KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 17:00:30 2014 Check: 00 .. Name: BACU012354/1-532 Len: 876 Check: 7245 Weight: 1.00 Name: bmy_15436T0/1-556 Len: 876 Check: 4919 Weight: 1.00 Name: ENSTTRP00000011979/1-876 Len: 876 Check: 4084 Weight: 1.00 Name: ENSP00000358894/1-875 Len: 876 Check: 8558 Weight: 1.00 Name: ENSBTAP00000017085/1-853 Len: 876 Check: 924 Weight: 1.00 // 1 50 BACU012354/1-532 ---------- ---------- ------MAAR RSLSARGRGV LQAAAGRLLP bmy_15436T0/1-556 ---------- ---------- ------MAAR RSLSARGRGV LQAAAGRLLP ENSTTRP00000011979/1-876 MIGWGTCEPE VKMAGGQAAA ALPTWKMAAR RSLSSRGRGV LQAAAGRLLP ENSP00000358894/1-875 MIGCGACEPK VKMAGGQAAA ALPTWKMAAR RSLSARGRGI LQAAAGRLLP ENSBTAP00000017085/1-853 MIGCGACEPE VKMAGGQAAA ALPSWKMAAR RSLSARGRGV LQAAAGRLLP 51 100 BACU012354/1-532 LLLLSCCCGA GGCAAAGENE ETVIIGLRLE DTNDVSFMEG GALRPG---- bmy_15436T0/1-556 LLLLSCCCGA GGCAAAGENE ETVIIGLRLE DTNDVSFMEG GALRVSERTR ENSTTRP00000011979/1-876 LLLLSCCCGA GGCAAAGENE ETVIIGLRLE DTNDVSFMEG GALRVSERTR ENSP00000358894/1-875 LLLLSCCCGA GGCAAVGENE ETVIIGLRLE DTNDVSFMEG GALRVSERTR ENSBTAP00000017085/1-853 LLLLSCCCGA GGCTAVGENE ETVIIGLRLE DTNDVSFMEG GALRVSERTR 101 150 BACU012354/1-532 -RARAGGP-- --------CA AGGGQRPPAP GERGLGGPAP PEPDSGPQRC bmy_15436T0/1-556 VKLRVYGQNI NNETWSRIAF TEHERRRHSP GERGLGGPAP PEPDSGPQRC ENSTTRP00000011979/1-876 VKLRVYGQNI NNETWSRIAF TEHERRRHSP GERGLGGPAP PEPDSGPQRC ENSP00000358894/1-875 VKLRVYGQNI NNETWSRIAF TEHERRRHSP GERGLGGPAP PEPDSGPQRC ENSBTAP00000017085/1-853 VKLRVYGQNI NNETWSRIAF TEHERQRHSP GERGLGGPAP PEPDSGPQRC 151 200 BACU012354/1-532 GIRTSDIIIL PHIILNRRTS GIIEIEIKPL RKMEKSKSYY LCTSLSTPAL bmy_15436T0/1-556 GIRTSDIIIL PHIILNRRTS GIIEIEIKPL RKMEKSKSYY LCTSLSTPAL ENSTTRP00000011979/1-876 GIRTSDIIIL PHIILNRRTS GIIEIEIKPL RKMEKSKSYY LCTSLSTPAL ENSP00000358894/1-875 GIRTSDIIIL PHIILNRRTS GIIEIEIKPL RKMEKSKSYY LCTSLSTPAL ENSBTAP00000017085/1-853 GIRTSDIIIL PHIILNRRTS GIIEIEIKPL RKMEKSKSYY LCTSLSTPAL 201 250 BACU012354/1-532 GAGGPGSAGG AVGGKGGSGG AGPPPPPWAE TTWIYHDGED TKMIVGEEKK bmy_15436T0/1-556 GAGGPGSAGG AVGGKGGSAV AGLPPPPWAE TTWIYHDGED TKMIVGEEKK ENSTTRP00000011979/1-876 GAGGPGSAGG AVGGKGGSGV AGLPPPPWAE TTWIYHDGED TKMIVGEEKK ENSP00000358894/1-875 GAGGSGSTGG AVGGKGGSGV AGLPPPPWAE TTWIYHDGED TKMIVGEEKK ENSBTAP00000017085/1-853 GAGGSGSAGS AVGGKGGSGV AGLPPPPWAE TTWIYHDGED TKMIVGEEKK 251 300 BACU012354/1-532 FLLPFWLQVI FISLLLCLSG MFSGLNLGLM ALDPMELRIV QNCGTEKEKN bmy_15436T0/1-556 FLLPFWLQVI FISLLLCLSG MFSGLNLGLM ALDPMELRIV QNCGTEKEKN ENSTTRP00000011979/1-876 FLLPFWLQVI FISLLLCLSG MFSGLNLGLM ALDPMELRIV QNCGTEKEKN ENSP00000358894/1-875 FLLPFWLQVI FISLLLCLSG MFSGLNLGLM ALDPMELRIV QNCGTEKEKN ENSBTAP00000017085/1-853 FLLPFWLQVI FISLLLCLSG MFSGLNLGLM ALDPMELRIV QNCGTEKEKN 301 350 BACU012354/1-532 YAKRIEPVRR QGNYLLCSLL LGNVLVNTTL TILLDDIAGS GLVAVVVSTI bmy_15436T0/1-556 YAKRIEPVRR QGNYLLCSLL LGNVLVNTTL TILLDDIAGS GLVAVVVSTI ENSTTRP00000011979/1-876 YAKRIEPVRR QGNYLLCSLL LGNVLVNTTL TILLDDIAGS GLVAVVVSTI ENSP00000358894/1-875 YAKRIEPVRR QGNYLLCSLL LGNVLVNTTL TILLDDIAGS GLVAVVVSTI ENSBTAP00000017085/1-853 YAKRIEPVRR QGNYLLCSLL LGNVLVNTTL TILLDDIAGS GLVAVVVSTI 351 400 BACU012354/1-532 GIVIFGEIVP QAICSRHGLA VGANTIFLTK FFMMMTFPAS YPVSKLLDCV bmy_15436T0/1-556 GIVIFGEIVP QAICSRHGLA VGANTIFLTK FFMMMTFPAS YPVSKLLDCV ENSTTRP00000011979/1-876 GIVIFGEIVP QAICSRHGLA VGANTIFLTK FFMMMTFPAS YPVSKLLDCV ENSP00000358894/1-875 GIVIFGEIVP QAICSRHGLA VGANTIFLTK FFMMMTFPAS YPVSKLLDCV ENSBTAP00000017085/1-853 GIVIFGEIVP QAICSRHGLA VGANTIFLTK FFMMMTFPAS YPVSKLLDCV 401 450 BACU012354/1-532 LGQEIGTVYN REKLLEMLRV TDPYNDLVKE ELNIIQGALE LRTKTVEDVM bmy_15436T0/1-556 LGQEIGTVYN REKLLEMLRV TDPYNDLVKE ELNIIQGALE LRTKTVEDVM ENSTTRP00000011979/1-876 LGQEIGTVYN REKLLEMLRV TDPYNDLVKE ELNIIQGALE LRTKTVEDVM ENSP00000358894/1-875 LGQEIGTVYN REKLLEMLRV TDPYNDLVKE ELNIIQGALE LRTKTVEDVM ENSBTAP00000017085/1-853 LGQEIGTVYN REKLLEMLRV TDPYNDLVKE ELNIIQGALE LRTKTVEDVM 451 500 BACU012354/1-532 TPLRDCFMIT GEAILDFNTM SEIMESGYTR IPVFEGERSN IVDLLFVKDL bmy_15436T0/1-556 TPLRDCFMIT GEAILDFNTM SEIMESGYTR IPVFEGERSN IVDLLFVKDL ENSTTRP00000011979/1-876 TPLRDCFMIT GEAILDFNTM SEIMESGYTR IPVFEGERSN IVDLLFVKDL ENSP00000358894/1-875 TPLRDCFMIT GEAILDFNTM SEIMESGYTR IPVFEGERSN IVDLLFVKDL ENSBTAP00000017085/1-853 TPLRDCFMIT GEAILDFNTM SEIMESGYTR IPVFEGERSN IVDLLFVKDL 501 550 BACU012354/1-532 AFVDPDDCTP LKTITKFYNH PLHFVFNDTK LDAMLEEFKK GGK------- bmy_15436T0/1-556 AFVDPDDCTP LKTITKFYNH PLHFVFNDTK LDAMLEEFKK DEC------- ENSTTRP00000011979/1-876 AFVDPDDCTP LKTITKFYNH PLHFVFNDTK LDAMLEEFKK GKSHLAIVQR ENSP00000358894/1-875 AFVDPDDCTP LKTITKFYNH PLHFVFNDTK LDAMLEEFKK GKSHLAIVQR ENSBTAP00000017085/1-853 AFVDPDDCTP LKTITKFYNH PLHFVFNDTK LDAMLEEFKK GKSHLAIVQR 551 600 BACU012354/1-532 ---------- ---------- ---------- ---------- ---------- bmy_15436T0/1-556 ---------- --------LK SVSDKCLK-- ---------- ---------- ENSTTRP00000011979/1-876 VNNEGEGDPF YEVLGIVTLE DVIEEIIKSE ILDETDLYTD NRTKKKVAHR ENSP00000358894/1-875 VNNEGEGDPF YEVLGIVTLE DVIEEIIKSE ILDETDLYTD NRTKKKVAHR ENSBTAP00000017085/1-853 VNNEGEGDPF YEVLGIVTLE DVIEEIIKSE ILDETDLYTD NRTKKKVAHR 601 650 BACU012354/1-532 ---------- ---------- ---------- -FC------- ---------- bmy_15436T0/1-556 ---------- ---------- ---------- -FL------- ---------- ENSTTRP00000011979/1-876 ERKQDFSAFK QTDSEMKVKI SPQLLLAMHL VFISIEVEAF SPSQMSEKIL ENSP00000358894/1-875 ERKQDFSAFK QTDSEMKVKI SPQLLLAMHR -FLATEVEAF SPSQMSEKIL ENSBTAP00000017085/1-853 ERKQDFSAFK QTDSEMKVKI SPQLLLAMHR -FLATEVEAF SPSQMSEKIL 651 700 BACU012354/1-532 ---------- ---------- ---------- -----YLSL- ---------- bmy_15436T0/1-556 -------NLV TELQYS---- ---------- ------FVI- ---------- ENSTTRP00000011979/1-876 LRLLKHPNVI QELKYDEKNK KAPEYYLYQR NKPVDYFVLI LQGKVEVEAG ENSP00000358894/1-875 LRLLKHPNVI QELKYDEKNK KAPEYYLYQR NKPVDYFVLI LQGKVEVEAG ENSBTAP00000017085/1-853 LRLLKHPNVI QELKYDEKNK KAPEYYLYQR NKPVDYFVLI LQGKVEVEAG 701 750 BACU012354/1-532 --ACSFSLHP PPYL------ ---------- ---------- ---SPLPSEQ bmy_15436T0/1-556 --GIVF---- ---------- ---------- ---------- ---------- ENSTTRP00000011979/1-876 KEGMKFEASA FSYYGVMALT ASPVPLSLSR TFVVSRTELX XXXXXXENKS ENSP00000358894/1-875 KEGMKFEASA FSYYGVMALT ASPVPLSLSR TFVVSRTELL AAGSPGENKS ENSBTAP00000017085/1-853 KEGMKFEASA FSYYGVMALT A--------- ---------- ---SPGENKS 751 800 BACU012354/1-532 PPKAN----- ---------- ---------- ---------- ---------- bmy_15436T0/1-556 ---------- ---------- ---------- ----SKLLQ- ---------- ENSTTRP00000011979/1-876 PPRPCGLNHS DSLSRSDRID AITPTLGSSN NQLSSSFLQV YIPDYSVRAL ENSP00000358894/1-875 PPRPCGLNHS DSLSRSDRID AVTPTLGSSN NQLNSSLLQV YIPDYSVRAL ENSBTAP00000017085/1-853 PPRPCGLNHS DSLSRSDRID AVTPTLGNSN NQLNSAFLQV YIPDYSVRAL 801 850 BACU012354/1-532 ---------- ---------- ---------- ---------- ---------- bmy_15436T0/1-556 ---------- ---------- ---------- ---------- ---HEVLKE- ENSTTRP00000011979/1-876 SDLQFVKISR QQYQNALMAS RMDKTPQSSD SENTKIELTL TELHDGLPDE ENSP00000358894/1-875 SDLQFVKISR QQYQNALMAS RMDKTPQSSD SENTKIELTL TELHDGLPDE ENSBTAP00000017085/1-853 SDLQFVKISR QQYQNALMAS RMDKTPQSSD SENTKIELTL TELHDGLPDE 851 900 BACU012354/1-532 ---------- ---------- ------ bmy_15436T0/1-556 ---------- ---------- ------ ENSTTRP00000011979/1-876 TANLLNEQNC VTHSKANHSL HSEGAI ENSP00000358894/1-875 TANLLNEQNC VTHSKANHSL HNEGAI ENSBTAP00000017085/1-853 TANLLNEQNC VTHTKANHSL HSEGAI