KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 17:00:27 2014 Check: 00 .. Name: ENSTTRP00000003809/1-301 Len: 355 Check: 5523 Weight: 1.00 Name: bmy_10301T0/1-336 Len: 355 Check: 7596 Weight: 1.00 Name: ENSP00000372667/1-263 Len: 355 Check: 6722 Weight: 1.00 Name: BACU003167/1-340 Len: 355 Check: 2219 Weight: 1.00 Name: ENSBTAP00000017071/1-342 Len: 355 Check: 472 Weight: 1.00 // 1 50 ENSTTRP00000003809/1-301 ------MSKK EDLQVNISTQ ELWEEM--LS SKGLTVV-DV YQGWCGPCKP bmy_10301T0/1-336 MRWALVPAER SCFLVPRSRR RLPRLVRPLQ ARGEPLPEDE DRGRPGPSAF ENSP00000372667/1-263 ---------- ---------- -----M--LS SKGLTVV-DV YQGWCGPCKP BACU003167/1-340 ---MGSKKKE TALQVNISTQ ELWEEM--LS SKGLTVV-DV YQGWCGPCTP ENSBTAP00000017071/1-342 ---MGSKKKE IALQVNVSTQ ELWEEM--LS SKGLTVV-DV YQGWCGPCKP 51 100 ENSTTRP00000003809/1-301 VVSLFQKMRI EVGLDLLHFA LAEADCLDVL KKYRGRCEPT FLFYA----- bmy_10301T0/1-336 CIS------- ----KVLSQH NAEADCLDVL EKYRGRCEPT FLFYAGGELV ENSP00000372667/1-263 VVSLFQKMRI EVGLDLLHFA LAEADRLDVL EKYRGKCEPT FLFYA----- BACU003167/1-340 VVSLFQKMRI EVGLDLLHFA LAEADCLDVL EKYRGRCEPT FLFYAGGELV ENSBTAP00000017071/1-342 VVSLFQKMRV EVGPDLLHFA SEEVSCLPRL PQSRGTFSKS FLGYVGGELV 101 150 ENSTTRP00000003809/1-301 ---------- ---------- AEKIVLAEGR ERRVIEDEAL SDEDECFSHE bmy_10301T0/1-336 ALVRGANAPL LEKTIQEQLQ AEKRVLAEGR ERRVIKDEAL SDEDECFSHE ENSP00000372667/1-263 ---------- ---------- ---------- ----IKDEAL SDEDECVSHG BACU003167/1-340 ALVRGANAPL LQKTIREQLQ AEKRVLAEGR ERRVIKDEAL SDEDECFSHE ENSBTAP00000017071/1-342 AVVRGANAPL LEKTIREQLE AEKRVLAEGR ERRVIKDEAL SDEDECFSHE 151 200 ENSTTRP00000003809/1-301 KEDGDDEDAX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX bmy_10301T0/1-336 KEDGDDEDAV SSEKACTLAV IKPDAVVHGK TDEIIMKIQE AGFDILTNEE ENSP00000372667/1-263 KNNGEDEDMV SSERTCTLAI IKPDAVAHGK TDEIIMKIQE AGFEILTNEE BACU003167/1-340 KEDGDDEDAV SSQKACTLAV IKPDAVVHGK TDEIIMKIQE AGFDILTNEE ENSBTAP00000017071/1-342 KNNGDDEDLV SSEKACTLAI IKPDAVVHGK TDEIIMKIQE AGFDILTNEE 201 250 ENSTTRP00000003809/1-301 XXXXXXXXXX XXXXXXXXEA FKKLVHHMCS GPSHLLNLTR TEGTEEVVTA bmy_10301T0/1-336 RTMTEAEMRL FYQHRAGEEA FEKLVHHMCS GPSHLLILTR TEGTEDVVTA ENSP00000372667/1-263 RTMTEAEVRL FYQHKAGEEA FEKLVHHMCS GPSHLLILTR TEGFEDVVTT BACU003167/1-340 RTMTEAEMRL FYQHRAGEEA FEQLVHHMCS GPSRLLILTR TEGTEDVVTA ENSBTAP00000017071/1-342 RTMTEAEMRL FYQHRAGEDT FEKLVHHMCS GPSHLLILAR TEGTEDVVTA 251 300 ENSTTRP00000003809/1-301 WQTLMGPCDP DVARREQPDS LRAQYGTEMP FNAVHGSRDS EDARRELTLL bmy_10301T0/1-336 WQTLMGPCDP DVARREQPDS LRAQYGTEMP FNAVHGSRDS EDARRELALL ENSP00000372667/1-263 WRTVMGPRDP NVARREQPES LRAQYGTEMP FNAVHGSRDR EDADRELALL BACU003167/1-340 WQTLMGPCDP DVARREQPDS LRAQHGTEMP FNAVHGSRDS EDARRELALL ENSBTAP00000017071/1-342 WRTLMGPCDP HVARREQPDS LRAQYGTEMP FNAVHGSWDS EDARRELALL 301 350 ENSTTRP00000003809/1-301 FPSFKFSDQI PE-APLGLEA EG-EGAGEAL YSPEDVD--- ---------- bmy_10301T0/1-336 FPSFKFSDQV PE-APLG--- ----KSSRQI WSVLNLQRGW GAGTDSNYVV ENSP00000372667/1-263 FPSLKFSDKD TE-APQG--- ---ESSTQPR LKITDLD--- ---------- BACU003167/1-340 FPSFKFSDQV PE-APLGLEA EG-EGPGEAL CSPEDVDEAA RDQGEAVR-- ENSBTAP00000017071/1-342 FPGFQFSDQI PESAPLGHEA EGAEGPNKML CSPEDVDEAA RDQSEATS-- 351 400 ENSTTRP00000003809/1-301 ----- bmy_10301T0/1-336 TKSSV ENSP00000372667/1-263 ----- BACU003167/1-340 ----- ENSBTAP00000017071/1-342 -----