KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 4 Type: P Thu May 15 17:00:16 2014 Check: 00 .. Name: ENSTTRP00000001234/1-501 Len: 721 Check: 6565 Weight: 1.00 Name: ENSP00000383690/1-686 Len: 721 Check: 2300 Weight: 1.00 Name: bmy_20128T0/1-720 Len: 721 Check: 4443 Weight: 1.00 Name: ENSBTAP00000017013/1-686 Len: 721 Check: 7197 Weight: 1.00 // 1 50 ENSTTRP00000001234/1-501 ---------- ---------- ---------- ---------- ---------- ENSP00000383690/1-686 ---------- ---------- ---MRLLTLL GLLCGSVATP -LGPKWPEPV bmy_20128T0/1-720 MGSVPRMPGA GRLGAGPAVG QTDQRLLVIL GLLWGSAAAP SSGPQWPKPV ENSBTAP00000017013/1-686 ---------- ---------- ---LRLLVFL GLLWGLVAAS -SGPQWPKPV 51 100 ENSTTRP00000001234/1-501 ---------- ---------- ---------- ---------- ---------- ENSP00000383690/1-686 FGRLASPGFP GEYANDQERR WTLTAPPGYR LRLYFTHFDL ELSHLCEYDF bmy_20128T0/1-720 FGRLASPGFP GKYANNQQQR WTLTAPPGYR LRLYFTHFRL EPSYLCEYDF ENSBTAP00000017013/1-686 FGRLASPGFP DKYANNQERR WALTAPPGYR LRLYFTHFQL EPSYLCEYDF 101 150 ENSTTRP00000001234/1-501 ---------- ---------- ---------- ---------- ---------- ENSP00000383690/1-686 VKLSSGAKVL ATLCGQESTD TERAPGKDTF YSLGSSLDIT FRSDYSNEKP bmy_20128T0/1-720 VKLSAGPAVL ATLCGSESTD TERAPGNDTF YSPGSSLDVT FRSDYSNEKP ENSBTAP00000017013/1-686 VKLSAGTKEL ATLCGSESTD TERAPGNDTF YSPGSSLDVT FRSDYSNEKP 151 200 ENSTTRP00000001234/1-501 ---------- ---------- ---------- ---------- ---------- ENSP00000383690/1-686 FTGFEAFYAA EDIDECQVAP GEAPTCDHHC HNHLGGFYCS CRAGYVLHRN bmy_20128T0/1-720 FAGFEAFYSA EDIDECQVPP GEAPTCEHHC HNYLGGFYCS CRMGYVLHRN ENSBTAP00000017013/1-686 FTGFEAFYSA EDIDECQVPP GEAPTCDHHC HNHLGGFYCS CRVGYVLHRN 201 250 ENSTTRP00000001234/1-501 ------LCSG QVFTARSGVL SSPGYPQPYP KLSSCTYSIR LEEGFRVTLD ENSP00000383690/1-686 KRTCSALCSG QVFTQRSGEL SSPEYPRPYP KLSSCTYSIS LEEGFSVILD bmy_20128T0/1-720 KHTCSALCSG QVFTARSGVL SSPGYPQPYP KLSSCTYSIR LEEGFRVTLD ENSBTAP00000017013/1-686 KRTCSALCSD QVFTARSGEL SSPEYPQPYP KLSSCTYSIH LEEGFHVILD 251 300 ENSTTRP00000001234/1-501 FMESFDVEMH PETQCPYDSL KIQTDKEEYG PFCGKTLPRR IETKSNTVTI ENSP00000383690/1-686 FVESFDVETH PETLCPYDFL KIQTDREEHG PFCGKTLPHR IETKSNTVTI bmy_20128T0/1-720 FVESFDVETH PETQCPYDSL KIQTDKEEYG PFCGKTLPRR IETKSNTVTI ENSBTAP00000017013/1-686 FVESFDVETH PETLCPYDSL KIRTDKAEYG PFCGKTLPSR IETKSNTVTI 301 350 ENSTTRP00000001234/1-501 TFATDESGDH TGWKIHYNST AQPCPDPTAP PNGHISPVQA TYIMKDRFFV ENSP00000383690/1-686 TFVTDESGDH TGWKIHYTST AQPCPYPMAP PNGHVSPVQA KYILKDSFSI bmy_20128T0/1-720 TFATDQSGDH TGWKIHYNST AQPCPDPTAP PNGHISPVQA KYILKDRFFV ENSBTAP00000017013/1-686 TFTTDQSGDH MGWKVRYNST AEPCPDPLAP PNGRISPVQA KYILKDHFSV 351 400 ENSTTRP00000001234/1-501 FCESGYELLQ GYWPLKSFVA VCQTDGSWDQ PMPECSIVDC GPPDDLPSGQ ENSP00000383690/1-686 FCETGYELLQ GHLPLKSFTA VCQKDGSWDR PMPACSIVDC GPPDDLPSGR bmy_20128T0/1-720 FCESGYELLQ GYWPLKSFVA VCQPDGSWDK PMPECSIVDC GPPDDLPSGQ ENSBTAP00000017013/1-686 FCETGYELLQ GNLPLKSFAA VCQKDGSWDR PMPVCSIVDC GPPDDLPSGQ 401 450 ENSTTRP00000001234/1-501 VDYITGAEVT IYKAVVKYRC NE-FYTMRTD DGKYVCEADG FWTSSKGEKS ENSP00000383690/1-686 VEYITGPGVT TYKAVIQYSC EETFYTMKVN DGKYVCEADG FWTSSKGEKS bmy_20128T0/1-720 VDYITGTEVT IYKAVVKYRC NE-FYTMRTN DGKYVCEADG FWTSSKGEKS ENSBTAP00000017013/1-686 VEYITGPAVT TYRAVVKYRC NE-FYTMTTN DGKYVCEADG FWTSSKREKS 451 500 ENSTTRP00000001234/1-501 PPVCEPVCGI STRTTERRIY GGQNAKL-DF PWQALLLGKT VAA-ALLYDN ENSP00000383690/1-686 LPVCEPVCGL SARTTGGRIY GGQKAKPGDF PWQVLILGGT TAAGALLYDN bmy_20128T0/1-720 LPVCEPVCGI STRTTEGRIY GGQNAKLGDF PWQALLLGKT TAAGALLYDN ENSBTAP00000017013/1-686 LPVCEPVCGI STRTTEGRIY GGQNAKLGYF PWQVLLLGKT MAAGALLYDN 501 550 ENSTTRP00000001234/1-501 WILTAAHAVY EQRGDASSLD IRMGALKRLS PHYTQAWAEA XXXXXXXXXX ENSP00000383690/1-686 WVLTAAHAVY EQKHDASALD IRMGTLKRLS PHYTQAWSEA VFIHEGYTHD bmy_20128T0/1-720 WILTAAHAVY EQREDASSLD IRMGALKRLS PHYTQAWAEA IFIHERYAHN ENSBTAP00000017013/1-686 WILTAAHAVY DQREDTASLQ IRMGALKRIS PNYTQAWAEA IFIHESYIHD 551 600 ENSTTRP00000001234/1-501 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX ENSP00000383690/1-686 AGFDNDIALI KLNNKVVINS NITPICLPRK EAESFMRTDD IGTASGWGLT bmy_20128T0/1-720 AGYDNDIALI KLKNKVVLNS NIMPICLPSK EAESFMRTNH IGTASGWGLT ENSBTAP00000017013/1-686 AGYDNDIALI KLKNKVAINS NIMPICLPRK EAESFMRTND IGTASGWGLT 601 650 ENSTTRP00000001234/1-501 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX ENSP00000383690/1-686 QRGFLARNLM YVDIPIVDHQ KCTAAYEKPP YPRGSVTANM LCAGLESGGK bmy_20128T0/1-720 QRGFLARNLM FVDIPVVDHQ NCTAAYEKKS YPGGRVTDNM LCAGLESGGK ENSBTAP00000017013/1-686 QRGFLARNLK FIDIPVVDHQ KCTAAYEKKS YPEGRVTDNM LCAGLQSGGK 651 700 ENSTTRP00000001234/1-501 XXXXXXXXGA LVFLHNETQK WFVGGIVSWG SINCGEADQY GVYTKVINYI ENSP00000383690/1-686 DSCRGDSGGA LVFLDSETER WFVGGIVSWG SMNCGEAGQY GVYTKVINYI bmy_20128T0/1-720 DSCKGDSGGA LVFLHNETQK WFVGGIVSWG SINCGEADQR PQQQTDLRNI ENSBTAP00000017013/1-686 DSCRGDSGGA LVFLDNETQK WFVGGIVSWG SINCGEADQY GVYTKVINYI 701 750 ENSTTRP00000001234/1-501 PWIKNIIN-S F--------- - ENSP00000383690/1-686 PWIENIIS-D F--------- - bmy_20128T0/1-720 NTTVAVPPQN QTKLQGRIKY P ENSBTAP00000017013/1-686 PWIKSIINSN F--------- -