGALFS---K CPVGFGPYWA WGLAAEMKLP LGLAGLLVIL AMPQPSEGAA ENSP00000225275/1-745 MGVPFFSSLR CMVDLGPCWA GGLTAEMKLL LALAGLLAIL ATPQPSEGAA bmy_03552T0/1-714 ---------- ---------- ------MKLP LGLAGLLVIL ATPQPSEGAA BACU006261/1-719 ---------- ---------- ------MKLP LGLAGLLVIL ATPQPSEGAA 51 100 ENSBTAP00000016989/1-719 PAVP-GEVDT SVVLTCMEEA KRLVDKVYKE RRE-SIKQRL HSGLASPMEL ENSTTRP00000006470/1-721 PAVL-GEVET SVVLTCMEEA KRLVDKAYKE RRE-SIKRRL HSGSASPMDL ENSP00000225275/1-745 PAVL-GEVDT SLVLSSMEEA KQLVDKAYKE RRE-SIKQRL RSGSASPMEL bmy_03552T0/1-714 PAVLRGEVET SVVLTCMEEA KRLVDKAYKE RRESSIKQRL HSGSASPMEL BACU006261/1-719 PAVL-GEVET SVVLTCMEEA KRLVDKAYKE RRE-SIKQRL RSGSASPIEL 101 150 ENSBTAP00000016989/1-719 LSYFKQPVAA TRTAVRAADY LHVALSLLER KLRALWPGRF NVTDVLTPAQ ENSTTRP00000006470/1-721 LSYFKQPVAA TRTAVRAADY LHVALGLLER KLRPLWPGRF NVTG------ ENSP00000225275/1-745 LSYFKQPVAA TRTAVRAADY LHVALDLLER KLRSLWRRPF NVTDVLTPAQ bmy_03552T0/1-714 LSYFKQPVAA TRTAVRAADY LHVALGLLER KLRPLWPGRF NVTDVLTPAQ BACU006261/1-719 LSYFKQPVAA TRTAVRAADY LHVALGLLER KLRPLWPGRF NVTDVLTPAQ 151 200 ENSBTAP00000016989/1-719 LNLLSKTSGC AHQDLGVSCP EKDEYRTITG QCNNRRSPTL GASNRPFVRW ENSTTRP00000006470/1-721 ------RAGV A------RGW SRTWHQRPVH PC--RRSPTL GASNRA-ARW ENSP00000225275/1-745 LNVLSKSSGC AYQDVGVTCP EQDKYRTITG MCNNRRSPTL GASNRAFVRW bmy_03552T0/1-714 LNLLSKTSGC AYQDLGVRCP EEDKYRTITG QCNNRRSPTL GASNRAFARW BACU006261/1-719 LDLLSKTSGC AYQDLGVRCP EEDKYRTITG QCNNRRSPTL GASNRAFARW 201 250 ENSBTAP00000016989/1-719 LPAEYEDGFS LPFGWTPRVK RNGFPVPLAR AVSNEIVRFP TEKLTPDQQR ENSTTRP00000006470/1-721 LPAEYEDGFS LPFGWTPGVK RNGFPVPLAR AVSNDIVRFP TENLTPDQER ENSP00000225275/1-745 LPAEYEDGFS LPYGWTPGVK RNGFPVALAR AVSNEIVRFP TDQLTPDQER bmy_03552T0/1-714 LPAEYEDGFS LPFGWTPGVK RNGFPVSLAR AVSNAIVRFP TENLTPDQER BACU006261/1-719 LPAEYEDGFS LPFGWTPGVK RNGFPVPLAR AVSNAIVRFP TENLTPDQER 251 300 ENSBTAP00000016989/1-719 SLMFMQWGQL LDHDLDFSPE PAARVSFLTG INCETSCLQQ PPCFPLK--- ENSTTRP00000006470/1-721 SLMFMQWGQL LDHDLDFTPE PAARVSFLTG INCETSCLQQ PPCFPLK--- ENSP00000225275/1-745 SLMFMQWGQL LDHDLDFTPE PAARASFVTG VNCETSCVQQ PPCFPLK--- bmy_03552T0/1-714 SLMFMQWGQL LDHDLDFTPE PAARVSFLTG LNCETSCLQQ PPCFPLKVLP BACU006261/1-719 SLMFMQWGQL LDHDLDFTPK PAAHVSFLTG LNCEISCLQQ PPCFPLK--- 301 350 ENSBTAP00000016989/1-719 ---------- ---------- ---------- --IPPNDPRI KNQQDCIPFF ENSTTRP00000006470/1-721 ---------- ---------- ---------- --IPPDDPRI KNQRDCIPFF ENSP00000225275/1-745 ---------- ---------- ---------- --IPPNDPRI KNQADCIPFF bmy_03552T0/1-714 PCPTGQPAGS PEGQRSRKRT PPSPAGPLSV PQIPPDDPRI KNQRDCIPFF BACU006261/1-719 ---------- ---------- ---------- --IPPDDPRI KNQRDCIPFF 351 400 ENSBTAP00000016989/1-719 RSSPACTQSN ITIRNQINAL TSFVDASMVY GSEDPLAMRL RNLTNQLGLL ENSTTRP00000006470/1-721 RSSPACKGSN ITVRNQINAL TSFVDASMVY GSEDPLAMKL RNLTNQLGLL ENSP00000225275/1-745 RSCPACPGSN ITIRNQINAL TSFVDASMVY GSEEPLARNL RNMSNQLGLL bmy_03552T0/1-714 RSSPACEGGN ITIRNQINAL TSFVDASMVY GSEDALALRL RNQTNQLGLL BACU006261/1-719 RSSPACEGSN ITIRNQINAL TSFVDASMVY GSEDALALRL RNQTNQLGLL 401 450 ENSBTAP00000016989/1-719 AVNTRFQDNG RALLPFDTLR HDPCRLTNRS ANIPCFLAGD SRASEMPELT ENSTTRP00000006470/1-721 AVNTRFHDNG RALLPFDNLH DDPCLLTNRT ANIPCFLAGD SRSSEMPELT ENSP00000225275/1-745 AVNQRFQDNG RALLPFDNLH DDPCLLTNRS ARIPCFLAGD TRSSEMPELT bmy_03552T0/1-714 AVNTRFHDNG RALLPFDNLH DDPCLLTNRT ANIPCFLAGQ S--------- BACU006261/1-719 AVNTRFQDNG RALLPFGNLH DDPCLLTNRS AHIPCFLAGD TRSSEMPELT 451 500 ENSBTAP00000016989/1-719 SMHTLFVREH NRLAKELKRL NAHWNGERLY QEARKIVGAM VQIITYRDYL ENSTTRP00000006470/1-721 SMHTLFLREH NRLATELKRL NPCWNGEKLY QEARKIVGAM VQIITYRDYL ENSP00000225275/1-745 SMHTLLLREH NRLATELKSL NPRWDGERLY QEARKIVGAM VQIITYRDYL bmy_03552T0/1-714 ---------- ---------- ---WAGT--W ADA------- -GIITYRDYL BACU006261/1-719 SMHTLFLREH NRLATELKRL NPCWNGEKLY QEARKIVGAM VQIITYRDYL 501 550 ENSBTAP00000016989/1-719 PLVLGREAMR KYLRPYCSYN DSVDPRISNV FTNAFRYGHT LIQPFMFRLN ENSTTRP00000006470/1-721 PLVLGPEAMR KYLPEYRSYN DSVDPRIANV FTNAFRYGHT LIQPFMFRLN ENSP00000225275/1-745 PLVLGPTAMR KYLPTYRSYN DSVDPRIANV FTNAFRYGHT LIQPFMFRLD bmy_03552T0/1-714 PLVLGPVAMR KYLPKYHAYN DSVDPRIANV FTNAFRYGHT LIQPFMFRLN BACU006261/1-719 PLVLGPVAMR KYLPKYRAYN DSVDPRIANV FTNAFRYGHT LIQPFMFRLN 551 600 ENSBTAP00000016989/1-719 SRYQPMQPNP RVPLSRVFFA SWRVVLEGGI DPILRGLMAT PAKLNRQNQI ENSTTRP00000006470/1-721 DQYQPMQPNP RVPLSKVFFA SWRVVLEXXX XXXXXXXXXX XXXXXXXXXX ENSP00000225275/1-745 NRYQPMEPNP RVPLSRVFFA SWRVVLEGGI DPILRGLMAT PAKLNRQNQI bmy_03552T0/1-714 NQYQPMQPNP RVPLSKVFFA SWRVVLEGGI DPILRGLMAT PAKLNRQNQI BACU006261/1-719 NQYQPMQPNP RVPLSKVFFA SWRVVLEGGI DPILRGLMAT PAKLNRQNQI 601 650 ENSBTAP00000016989/1-719 AVDEIRERLF EQVMRIGLDL PALNMQRSRD HGLPGYNAWR RFCGLPVPNT ENSTTRP00000006470/1-721 XXXXXXXXXX XXVMRIGLDL PALNMQRSRD HGLPGYNAWR RFCGLPQPST ENSP00000225275/1-745 AVDEIRERLF EQVMRIGLDL PALNMQRSRD HGLPGYNAWR RFCGLPQPET bmy_03552T0/1-714 AVDEIRERLF EQVMRIGLDL PALNMQRSRD HGLPGYNAWR RFCGLPQPST BACU006261/1-719 AVDEIRERLF EQVMRIGLDL PALNMQRSRD HGLPGYNAWR RFCGLPQPST 651 700 ENSBTAP00000016989/1-719 VGELGTVLRN LDLARRLMKL YQTPNNIDIW IGGVAEPLNK NGRVGPLLAC ENSTTRP00000006470/1-721 VGELGTVLKN LDLARKLMDQ YGTPNNIDIW MGGVAEPLNS KGRVGLLLAC ENSP00000225275/1-745 VGQLGTVLRN LKLARKLMEQ YGTPNNIDIW MGGVSEPLKR KGRVGPLLAC bmy_03552T0/1-714 VGELGTVLKN LDLARKLMAQ YGTPSNIDIW MGAVAEPLNS EGRVGLLLAC BACU006261/1-719 VGELGTVLKN LDLARKLMAQ YGTPSNIDIW MGAVAEPLNS KGRVGLLLAC 701 750 ENSBTAP00000016989/1-719 LIGTQFRKLR DGDRFWWQNK GVFSKKQQQA LAKISLPRII CDNTGITFVS ENSTTRP00000006470/1-721 LIGTQFRKLR DGDRFWWQNK GVFSPQQQQA LAKISLPRII CDNTGITVVS ENSP00000225275/1-745 IIGTQFRKLR DGDRFWWENE GVFSMQQRQA LAQISLPRII CDNTGITTVS bmy_03552T0/1-714 LIGTQFRKLR DGDRFWWQNK GVFSPQQQQA LAKISLPRII CDNTGITVVS BACU006261/1-719 LIGTQFRKLR DGDRFWWQNK GVFSPQQQQA LAKISLPRII CDNTGITVVS 751 800 ENSBTAP00000016989/1-719 KNNIFMSNRF PRDFVRCSRV PALNLAPWRE RR ENSTTRP00000006470/1-721 KNNIFESNTF PRDFVNCSAL PALDLGSWRD RD ENSP00000225275/1-745 KNNIFMSNSY PRDFVNCSTL PALNLASWRE AS bmy_03552T0/1-714 KNNIFASNTF PRDFVNCSAL PALDLASWRD TD BACU006261/1-719 KNNIFASNTF PRDFVNCSAL PALDLASWRD TD