KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 17:00:32 2014 Check: 00 .. Name: BACU012353/1-337 Len: 611 Check: 8890 Weight: 1.00 Name: bmy_19109T0/1-427 Len: 611 Check: 7154 Weight: 1.00 Name: ENSTTRP00000011980/1-562 Len: 611 Check: 4612 Weight: 1.00 Name: ENSP00000339479/1-561 Len: 611 Check: 6469 Weight: 1.00 Name: ENSBTAP00000017090/1-560 Len: 611 Check: 3809 Weight: 1.00 // 1 50 BACU012353/1-337 ---------- ---------- ---------M SYKKLV---- -------CDL bmy_19109T0/1-427 ---------- ---------- ---------- --MRVFVNRS LAMEKIKCFG ENSTTRP00000011980/1-562 MTTSWSDRLQ NAADMPANMD KHFLKKYRRE AYHRVFVNRS LAMEKIKCFG ENSP00000339479/1-561 MSTSWSDRLQ NAADMPANMD KHALKKYRRE AYHRVFVNRS LAMEKIKCFG ENSBTAP00000017090/1-560 MTTSWSDRLQ NAADMPANMD KHALKKYRRE AYHRVFVNRS LAMEKIKCFG 51 100 BACU012353/1-337 FRCHISLA-- ---------- ---------- ---------- ---------- bmy_19109T0/1-427 FDMDYTLAGK MTPYKVKHNS YLKSINILKG FMYLQECQCN SFKTGVTHSA ENSTTRP00000011980/1-562 FDMDYTLA-- ---------- ---------- ---------- ---------- ENSP00000339479/1-561 FDMDYTLA-- ---------- ---------- ---------- ---------- ENSBTAP00000017090/1-560 FDMDYTLA-- ---------- ---------- ---------- ---------- 101 150 BACU012353/1-337 ---------- ---------- ---------- ---------- ---------- bmy_19109T0/1-427 SASASASLYK SPEYESLGFE LTVERLVSIG YPQELLSFAY DSTFPTRGLV ENSTTRP00000011980/1-562 -------VYK SPEYESLGFE LTVERLVSIG YPQELLSFAY DSTFPTRGLV ENSP00000339479/1-561 -------VYK SPEYESLGFE LTVERLVSIG YPQELLSFAY DSTFPTRGLV ENSBTAP00000017090/1-560 -------VYK SPEYESLGFE LTVERLVSIG YPQELLSFAY DSTFPTRGLV 151 200 BACU012353/1-337 -EVVYGPYV- ---------- --GFFFF--- ---------- ---------- bmy_19109T0/1-427 FDTLYGNLLK VDAYGNLLVC AHGFNFIRGP ETREQYPNKF IQRDDTERFY ENSTTRP00000011980/1-562 FDTLYGNLLK VDAYGNLLVC AHGFNFIRGP ETREQYPNKF IQRDDTERFY ENSP00000339479/1-561 FDTLYGNLLK VDAYGNLLVC AHGFNFIRGP ETREQYPNKF IQRDDTERFY ENSBTAP00000017090/1-560 FDTLYGNLLK VDAYGNLLVC AHGFNFIRGP ETREQYPNKF IQRDDTERFY 201 250 BACU012353/1-337 ---------- ---------- ---------- ---------- ---------- bmy_19109T0/1-427 ILNTLFNLPE TYLLACLVDF FTNCPRYTSC ETGFKDGDLF MSYRSMFQDV ENSTTRP00000011980/1-562 ILNTLFNLPE TYLLACLVDF FTNCSRYTSC ETGFKDGDLF MSYRSMFQDV ENSP00000339479/1-561 ILNTLFNLPE TYLLACLVDF FTNCPRYTSC ETGFKDGDLF MSYRSMFQDV ENSBTAP00000017090/1-560 ILNTLFNLPE TYLLACLVDF FTNCPRYTSC ETGFKDGDLF MSYRSMFQDV 251 300 BACU012353/1-337 ---------- ---------- ---------- ---------- ---------- bmy_19109T0/1-427 RDAVDWVHYK GSLKEKTVEN LEKYVVK--- ---------- ---------- ENSTTRP00000011980/1-562 RDAVDWDPYK GSLKEKTVEN LEKYVVKDGK LPLLLSRMKE VGKVFLATNS ENSP00000339479/1-561 RDAVDWVHYK GSLKEKTVEN LEKYVVKDGK LPLLLSRMKE VGKVFLATNS ENSBTAP00000017090/1-560 RDAVDWVHYK GSLKEKTVEN LEKYVVKDGK LPLLLSRMKE VGKVFLATNS 301 350 BACU012353/1-337 -----QKIMT YLFDFPHGPK PGSSHRPWQS YFDLILVDAR KPLFFGEGTV bmy_19109T0/1-427 -----DKIMT YLFDFPHGPK PGSSHRPWQS YFDLILVDAR KPLFFGEGTV ENSTTRP00000011980/1-562 DYKYTDKIMT YLFDFPHGPK PGSSHRPWQS YFDLILVDAR KPLFFGEGTV ENSP00000339479/1-561 DYKYTDKIMT YLFDFPHGPK PGSSHRPWQS YFDLILVDAR KPLFFGEGTV ENSBTAP00000017090/1-560 DYKYTDKIMT YLFDFPHGPK PGSSHRPWQS YFDLILVDAR KPLFFGEGTV 351 400 BACU012353/1-337 LRQVDTKTGK LKIGTYTGPL QHGIVYSGGS SDTICDLLGA KGKDILYIGD bmy_19109T0/1-427 LRQVDTKTGK LKIGTYTGPL QHGIVYSGGS SDTICDLLGA KGKDILYIGD ENSTTRP00000011980/1-562 LRQVDTKTGK LKIGTYTGPL QHGIVYSGGS SDTICDLLGA KGKDILYIGD ENSP00000339479/1-561 LRQVDTKTGK LKIGTYTGPL QHGIVYSGGS SDTICDLLGA KGKDILYIGD ENSBTAP00000017090/1-560 LRQVDTKTGK LKIGTYTGPL QHGIVYSGGS SDTVCDLLGA KGKDILYIGD 401 450 BACU012353/1-337 HIFGDILKSK KRQGWRTFLV IPELAQELHV WTDKSSLFEE LQSLDIFLAE bmy_19109T0/1-427 HIFGDILKSK KRQGWRTFLV IPELAQELHV WTDKSSLFEE LQSLDIFLAE ENSTTRP00000011980/1-562 HIFGDILKSK KRQGWRTFLV IPELAQELHV WTDKSSLFEE LQSLDIFLAE ENSP00000339479/1-561 HIFGDILKSK KRQGWRTFLV IPELAQELHV WTDKSSLFEE LQSLDIFLAE ENSBTAP00000017090/1-560 HIFGDILKSK KRQGWRTFLV IPELAQELHV WTDKSSLFEE LQSLDIFLAE 451 500 BACU012353/1-337 LYKHLDSSSN ERPDISSIQR RIKKVTHDMD MCYGMMGSLF RSGSRQTLFA bmy_19109T0/1-427 LYKHLDSSSN ERPDISSIQR RIKVSKWDLG EN-------- ---------- ENSTTRP00000011980/1-562 LYKHLDSSSN ERPDISSIQR RIKKVTHDMD MCYGMMGSLF RSGSRQTLFA ENSP00000339479/1-561 LYKHLDSSSN ERPDISSIQR RIKKVTHDMD MCYGMMGSLF RSGSRQTLFA ENSBTAP00000017090/1-560 LYKHLDSSSN ERPDISSIQR RIKKVTHDMD MCYGMMGSLF RSGSRQTLFA 501 550 BACU012353/1-337 SQVMRYADLY AASFINLLYY PFSYLFRAAH VLMPHESTVE HTHVDINEME bmy_19109T0/1-427 ---------- ---FENKL-- ---------- ---------- ---------- ENSTTRP00000011980/1-562 SQVMRYADLY AASFINLLYY PFSYLFRAAH VLMPHESTVE HTHVDINEXX ENSP00000339479/1-561 SQVMRYADLY AASFINLLYY PFSYLFRAAH VLMPHESTVE HTHVDINEME ENSBTAP00000017090/1-560 SQVMRYADLY AASFINLLYY PFSYLFRAAH VLMPHESTVE HTHVDINEME 551 600 BACU012353/1-337 SPLATRNRTS VDFKDTDYKR HQLTRSISEI KPPNLFPLAP QEITHCHDED bmy_19109T0/1-427 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000011980/1-562 XXXXXXXXTS VDFKDTDYKR HQLTRSISEI KPPNLFPLAP QEITHCHDED ENSP00000339479/1-561 SPLATRNRTS VDFKDTDYKR HQLTRSISEI KPPNLFPLAP QEITHCHDED ENSBTAP00000017090/1-560 SPLATRNRTS VDFKDTDYKR HQLTRSISEI KPPNLFPLAP QEITHCHDED 601 650 BACU012353/1-337 DDEEEEEEEE E bmy_19109T0/1-427 ---------- - ENSTTRP00000011980/1-562 DDEEEEEEEE E ENSP00000339479/1-561 DDEEEEEEEE - ENSBTAP00000017090/1-560 DDEEEEEEE- -