KEY:
ENSP* - Homo sapiens (Human)
ENSBTA* - Bos taurus (Cow)
ENSTTR* - Tursiops truncatus (Dolphin)
bmy_* - Balaena mysticetus (Bowhead whale)
BACU* - Balaenoptera acutorostrata (Minke whale)
Copy from below the line for a valid .msf file.
----------------------------------------------------------------------------------
NoName MSF: 4 Type: P Thu May 15 17:00:15 2014 Check: 00 ..
Name: ENSTTRP00000016177/1-209 Len: 264 Check: 8660 Weight: 1.00
Name: ENSBTAP00000017001/1-194 Len: 264 Check: 1098 Weight: 1.00
Name: bmy_15976T0/1-262 Len: 264 Check: 7867 Weight: 1.00
Name: ENSP00000300811/1-188 Len: 264 Check: 700 Weight: 1.00
//
1 50
ENSTTRP00000016177/1-209 ---------- ---------- --------IP LYLLTSCIRG LVARVAVESW
ENSBTAP00000017001/1-194 ---------- ---------- ---------- ---------- ----------
bmy_15976T0/1-262 PTCSAGAKPG RAAAAAEPEL GPPAPHPSLP ADILHQRTCG --QRVAVESW
ENSP00000300811/1-188 ---------- ---------- ---------- ---------- ----------
51 100
ENSTTRP00000016177/1-209 PGRDTAQLLL CSCLLSPPLA MTETREPAET GGYASLEEDD EDLSPGPEHS
ENSBTAP00000017001/1-194 ---------- ---------- MTETREPAET GGYASLEEDD EDLSPGPEHS
bmy_15976T0/1-262 PGRDTAQLLL CSCLLSPPLA MTETREPAET GGYASLEEDD EDLSPGPEHS
ENSP00000300811/1-188 ---------- ---------- MTETREPAET GGYASLEEDD EDLSPGPEHS
101 150
ENSTTRP00000016177/1-209 SDSEYTLSEP DSEEEEDEEE EEEETTDDPE YDXXXXXXXX XXXXXXXXXX
ENSBTAP00000017001/1-194 SDSEYTLSEP DSEEEDEEEE EEEETTDDPE YDPGYKVKQR LGGGRGGPSR
bmy_15976T0/1-262 SDSEYTLSEP DSEEEEDEEE EEEETTDDPE YDPGYKVKQR LGGGRGGPSR
ENSP00000300811/1-188 SDSEYTLSEP DSEEEEDEEE EEEETTDDPE YDPGYKVKQR LGGGRGGPSR
151 200
ENSTTRP00000016177/1-209 XXXXXXX--- XXXXXXXXXX XXXXXXXXXX TPP---CCTG TS---CCMPG
ENSBTAP00000017001/1-194 RAPRAAQPPG PPAQPCQLCG RSPLGEAPPG TPPCRLCCPA VAPQEAPAPE
bmy_15976T0/1-262 RAPRAAQLPG PPAQPCQLCG RSALGEAPPG TPPCRLCCPA TAPQEAPAPE
ENSP00000300811/1-188 RAPRAAQ--- PPAQPCQLCG RSPLGEAPPG TPPCRLCCPA TAPQEAPAPE
201 250
ENSTTRP00000016177/1-209 VRCRERPDLG SLAEGVGW-- -------EEG AEDIGVVAV- --------VG
ENSBTAP00000017001/1-194 TRALGEEEGG APRAGEGRPT GRDEEDEEEE EEEEGTYHCT ECEDSFDSLG
bmy_15976T0/1-262 SRALGEEEEE PPRAGEGRPA GREEEEEEEE EEEEGTYHCT ECEDSFDNLG
ENSP00000300811/1-188 GRALGEEEEE PPRAGEGRPA GR---EEEEE EEEEGTYHCT ECEDSFDNLG
251 300
ENSTTRP00000016177/1-209 DGVPLICVVL AVVV
ENSBTAP00000017001/1-194 ELHGHFMLHA RGEV
bmy_15976T0/1-262 ELHGHFMLHA RGEV
ENSP00000300811/1-188 ELHGHFMLHA RGEV