KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 17:00:27 2014 Check: 00 .. Name: ENSP00000266088/1-664 Len: 689 Check: 8380 Weight: 1.00 Name: ENSBTAP00000017073/1-664 Len: 689 Check: 4450 Weight: 1.00 Name: ENSTTRP00000000237/1-664 Len: 689 Check: 6445 Weight: 1.00 Name: bmy_01574T0/1-595 Len: 689 Check: 2909 Weight: 1.00 Name: BACU003307/1-662 Len: 689 Check: 1290 Weight: 1.00 // 1 50 ENSP00000266088/1-664 MDSSTWSPKT TAVTRPVETH ELIRNAADIS IIVIYFVVVM AVGLWAMFST ENSBTAP00000017073/1-664 MDSSTWSPPA TATAEPLPPY ERIRNAADIS VIVIYFVVVM AVGLWAMFST ENSTTRP00000000237/1-664 MDSSTWSPAT TATAEPLKPY ERIRNAADIS VIVVYFVVVM AVGLWAMFST bmy_01574T0/1-595 MDSSTWSPAT TATAEPLKAY ERIRNAADIS VIVVYFVVVM AVGLWAMFST BACU003307/1-662 MDSSTWSPAT TATAEPLKAY ERIRNAADIS VIVVYFVVVM AVGLWAMFST 51 100 ENSP00000266088/1-664 NRGTVGGFFL AGRSMVWWPI GASLFASNIG SGHFVGLAGT GAASGIAIGG ENSBTAP00000017073/1-664 NRGTVGGFFL AGRSMVWWPI GASLFASNIG SGHFVGLAGT GAAAGIATGG ENSTTRP00000000237/1-664 NRGTVGGFFL AGRSMVWWPI GASLFASNIG SGHFVGLAGT GAAAGIATGG bmy_01574T0/1-595 NRGTVGGFFL AGRSMVWWPI GASLFASNIG SGHFVGLAGT GAAAGIATGG BACU003307/1-662 NRGTVGGFFL AGRSMVWWPI GASLFASNIG SGHFVGLAGT GAAAGIATGG 101 150 ENSP00000266088/1-664 FEWNALVLVV VLGWLFVPIY IKAGVVTMPE YLRKRFGGQR IQVYLSLLSL ENSBTAP00000017073/1-664 FEWNALILVV VLGWVFVPIY IKAGVVTMPE YLRKRFGGQR IQVYLSVLSL ENSTTRP00000000237/1-664 FEWNALFLVV LLGWVFVPIY IKAGVVTMPE YLRKRFGGKR IQVYLSVLSL bmy_01574T0/1-595 FEWN------ ---------- ----VVTMPE YLRKRFGGKR IQVYLSVLSL BACU003307/1-662 FEWNALFLVV VLGWVFVPIY IKAGVVTMPE YLRKRFGGKR IQVYLSVLSL 151 200 ENSP00000266088/1-664 LLYIFTKIS- ---------- ---------- ----ADIFSG AIFINLALGL ENSBTAP00000017073/1-664 VLYIFTKIS- ---------- ---------- ----ADIFSG AIFINLALGL ENSTTRP00000000237/1-664 LLYIFTKIS- ---------- ---------- ----ADIFSG AIFINLALGL bmy_01574T0/1-595 LLYVFTKISH RRQAPCTLQP AASLPPTPAL LSFQADIFSG AIFINLALGL BACU003307/1-662 LLYVFTKIS- ---------- ---------- ----ADIFSG AIFINMALGL 201 250 ENSP00000266088/1-664 NLYLAIFLLL AITALYTITG GLAAVIYTDT LQTVIMLVGS LILTGFAFHE ENSBTAP00000017073/1-664 DLYLAIFILL AITALYTITG GLAAVIYTDT LQTVIMLLGS FILTGFAFHE ENSTTRP00000000237/1-664 NLYLAIFILL VITALYTITG GLAAVIYTDT LQTVIMLVGS FILTGFAFHE bmy_01574T0/1-595 NLYLAIFILL VITALYTITG GLAAVIYTDT LQTVIMLVGS FILTGFAFHE BACU003307/1-662 NLYLAIFILL VITALYTITG GLAAVIYTDT LQTVIMLVGS FILTGFAFHE 251 300 ENSP00000266088/1-664 VGGYDAFMEK YMKAIPTIVS DGNTTFQEKC YTPRADSFHI FRDPLTGDLP ENSBTAP00000017073/1-664 VGGYGAFVTK YMNAIPTVTS YGNTTIKAEC YTPRADSFHI FRDPLKGDLP ENSTTRP00000000237/1-664 VGGYDAFMTK YMNAIPTVIS DGNTTIKKEC YTPRADSFHI FRDPLKGDLP bmy_01574T0/1-595 VGGYDAFMTK YMDAIPTVIS DGNTTIRKEC YTPRADSFHL FRDPLKGDLP BACU003307/1-662 VGGYDAFMTK YMNAIPTVIS DGNTTIRKEC YTPRADSFHL FRDPLKGDLP 301 350 ENSP00000266088/1-664 WPGFIFGMSI LTLWYWCTDQ VIVQRCLSAK NMSHVKGGCI LCGYLKLMPM ENSBTAP00000017073/1-664 WPGLIFGLTI ISLWYWCTDQ VIVQRCLSAK NMSHVKAGCI MCGYLKLLPM ENSTTRP00000000237/1-664 WPGLIFGLSI LALWYWCTDQ VIVQRCLSAK NMSHVKAGCI MCGYLKLLPM bmy_01574T0/1-595 WPGLIFGLSI LALWYWCTDQ VIVQRCLSAK NMSHVKAGCI MCGYLKLLPM BACU003307/1-662 WPGLIFGLSI LALWYWCTDQ VIVQRCLSAK NMSHVKAGCI MCGYLKLLPM 351 400 ENSP00000266088/1-664 FIMVMPGMIS RILYTEKIAC VVPSECEKYC GTKVGCTNIA YPTLVVELMP ENSBTAP00000017073/1-664 FLMVMPGMIS RILFTEKVAC TVPSECEKYC GTKVGCTNIA YPTLVVELMP ENSTTRP00000000237/1-664 FLMVMPGMIS RILYTEKIAC TVPSECEKYC GTKVGCTNMA YPTLVVELMP bmy_01574T0/1-595 FLMVMPGMIS RILYTEKVAC TVPSECEKYC GTKVGCTNIA YPTLVVELMP BACU003307/1-662 FLMVMPGMIS RILYTEKIAC TVPSECEKYC GTKVGCTNIA YPTLVVELMP 401 450 ENSP00000266088/1-664 NGLRGLMLSV MLASLMSSLT SIFNSASTLF TMDIYAKVRK RASEKELMIA ENSBTAP00000017073/1-664 NGLRGLMLSV MLASLMSSLT SIFNSASTLF TMDIYTKIRK KASEKELMIA ENSTTRP00000000237/1-664 NGLRGLMLSV MLASLMSSLT SIFNSASTLF TMDIYTKIRK RASEKELMIA bmy_01574T0/1-595 NGLRGLMLSV MLASLMSSLT SIFNSASTLF TMDIYTKIRK RASEKELMIA BACU003307/1-662 NGLRGLMLSV MLASLMSSLT SIFNSASTLF TMDIYTKIRK RASEKELMIA 451 500 ENSP00000266088/1-664 GRLFILVLIG ISIAWVPIVQ SAQSGQLFDY IQSITSYLGP PIAAVFLLAI ENSBTAP00000017073/1-664 GRLFMLVLIG VSIAWVPIVQ SAQSGQLFDY IQSITSYLGP PIAAVFLLAI ENSTTRP00000000237/1-664 GRLFMLVLIG ISIAWVPIVQ SAQSGQLFDY IQSITSYLGP PIAAVFLLAI bmy_01574T0/1-595 GRLFMLVLIG ISIAWVPIVQ SAQSGQLFDY IQSITSYLGP PIAAVFLLAI BACU003307/1-662 GRLFMLVLIG ISIAWVPIVQ SAQSGQLFDY IQSITSYLGP PIAAVFLLAI 501 550 ENSP00000266088/1-664 FWKRVNEPGA FWGLILGLLI GISRMITEFA YGTGSCMEPS NCPTIICGVH ENSBTAP00000017073/1-664 FCKRVNEPGA FWGLIIGFLI GVSRMITEFA YGTGSCMEPS NCPTIICGVH ENSTTRP00000000237/1-664 FCKRVNEQGA FWGLIIGFVI GVSRMIAEFA YGTGSCMEPS NCPTIICGVH bmy_01574T0/1-595 FCKRVNEQ-- ---------- ---------- ---------- ---------- BACU003307/1-662 FCKRVNEQGA FWGLIIGFVI GVSRMIAEFA YGTGSCMEPS NCPTVICGVH 551 600 ENSP00000266088/1-664 YLYFAIILFA ISFITIVVIS LLTKPIPDVH LYRLCWSLRN SKEERIDLDA ENSBTAP00000017073/1-664 YLYFAIILFV ITIIVILAVS LFTKPIADVH LYRLCWSLRN SKEERIDLDA ENSTTRP00000000237/1-664 YLYFAIILFV ISLIIILAVS LFTKPIPDVH LYRLCWSLRN SKEERIDLDA bmy_01574T0/1-595 ---------- ---------- ---------- LYRLCWSLRN SKEERIDLDA BACU003307/1-662 YLYFAIILFV ISLIIILAVS LFTKPIPDVH LYRLCWSLRN SKEERIDLDA 601 650 ENSP00000266088/1-664 EEENIQEGPK ETIEIETQVP EKKKGIFRRA YDLFCGLEQH GAPKMTEEEE ENSBTAP00000017073/1-664 EDEDVQDARE DALEIDTEAS EEKKGCFRRA YDMFCGLDQQ KAPKMTKEEE ENSTTRP00000000237/1-664 EEEDIQETSE ETIETETEVP EEKKGCFRRA YDLFCGLDQQ KGPKMTKEEE bmy_01574T0/1-595 GEEDIQETPE ETIEIE--VP EEKKGCFRRA YDLFCGLDQQ KGPKMTKEEE BACU003307/1-662 GEEDIQETPE ETIEIE--VP EEKKGCFRRA YDLFCGLDQQ KGPKMTKEEE 651 700 ENSP00000266088/1-664 KAMKMKMTDT SEKPLWRTVL NVNGIILVTV AVFCHAYFA ENSBTAP00000017073/1-664 AAMKLKMTDT SENRLWRMVV NINGIILLAV AVFCHAYFA ENSTTRP00000000237/1-664 AAMKLKMTDT SEKPLWRTIV NINGIILLTV AVFCHGYFA bmy_01574T0/1-595 AAMKLKMTDT SEKPLWRTIV NINGIILLTV AIFCHAYFA BACU003307/1-662 AAMKLKMTDT SEKPLWRTIV NINGIILLTV AIFCHAYFA